mRNA_H-elongata_contig7648.15321.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7648.15321.1
Unique NamemRNA_H-elongata_contig7648.15321.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: A0A813BMH3_9DINO (RVE8 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BMH3_9DINO)

HSP 1 Score: 68.9 bits (167), Expect = 2.090e-12
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1
Query:   37 GRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
            GRW+KEEH+AFL GLR  G  W+ I + FV TRSV QIRTHAQK+F
Sbjct:   13 GRWSKEEHDAFLQGLRTVGNKWKEIHDHFVPTRSVVQIRTHAQKYF 58          
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: W7TGG4_9STRA (Myb-like dna-binding shaqkyf class family protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGG4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.010e-12
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   28 KCKGRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
            +C+GRWTK+EH AFL GLR  G+DW  I +  V TRS  Q+R+HAQK+F
Sbjct:    4 RCQGRWTKQEHLAFLRGLRVYGRDWNKI-QRLVGTRSQPQVRSHAQKYF 51          
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: A0A3Q7GG85_SOLLC (Uncharacterized protein n=3 Tax=Solanum subgen. Lycopersicon TaxID=49274 RepID=A0A3Q7GG85_SOLLC)

HSP 1 Score: 66.2 bits (160), Expect = 8.100e-12
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   22 SRKCKGRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
            SRK +G+WT+EEHEAFL+G+   G++W  + + FV +R+ TQI +HAQK+F
Sbjct:  122 SRKQEGKWTEEEHEAFLIGMEKVGRNWTRVSKEFVLSRTPTQITSHAQKYF 172          
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: D7G4K1_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K1_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.430e-11
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   37 GRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
            GRWTK+EH  FL+GL   GKDW  I   FVF+R+ TQIRTHAQK+F
Sbjct:   57 GRWTKKEHADFLVGLEACGKDWMEISCHFVFSRTATQIRTHAQKYF 102          
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: A0A835ZEA3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.620e-11
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   37 GRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
            GRWT EEHE FL GLR+  K W+ I +  + TR+V Q+RTHAQK F
Sbjct:    2 GRWTAEEHERFLQGLREHNKQWKLIAD-LIRTRTVVQVRTHAQKHF 46          
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: M1DMJ7_SOLTU (Myb family transcription factor n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1DMJ7_SOLTU)

HSP 1 Score: 63.5 bits (153), Expect = 1.110e-10
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   22 SRKCKGRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
            SRK +G+WT++EHEAFL+GL   G++W  + + FV +R+ TQI +HAQK+F
Sbjct:  143 SRKQEGKWTEDEHEAFLIGLDKVGRNWTRVSKEFVPSRTPTQITSHAQKYF 193          
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: A0A1E7FKC4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKC4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.510e-10
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   40 RWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
            RWTKEEH+AFL GL+  GK+W+ +    V TR+V Q RTHAQK+F
Sbjct:    1 RWTKEEHDAFLSGLKMYGKEWKKVAAK-VKTRTVVQTRTHAQKYF 44          
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: A0A7S3P0S3_EUPCR (Hypothetical protein n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3P0S3_EUPCR)

HSP 1 Score: 60.5 bits (145), Expect = 2.320e-10
Identity = 26/49 (53.06%), Postives = 39/49 (79.59%), Query Frame = 1
Query:   28 KCKGRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKFF 174
            K +GRWT EEH+ F++GL   GK+W+ + E+F+ TR+ +QIR+HAQK+F
Sbjct:   21 KAEGRWTNEEHKLFIVGLGKFGKNWKRL-EAFIETRTSSQIRSHAQKYF 68          
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: G4ZZP8_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZZP8_PHYSP)

HSP 1 Score: 58.9 bits (141), Expect = 3.130e-10
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   37 GRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQIRTHAQKF 171
            GRWTK EHE FL GL+  GK W+ I  S V TR++ QIRTHAQK+
Sbjct:   19 GRWTKREHELFLEGLQRFGKSWKKIS-SLVHTRTLVQIRTHAQKY 62          
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Match: A0A6P6TL54_COFAR (transcription factor SRM1-like n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6TL54_COFAR)

HSP 1 Score: 62.0 bits (149), Expect = 3.850e-10
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   13 ERRSRKCKGRWTKEEHEAFLMGLRDRGK-DWEAIGESFVFTRSVTQIRTHAQKFF 174
            E R +K   RWTKEEHE FL+GL+  GK DW +I  + V T++ TQ+ +HAQK+F
Sbjct:  113 ENRQKKKGTRWTKEEHENFLLGLKKYGKGDWRSISRNSVLTKTPTQVASHAQKYF 167          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7648.15321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813BMH3_9DINO2.090e-1267.39RVE8 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
W7TGG4_9STRA5.010e-1259.18Myb-like dna-binding shaqkyf class family protein ... [more]
A0A3Q7GG85_SOLLC8.100e-1252.94Uncharacterized protein n=3 Tax=Solanum subgen. Ly... [more]
D7G4K1_ECTSI1.430e-1165.22Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A835ZEA3_9STRA3.620e-1158.70Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
M1DMJ7_SOLTU1.110e-1052.94Myb family transcription factor n=1 Tax=Solanum tu... [more]
A0A1E7FKC4_9STRA1.510e-1060.00Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A7S3P0S3_EUPCR2.320e-1053.06Hypothetical protein n=1 Tax=Euplotes crassus TaxI... [more]
G4ZZP8_PHYSP3.130e-1062.22Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6P6TL54_COFAR3.850e-1052.73transcription factor SRM1-like n=3 Tax=Coffea TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7648contigH-elongata_contig7648:2038..2211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue5.6e-09
Seed eggNOG ortholog2880.D7G4K1
EggNOG free text desc.ubiquitin modification-dependent histone binding
EggNOG OGsKOG0724@1,KOG0724@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.0967762-CDS-H-elongata_contig7648:2037..22111622931169.0967762-CDS-H-elongata_contig7648:2037..2211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7648 2038..2211 +
1691679726.6165059-CDS-H-elongata_contig7648:2037..22111691679726.6165059-CDS-H-elongata_contig7648:2037..2211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7648 2038..2211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7648.15321.1prot_H-elongata_contig7648.15321.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7648 2038..2211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7648.15321.1

>prot_H-elongata_contig7648.15321.1 ID=prot_H-elongata_contig7648.15321.1|Name=mRNA_H-elongata_contig7648.15321.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
GGCWERRSRKCKGRWTKEEHEAFLMGLRDRGKDWEAIGESFVFTRSVTQI
RTHAQKFF
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mRNA from alignment at H-elongata_contig7648:2038..2211+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7648.15321.1 ID=mRNA_H-elongata_contig7648.15321.1|Name=mRNA_H-elongata_contig7648.15321.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig7648:2038..2211+ (Himanthalia elongata Himel1 dioecious)
GGGGGCTGTTGGGAACGACGCAGCAGAAAGTGCAAGGGAAGGTGGACCAA AGAAGAACATGAGGCCTTTCTGATGGGCCTCCGTGACCGTGGCAAAGACT GGGAGGCCATCGGGGAAAGCTTCGTTTTCACCCGCTCGGTTACTCAGATC CGAACGCATGCTCAAAAGTTTTTT
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Coding sequence (CDS) from alignment at H-elongata_contig7648:2038..2211+

>mRNA_H-elongata_contig7648.15321.1 ID=mRNA_H-elongata_contig7648.15321.1|Name=mRNA_H-elongata_contig7648.15321.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig7648:2038..2211+ (Himanthalia elongata Himel1 dioecious)
GGGGGCTGTTGGGAACGACGCAGCAGAAAGTGCAAGGGAAGGTGGACCAA
AGAAGAACATGAGGCCTTTCTGATGGGCCTCCGTGACCGTGGCAAAGACT
GGGAGGCCATCGGGGAAAGCTTCGTTTTCACCCGCTCGGTTACTCAGATC
CGAACGCATGCTCAAAAGTTTTTTGGGGGCTGTTGGGAACGACGCAGCAG
AAAGTGCAAGGGAAGGTGGACCAAAGAAGAACATGAGGCCTTTCTGATGG
GCCTCCGTGACCGTGGCAAAGACTGGGAGGCCATCGGGGAAAGCTTCGTT
TTCACCCGCTCGGTTACTCAGATCCGAACGCATGCTCAAAAGTTTTTT
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