mRNA_H-elongata_contig76023.15285.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76023.15285.1
Unique NamemRNA_H-elongata_contig76023.15285.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A5N6LHI8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LHI8_9ASTR)

HSP 1 Score: 199 bits (507), Expect = 1.750e-53
Identity = 141/432 (32.64%), Postives = 207/432 (47.92%), Query Frame = 1
Query:    1 EPRNRRQAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEE--NQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESM-------------------------------VEVRRQEGKQGTGYVG----------------VRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQ 1149
            EP N + A+  PE   W  A  +EM+ M +N V+  V  P     VG+K ++KRK      V  YK RLVA+GF Q + V Y E +S      SIR+LLA  A  D E+   D + AFL   + E++Y+  PE   + K+      LNK ++GL Q  RC N +F   +   GF   + + C++RK        LV+ +VDDIL    + + ++     LG  F  KD+G+A Y +G  I R+  +R L + Q  Y++ M                               +E+RR +       +G                +    RF ++PG AH  AV  I++YL  TK+  + +GG   EL  + YTD+ F    D  RS S  V  L  GA+SW SS Q V A  T+++EY+A SDA KEV ++++
Sbjct:  205 EPTNYKSAISDPESVKWLDAMNSEMKSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDENFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPSKACKLNKSIHGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKASGRTISFLVL-YVDDILIIGNNILMLNEVKHWLGNCFAMKDLGEAAYILGIKIHRDRSKRLLGMSQSAYIDKMMTRFNMENSKKGTIPMTKGTVLNKSQSPSTDIEIRRMQAIPYASAIGSIMYAMLCTRPDVSYALSMTSRFQQSPGIAHWTAVKNILKYLRRTKEMFLIFGGVEEELTVRCYTDASFQTDRDDSRSQSGFVFTLNGGAVSWKSSKQSVVADSTTESEYIAASDAAKEVAWIKK 635          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A438DYU4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DYU4_VITVI)

HSP 1 Score: 201 bits (510), Expect = 7.600e-53
Identity = 148/451 (32.82%), Postives = 233/451 (51.66%), Query Frame = 1
Query:    1 EPRNRRQAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQ-DSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPE---ENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMV-------------------------------EVRRQEGKQGTGYVG----------------VRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQG-CELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQFMELSLRIGAVNV 1197
            EP+  ++A+ S E D W KA + EM  + +N  ++ V +PKD+ VVG+K ++KRK G   ++  +YK RLVA+GF Q E V Y E +S     +SIR+LLA  A +D EL   D + AFL  ++DE +Y++ PE   E  K  G V  L K +YGL Q  R    +F   M  IGF     D C++ K+ DD   V ++++VDD+L   K+K  +++    L  +F+ KD+G A+  +G  I R+  +R L++ Q+ Y+  ++                               E R  E       VG                V  + R+   PG  H +AV  + QYL  T+   + YGG    E   + + D+D+   +DTR+S++  V  L  GA+SW +++Q V A  T++AEY+A+++AVKE ++L+   +  EL++  G V V
Sbjct:  548 EPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIRLLLAFVAHEDLELDQLDVKTAFLHGELDELIYMQPPEGFGEGIK-DGQVCLLKKSLYGLKQSPRQWYKRFDKYMLDIGFNRSSHDGCVYFKLTDDSM-VYLLLYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTLFGGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITE--ELAMYRGKVVV 994          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A438IQ82_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IQ82_VITVI)

HSP 1 Score: 198 bits (504), Expect = 4.390e-52
Identity = 137/399 (34.34%), Postives = 204/399 (51.13%), Query Frame = 1
Query:   19 QAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEENQKFSGA--VGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVE-VRRQEGKQGTGYV--------------------GVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLR 1146
            QAMES +   W +A   E++ M  N V+  +  P +   VG K ++K K      +E++K RLVA+GF Q E + Y + +S      S+R+++A  A  D EL   D + AFL  ++DE++Y+E PE   K      V  L K +YGL Q  R    KF   + + GF+   VD C++ KV   K  + ++++VDDIL  + D   +      L + F   DMG+A Y +G  I R+     L + Q  Y++ ++E    Q    G   +                     V  + R+  +PG  H KA  K+M+YL  TKD+ +TY  +  +L    Y+DSD+G CLD+ +S S  V MLA GAISW S  Q +TAS T +AE+VA  +A    L+LR
Sbjct:  693 QAMESDDSSKWMEAMNEELKSMAHNGVWDLIELPNNCKPVGCKWVFKTKRDAKGNIERFKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENIVDQCIYLKVSGSKF-IFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 1089          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A438FEW0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FEW0_VITVI)

HSP 1 Score: 198 bits (503), Expect = 6.210e-52
Identity = 146/451 (32.37%), Postives = 233/451 (51.66%), Query Frame = 1
Query:    1 EPRNRRQAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQ-DSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPE---ENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMV-------------------------------EVRRQEGKQGTGYVG----------------VRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQG-CELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQFMELSLRIGAVNV 1197
            EP+  ++A+ S E D W KA + EM  + +N  ++ V +PKD+ VVG+K ++KRK G   ++  +YK RLVA+GF Q E V Y E +S     +SIR+LLA  A +D EL   D + AFL  ++DE +Y++ PE   E  K  G V  L K +YGL Q  R    +F   M  IGF     D C++ K+ +D   V ++++VDD+L   K+K  +++    L  +F+ KD+G A+  +G  I R+  +R L++ Q+ Y+  ++                               E R  E       VG                V  + R+   PG  H +AV  + QYL  T+   + YGG    E   + + D+D+   +DTR+S++  V  +  GA+SW +++Q V A  T++AEY+A+++AVKE ++L+   +  EL++  G V V
Sbjct:  734 EPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIRLLLAFVAHEDLELDQLDVKTAFLHGELDELIYMQPPEGFGEGIK-DGQVCLLKKSLYGLKQSPRQWYKRFDKYMLDIGFNPSSHDGCVYFKLTEDSM-VYLLLYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTVFGGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITE--ELAMYRGKVVV 1180          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 196 bits (497), Expect = 4.100e-51
Identity = 126/445 (28.31%), Postives = 224/445 (50.34%), Query Frame = 1
Query:   22 AMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVE---------------------------VRRQEGKQGTGYVGVRAVV-------------RFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQFMELSLR------IGAVNVLRIIRGP 1218
            AM   +  +WRKA E E+    +  V+++V RP+D+ ++G+K ++K K G D +VEKYK RLVAQGF QVE + Y E ++    + SIR+LLA  A  D E+   D + AFL  +++EE+Y+++P  ++  + AV  L K +YGL Q  R    K   ++ T+GF   + D C+F K +D +   ++ V+VDD +  +     + +  ++LG +F   D+G+  + +   +TRN +ER +++ Q  Y+E ++E                           V  +E ++  G +   A+              R  + PG  H  AV ++ +YL    +  + Y G+        YTD+D+      R+S+S    +L+  AISW S  Q   +  +++AEY+A +   +E  +++     + L L+      +   + +++I+ P
Sbjct: 1001 AMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMD-RHPPIIAVYVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILERHGMAECKPVHTPMDSKLKLEKLHAPEVNVKEYQRLIGSLMYAAIATRFDIATAVGMLSRHSQAPGKEHHIAVKRVFRYLRGASESDVLYDGKSPTTDPVIYTDADWAGDSSDRKSISGYTAILSGAAISWSSKKQSTVSLSSTEAEYIAAARGTQEATWIQTFLSEIGLPLKKPITLYVDNQSAIKLIQNP 1444          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 193 bits (491), Expect = 5.520e-51
Identity = 134/448 (29.91%), Postives = 223/448 (49.78%), Query Frame = 1
Query:    1 EPRNRRQAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMV---------------------------EVRRQEGKQGTGYV-------------GVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQFMELSLRIGAVNVLRIIRGPSS 1224
            +P++  +AM  P+ + W+ A   E+   V+  +Y +V RP+D+ VVG K +++ K G D ++EKYK R+VA+GF QVE V YT+ ++     ASIR LLA  A  D E+   D + AFL  ++DEE+++  P   Q     V  L K +YGL Q  R    K   +  ++GF     D  +F K  +D   ++V V++DD+L       A++   A+LG  +   D+G+AR  +   I R+   R +++ Q  YVES++                           E+     +   G +              V A+ +   +PG  H  A+M + +YL  T D R+ Y G         Y D+++ + ++ RRS++  V +++  AISW S  Q  TA  +++AEY+A++ A KE L+LR    F++   ++ A   L ++   S+
Sbjct:  281 DPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKIRAEFESLGFTRSNADHSVFYKN-EDGVLLIVAVYIDDMLIFCNSLPAVEALKADLGSHYDMTDLGEARRILNIKIIRDRARRTIELTQRQYVESILTHQGMADCRPVSTPMAQNLKLLKLSDAEIDATPYQSALGSLMYAMLGTRPDLAFAVGALSKHAAHPGEEHWTALMHVYKYLRATTDLRLVYDGNAKGEFPLCYVDANWASDVNDRRSVTGYVYIMSGAAISWSSKKQPSTALSSTEAEYMAMAGATKEALWLRT---FLDEIQQLPAAATLLLVDNQSA 724          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A2N9FS65_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FS65_FAGSY)

HSP 1 Score: 194 bits (493), Expect = 1.220e-50
Identity = 133/389 (34.19%), Postives = 210/389 (53.98%), Query Frame = 1
Query:    1 EPRNRRQAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPE--ENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVV-VHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVEVRRQEGKQGTGYVGVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQ 1158
            EP +  +A+ SP+ D+W  A + EM  M +N V++ V  P  +  +G K + K K   D  +++YK RLVA+G+ Q E + Y + +S     ASIR++L+  A +D EL   D + AFL  ++DEE+Y+  P   E +     V  L + +YGL Q  R    +F   + + GFE  + D C++ K    K  +L++ ++VDDIL    D  ++      L   F+ KDMG+A + +G  ITR+  ++ L + Q  Y++ ++E              V  V R+  NPGPAH +AV +I++YL  T D  + Y   G +L    Y+D+D+ +  D R+S S    +L  GA+SW S  Q   A  T ++EYVA S AV+E ++LR+  Q
Sbjct:  683 EPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKVCRLKRSIYGLKQSSRQWYLRFHDSITSFGFEMIEEDHCVYLK--RSKRSILILSLYVDDILLAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILEHI---------CFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCY--HGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQ 1058          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A0A9Z683_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z683_LYGHE)

HSP 1 Score: 194 bits (492), Expect = 1.820e-50
Identity = 133/416 (31.97%), Postives = 213/416 (51.20%), Query Frame = 1
Query:   43 DDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMV-------------------------------EVRRQEGKQGTGYVG----------------VRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGG-QGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLR 1146
            D W++A + E +  +EN  ++ V  P  K+ + +K +++ K     K+ K+K RLV +G  Q + + + E +S     +SIR LLA  A +D ++   DA  AFL+ D+ EE+Y+  PE  Q+ SG V  L K +YGL Q  R  N K    + TIG    K D C++ K    K  V V V VDD+L  + DK       ++L + FK  D+G+A++ +G  I+R+ + +++ +DQ  Y+++++                               E ++ E       VG                V  V RF  NPGPAH  AV +I++Y+  T DW++ Y G +  E+    Y DSDF + +D R+S++  V ++  G++SW +  Q  TA  T++AEY+ALS A +E L+LR
Sbjct:  853 DLWKQAMDVEYKSQLENGTWELVDLPPGKVPLNSKWVFRTKRDVTGKIVKHKARLVVKGCAQRKGLDFEETFSPVVRYSSIRYLLALAAKRDMDIHQMDAVSAFLQGDLTEEIYMRQPEGYQE-SGKVCRLRKSLYGLKQASRVWNIKLDRSLKTIGLRQSKFDPCIYYKS-SQKKMVFVAVWVDDLLIFSDDKKLTQEVKSQLMKCFKMTDIGEAKFVLGFQISRDRERKKIWMDQRAYIDNVLIRFGMENCNPAATPLDPNIKLSKDQQPSSPDERKKMEAIPYQEAVGSLLFASQVCRPDIAFAVSLVSRFNSNPGPAHWAAVKRILRYMKGTSDWKLEYDGTKSSEITG--YCDSDFASDVDERKSVTGYVFLMCDGSVSWGTKKQPTTALSTTEAEYMALSAATQEALWLR 1264          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: A0A0B4EZU2_METAF (Gag-Pol polyprotein (Fragment) n=2 Tax=Metarhizium TaxID=5529 RepID=A0A0B4EZU2_METAF)

HSP 1 Score: 193 bits (490), Expect = 3.310e-50
Identity = 133/429 (31.00%), Postives = 209/429 (48.72%), Query Frame = 1
Query:    1 EPRNRRQAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEENQKFSGAVGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMV------------------EVRRQEGKQGTGYV------GVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLRQAQQFMELSLRIGAVNVLRIIRG 1215
            EP + R A    +W  W +A  +E   + +N  +  VARP DK ++  K +YK K G   ++ +YK R V +GF Q E + Y E ++      S + + A  AA D EL   D + AFL  DID ++Y+E P E    +G V  LNK +YGL Q  R         +  +GF     D  +F K      +  + V+VDD+L     K  +      L  +F+  D+G   +Y+G  +TR+ K R +++ Q  Y+E ++                  +++  E  + T  +       + +++RF   P  AH++AV +IM+YL  T D  + Y G+   L    +TDSD+    +TRRS S  V  L  GAISW S  Q  TA  + +AEY+  + A KE ++LR+  + ++++   G   V  II G
Sbjct:  826 EPPSYRHAKADLDWPKWLEAMRSEHESLKDNKTWSLVARPTDKRILSGKWVYKLKRGASGEILRYKARWVVRGFEQTEGIDYDETFASVVKPMSYKAIFAIAAALDLELEQMDVKTAFLYGDIDGDVYMEQPSEFNDGTGMVCKLNKALYGLKQAPRIWYQTLAAYLEGLGFYPLTSDFGIFVK-----GQTYIAVYVDDLLIAGPSKKEIQELKNALSDRFQMTDLGPCSHYLGMAVTRDRKNRTIRLSQKAYIEKILKDFGMSEAKHQYTPIKTDQIKTVEDYKPTEEIKTWYAKAIGSLIRFLAKPTEAHQRAVKRIMRYLKATIDLCLVYEGEIEPLTG--FTDSDWAGDRETRRSTSGYVFNLGSGAISWSSKRQSSTALLSCEAEYIGQTQATKEAIWLRRLLKELQIAEGEGQAPVATIIYG 1247          
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Match: B5U9F7_SOYBN (Gag-protease-integrase-RT-RNaseH polyprotein n=1 Tax=Glycine max TaxID=3847 RepID=B5U9F7_SOYBN)

HSP 1 Score: 192 bits (489), Expect = 4.490e-50
Identity = 142/425 (33.41%), Postives = 206/425 (48.47%), Query Frame = 1
Query:   19 QAMESPEWDDWRKAEETEMRGMVENFVYKQVARPKDKLVVGTKILYKRKVGQDSKVEKYKCRLVAQGF*QVEDVHYTEKYSLTPSTASIRMLLATTAAKDGELRPFDAEKAFLKADIDEELYLEIPEENQKFSGA--VGWLNKVMYGLVQVGRC*NNKFCGDMATIGFE*GKVDTCLFRKVVDDKAEVLVVVHVDDILAHAKDKVAMDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVEVRR----------------------------QEGKQGTGYVGVRAVV-------------------RFCENPGPAHKKAVMKIMQYLLHTKDWRITYGGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTASGTSKAEYVALSDAVKEVLFLR 1146
            QAM   E + W  A + EM  M  N V+  V  P     +G K ++K K      +E+YK RLVA+GF Q E + Y E +S      S+R++LA  A  D EL+  D + AFL  D++EE+Y++ PE     SG   V  LNK +YGL Q  R    KF G +++ GF+   +D C++ KV   K   LV+ +VDDIL  A D+  +      L + F  KDMGDA Y +G  I R+     L + Q  Y+  ++E  R                            +E  +   Y  V   +                   R+  NPG  H +A  K+++YL  TKD+ + Y  Q   L A  Y+DSDF  C+D+RRS S  + M+A GAISW S  Q + A+ T +AE+V+  +A    ++L+
Sbjct:  805 QAMSCKESNLWYDAMKDEMSSMQSNKVWNLVELPNGAKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFSSNSGEHLVCKLNKSIYGLKQASRQWYLKFHGIISSFGFDENPMDQCIYHKVSGSKICFLVL-YVDDILLAANDRGLLHEVKQFLSKNFDMKDMGDASYVIGIKIHRDRSRGILGLSQETYINKILERFRMKDCSPSVAPIVKGDRFNLNQCPKNDFEREQMKNIPYASVVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWRAAKKVLRYLQGTKDYMLMYR-QTDNLDAIGYSDSDFAGCVDSRRSTSGYIFMMAGGAISWGSVKQSLAATSTMEAEFVSCFEATSHGVWLK 1227          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76023.15285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N6LHI8_9ASTR1.750e-5332.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438DYU4_VITVI7.600e-5332.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A438IQ82_VITVI4.390e-5234.34Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FEW0_VITVI6.210e-5232.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK4.100e-5128.31Integrase catalytic domain-containing protein (Fra... [more]
A0A1C7MSU6_GRIFR5.520e-5129.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9FS65_FAGSY1.220e-5034.19Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A0A9Z683_LYGHE1.820e-5031.97Retrovirus-related Pol polyprotein from transposon... [more]
A0A0B4EZU2_METAF3.310e-5031.00Gag-Pol polyprotein (Fragment) n=2 Tax=Metarhizium... [more]
B5U9F7_SOYBN4.490e-5033.41Gag-protease-integrase-RT-RNaseH polyprotein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76023contigH-elongata_contig76023:310..1722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score104.4
Seed ortholog evalue6.4e-20
Seed eggNOG ortholog5037.XP_001544588.1
EggNOG free text desc.to reverse transcriptase
EggNOG OGs20FR9@147545,38DPC@33154,3B52A@33183,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelOnygenales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1289
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76023.15285.1prot_H-elongata_contig76023.15285.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76023 372..1092 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.5199056-UTR-H-elongata_contig76023:309..3711622931165.5199056-UTR-H-elongata_contig76023:309..371Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76023 310..371 -
1691679725.1064968-UTR-H-elongata_contig76023:309..3711691679725.1064968-UTR-H-elongata_contig76023:309..371Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76023 310..371 -
1622931165.570648-UTR-H-elongata_contig76023:1092..17221622931165.570648-UTR-H-elongata_contig76023:1092..1722Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76023 1093..1722 -
1691679725.1421826-UTR-H-elongata_contig76023:1092..17221691679725.1421826-UTR-H-elongata_contig76023:1092..1722Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76023 1093..1722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.5353622-CDS-H-elongata_contig76023:371..7751622931165.5353622-CDS-H-elongata_contig76023:371..775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76023 372..775 -
1691679725.1259425-CDS-H-elongata_contig76023:371..7751691679725.1259425-CDS-H-elongata_contig76023:371..775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76023 372..775 -
1622931165.5557392-CDS-H-elongata_contig76023:899..10921622931165.5557392-CDS-H-elongata_contig76023:899..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76023 900..1092 -
1691679725.1343842-CDS-H-elongata_contig76023:899..10921691679725.1343842-CDS-H-elongata_contig76023:899..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76023 900..1092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76023.15285.1

>prot_H-elongata_contig76023.15285.1 ID=prot_H-elongata_contig76023.15285.1|Name=mRNA_H-elongata_contig76023.15285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
MDRFAAELGQKFKSKDMGDARYYMGCHITRNHKERELKIDQHLYVESMVE
VRRQEGKQGTGYVGVRAVVRFCENPGPAHKKAVMKIMQYLLHTKDWRITY
GGQGCELCAKAYTDSDFGACLDTRRSMSDAVLMLAKGAISWYSSMQEVTA
SGTSKAEYVALSDAVKEVLFLRQAQQFMELSLRIGAVNVLRIIRGPSS*
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mRNA from alignment at H-elongata_contig76023:310..1722-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76023.15285.1 ID=mRNA_H-elongata_contig76023.15285.1|Name=mRNA_H-elongata_contig76023.15285.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1413bp|location=Sequence derived from alignment at H-elongata_contig76023:310..1722- (Himanthalia elongata Himel1 dioecious)
GAACCAAGGAATCGGCGGCAGGCGATGGAATCGCCGGAATGGGACGATTG GCGAAAAGCAGAGGAAACAGAGATGCGTGGCATGGTCGAGAACTTCGTTT ATAAGCAGGTGGCTCGGCCGAAGGATAAGCTCGTGGTTGGCACAAAAATA CTCTACAAGCGAAAGGTCGGACAGGACAGCAAGGTCGAGAAATACAAGTG CCGGCTTGTAGCTCAAGGGTTCTGACAGGTGGAAGATGTGCACTATACGG AAAAATACTCGCTCACGCCATCGACCGCATCAATTCGGATGCTTTTGGCT ACAACAGCGGCCAAGGACGGTGAGCTGCGCCCTTTCGACGCGGAGAAGGC ATTCTTAAAAGCGGACATCGATGAGGAATTGTATCTTGAGATCCCCGAGG AGAACCAGAAGTTTTCGGGGGCAGTGGGATGGCTGAACAAGGTCATGTAC GGACTCGTACAGGTGGGGAGGTGCTAGAACAACAAGTTCTGCGGCGATAT GGCGACGATTGGATTTGAGTAGGGAAAGGTGGATACATGCTTGTTCCGTA AGGTCGTTGACGACAAGGCGGAAGTGTTGGTAGTCGTACACGTGGACGAT ATTCTTGCTCACGCCAAGGACAAAGTGGCTATGGATAGATTTGCGGCTGA GCTTGGACAAAAGTTCAAATCGAAGGACATGGGTGACGCCAGGTACTACA TGGGCTGTCACATTACTAGGAACCACAAGGAGCGTGAACTGAAGATTGAC CAACACTTGTACGTGGAGTCGATGGTGGAAGTTCGACGTCAAGAAGGGAA GCAAGGTACCGGCTACGTCGGGGGTGCCAACACTCTCGAAGGCGGACGAG CCACGCAACCCGGAGGAAAAGGAGGAAATGAGGAAGTTCCCATACCGGGA AGCTATGTGGATGGCGACGATGACACGGCCGGACATTGCGAGCACAGTAC GCGCTGTGGTCAGGTTCTGTGAAAACCCTGGGCCGGCGCATAAGAAGGCA GTGATGAAAATTATGCAGTATCTCCTTCACACGAAGGATTGGAGGATTAC ATACGGTGGACAGGGCTGTGAACTCTGCGCGAAGGCATACACGGACTCGG ATTTTGGAGCCTGTCTGGATACGAGACGATCGATGTCAGATGCGGTGTTG ATGCTGGCGAAGGGGGCGATCAGCTGGTACTCAAGTATGCAAGAAGTGAC AGCATCGGGTACCTCGAAGGCAGAGTACGTTGCTTTATCAGACGCGGTAA AGGAGGTTCTATTTTTGAGACAAGCCCAGCAGTTCATGGAACTGTCGCTG AGGATTGGTGCAGTGAATGTGTTGAGGATAATAAGGGGGCCATCAAGCTA GCCACCGACAAGAATGCCAGTCGTAGGACAAAACACATTGATGTGAAACA TCATATGGTGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig76023:310..1722-

>mRNA_H-elongata_contig76023.15285.1 ID=mRNA_H-elongata_contig76023.15285.1|Name=mRNA_H-elongata_contig76023.15285.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig76023:310..1722- (Himanthalia elongata Himel1 dioecious)
ATGGATAGATTTGCGGCTGAGCTTGGACAAAAGTTCAAATCGAAGGACAT
GGGTGACGCCAGGTACTACATGGGCTGTCACATTACTAGGAACCACAAGG
AGCGTGAACTGAAGATTGACCAACACTTGTACGTGGAGTCGATGGTGGAA
GTTCGACGTCAAGAAGGGAAGCAAGGTACCGGCTACGTCGGGGATGGATA
GATTTGCGGCTGAGCTTGGACAAAAGTTCAAATCGAAGGACATGGGTGAC
GCCAGGTACTACATGGGCTGTCACATTACTAGGAACCACAAGGAGCGTGA
ACTGAAGATTGACCAACACTTGTACGTGGAGTCGATGGTGGAAGTTCGAC
GTCAAGAAGGGAAGCAAGGTACCGGCTACGTCGGGGTACGCGCTGTGGTC
AGGTTCTGTGAAAACCCTGGGCCGGCGCATAAGAAGGCAGTGATGAAAAT
TATGCAGTATCTCCTTCACACGAAGGATTGGAGGATTACATACGGTGGAC
AGGGCTGTGAACTCTGCGCGAAGGCATACACGGACTCGGATTTTGGAGCC
TGTCTGGATACGAGACGATCGATGTCAGATGCGGTGTTGATGCTGGCGAA
GGGGGCGATCAGCTGGTACTCAAGTATGCAAGAAGTGACAGCATCGGGTA
CCTCGAAGGCAGAGTACGTTGCTTTATCAGACGCGGTAAAGGAGGTTCTA
TTTTTGAGACAAGCCCAGCAGTTCATGGAACTGTCGCTGAGGATTGGTGC
AGTGAATGTGTTGAGGATAATAAGGGGGCCATCAAGCTAGTACGCGCTGT
GGTCAGGTTCTGTGAAAACCCTGGGCCGGCGCATAAGAAGGCAGTGATGA
AAATTATGCAGTATCTCCTTCACACGAAGGATTGGAGGATTACATACGGT
GGACAGGGCTGTGAACTCTGCGCGAAGGCATACACGGACTCGGATTTTGG
AGCCTGTCTGGATACGAGACGATCGATGTCAGATGCGGTGTTGATGCTGG
CGAAGGGGGCGATCAGCTGGTACTCAAGTATGCAAGAAGTGACAGCATCG
GGTACCTCGAAGGCAGAGTACGTTGCTTTATCAGACGCGGTAAAGGAGGT
TCTATTTTTGAGACAAGCCCAGCAGTTCATGGAACTGTCGCTGAGGATTG
GTGCAGTGAATGTGTTGAGGATAATAAGGGGGCCATCAAGCTAG
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