mRNA_H-elongata_contig75975.15280.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75975.15280.1
Unique NamemRNA_H-elongata_contig75975.15280.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig75975.15280.1 vs. uniprot
Match: A0A1Y1LKC7_PHOPY (USP domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LKC7_PHOPY)

HSP 1 Score: 121 bits (304), Expect = 2.490e-32
Identity = 59/130 (45.38%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    1 QEHRRAYKEMSLWRLPPVLVLHLKRFSYTYGGWASSGEKIESFVTFPVSELDPPGSPGEVKAKTEDVYDLCGVVNHHGMLNGGHYTAFALNERDGRWYDFSDDQVSTIDHEEDLVTAAAYVLFYRRRGRG 390
            +EHRRA K+  LW+ P +LV HLKRFS +  GW    +K++  V FP+  LD      + +    ++YDL GV +H+G L GGHYTA+A N  DGRWY+++D  V  +     ++T+AAY+LFYRRR  G
Sbjct:   59 KEHRRASKKFDLWKTPDILVAHLKRFSSS--GWRR--DKLDVLVDFPIEGLDLTSRVIQKEDGKAEIYDLIGVDDHYGGLGGGHYTAYAKNFVDGRWYNYNDSSVHVVSDPTSVITSAAYLLFYRRRSSG 184          
BLAST of mRNA_H-elongata_contig75975.15280.1 vs. uniprot
Match: A0A2C5XUR1_9HYPO (Uncharacterized protein n=2 Tax=Ophiocordyceps australis TaxID=1399860 RepID=A0A2C5XUR1_9HYPO)

HSP 1 Score: 127 bits (319), Expect = 1.710e-31
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    1 QEHRRAYKEMSLWRLPPVLVLHLKRFSYTYGGWASSGEKIESFVTFPVSELDPPGSPGEVKAKTEDVYDLCGVVNHHGMLNGGHYTAFALNERDGRWYDFSDDQVSTIDHEEDLVTAAAYVLFYRRRGRG 390
            +EHRRA K+  LW+ P +LV HLKRFS +  GW    EK+++FV FPV  LD      + +    ++YDL  V +H+G L GGHYTA+A N  DGRWY F+D  V  +     +VT+AAY+LFYRRR  G
Sbjct: 1097 KEHRRASKKFDLWKTPDILVAHLKRFSNS--GWRR--EKLDTFVDFPVENLDLTSRVVQKEDGKNEIYDLIAVDDHYGGLGGGHYTAYAKNFMDGRWYSFNDSSVHAVSDAGSVVTSAAYLLFYRRRSSG 1222          
BLAST of mRNA_H-elongata_contig75975.15280.1 vs. uniprot
Match: W9CBM0_SCLBF (Uncharacterized protein n=1 Tax=Sclerotinia borealis (strain F-4128) TaxID=1432307 RepID=W9CBM0_SCLBF)

HSP 1 Score: 127 bits (319), Expect = 1.730e-31
Identity = 62/130 (47.69%), Postives = 86/130 (66.15%), Query Frame = 1
Query:    1 QEHRRAYKEMSLWRLPPVLVLHLKRFSYTYGGWASSG---EKIESFVTFPVSELDPPGSPGEVKAKTEDVYDLCGVVNHHGMLNGGHYTAFALNERDGRWYDFSDDQVSTIDHEEDLVTAAAYVLFYRRR 381
            +EHRRA K+  +WR P +L++HLKRFS       SSG   +K++  V FP++ELD      E +   E++YDL  + NHHG L GGHYTAFA N  DG WY+++D  V+ I +   ++TA+AY+LFYRRR
Sbjct: 1330 KEHRRASKKFEIWRTPDILIVHLKRFS-------SSGLRRDKLDGLVEFPINELDLSSRVIESQDGKEEIYDLIAIDNHHGGLGGGHYTAFAKNFVDGEWYEYNDTSVAKITNPSRMITASAYLLFYRRR 1452          
BLAST of mRNA_H-elongata_contig75975.15280.1 vs. uniprot
Match: A0A197KFN0_9FUNG (Ubiquitinyl hydrolase 1 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KFN0_9FUNG)

HSP 1 Score: 127 bits (318), Expect = 2.350e-31
Identity = 61/127 (48.03%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 QEHRRAYKEMSLWRLPPVLVLHLKRFSYTYGGWASSGEKIESFVTFPVSELDPPGSPGEVKAKTEDVYDLCGVVNHHGMLNGGHYTAFALNERDGRWYDFSDDQVSTIDHEEDLVTAAAYVLFYRRR 381
            ++H++A K++ +WRLP +LV+HLKRFS+T   W    +KI++ V FP+  LD  G   + + + E+VYDL GV NH G L GGHYTA+A NE+ G WY+F D  VS + + E + +++AY+LFYRRR
Sbjct: 1140 KKHQQATKKLDIWRLPDILVVHLKRFSHTRT-WR---DKIDALVDFPIHGLDLSGKILKEEDRNENVYDLFGVSNHMGGLGGGHYTAYAKNEKTGDWYNFDDSHVSAVGNVESIKSSSAYLLFYRRR 1262          
BLAST of mRNA_H-elongata_contig75975.15280.1 vs. uniprot
Match: A0A7S0TY16_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TY16_HEMAN)

HSP 1 Score: 118 bits (295), Expect = 3.990e-31
Identity = 67/132 (50.76%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    1 QEHRRAYKEMSLWRLPPVLVLHLKRFSYTYGGWASS---GEKIESFVTFPVSELDPPGSPGEVKAKTED-VYDLCGVVNHHGMLNGGHYTAFALNERDGRWYDFSDDQVSTIDHEEDLVTAAAYVLFYRRRG 384
            ++H+RA KEM+LW  P  L++HLKRFS   GG + S    +KIE+ VTFPV  LD          + +D VYDL GVVNH G    GHYTA+ L+  DG+W+ F D  VS      D+VT AAYVLFYRRRG
Sbjct:   30 KQHQRASKEMALWSAPTELIIHLKRFSQHEGGSSFSLFSSDKIETLVTFPVKGLDISHYVRSPSLQGQDLVYDLHGVVNHFGGSGFGHYTAYCLSPGDGKWHLFDDSTVSPAS-ASDVVTPAAYVLFYRRRG 160          
BLAST of mRNA_H-elongata_contig75975.15280.1 vs. uniprot
Match: A0A0Q3L0A9_BRADI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3L0A9_BRADI)

HSP 1 Score: 124 bits (311), Expect = 1.990e-30
Identity = 57/126 (45.24%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    1 QEHRRAYKEMSLWRLPPVLVLHLKRFSYTYGGWASSGEKIESFVTFPVSELDPPGSPGEVKAKTEDVYDLCGVVNHHGMLNGGHYTAFALNERDGRWYDFSDDQVSTIDHEEDLVTAAAYVLFYRR 378
            +EHR+A K++ LWRLP +L++HLKRFSY+      +  K+++FV FP+ +LD      +   +  + Y L  V NH+G + GGHYTA+  +E + RWYDF D  V  +D E+ + T+AAYVLFYRR
Sbjct:  759 KEHRQASKKLDLWRLPEILIIHLKRFSYS----RYTKNKLDTFVDFPIHDLDLSKFVRDRSGQLSNHYQLYAVSNHYGSMGGGHYTAYVFHEGEKRWYDFDDRSVERVDKEDSIKTSAAYVLFYRR 880          
BLAST of mRNA_H-elongata_contig75975.15280.1 vs. uniprot
Match: A0A2N6NRR1_BEABA (Ubiquitin carboxyl-terminal hydrolase 12 n=5 Tax=Beauveria TaxID=5581 RepID=A0A2N6NRR1_BEABA)

HSP 1 Score: 124 bits (311), Expect = 2.060e-30
Identity = 60/127 (47.24%), Postives = 84/127 (66.14%), Query Frame = 1
Query:    1 QEHRRAYKEMSLWRLPPVLVLHLKRFSYTYGGWASSGEKIESFVTFPVSELDPPGSPGEVKAKTEDVYDLCGVVNHHGMLNGGHYTAFALNERDGRWYDFSDDQVSTIDHEEDLVTAAAYVLFYRRR 381
            +EHRRA K+  LW+ P  LV HLKRFS +  GW    +K++  V FP+ ELD      E +    +VYDL  V NH+G L GGHYTA+A N  DG+WY+++D  VS + + + ++T+AAY+LFY+RR
Sbjct: 1265 KEHRRASKKFDLWKTPNYLVTHLKRFSSS--GWRR--DKLDVLVDFPIEELDLTARVVEKEDGKSEVYDLIAVDNHYGGLGGGHYTAYAKNFVDGKWYNYNDSSVSVVSNTQSIITSAAYLLFYKRR 1387          
BLAST of mRNA_H-elongata_contig75975.15280.1 vs. uniprot
Match: A0A453JK26_AEGTS (USP domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453JK26_AEGTS)

HSP 1 Score: 120 bits (301), Expect = 2.580e-30
Identity = 55/126 (43.65%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    1 QEHRRAYKEMSLWRLPPVLVLHLKRFSYTYGGWASSGEKIESFVTFPVSELDPPGSPGEVKAKTEDVYDLCGVVNHHGMLNGGHYTAFALNERDGRWYDFSDDQVSTIDHEEDLVTAAAYVLFYRR 378
            +EHR+A K++ LWRLP +L++HLKRFSY+      +  K++++V FP+ +LD      +   +  + Y L  V NH+G + GGHYTA+  N+   +WYDF D  VS +++E+ + T+AAYVLFYRR
Sbjct:  209 KEHRQASKKLDLWRLPEILIIHLKRFSYS----RYTKNKLDTYVDFPIHDLDLSSYIRDRSGQMSNHYQLYAVSNHYGSMGGGHYTAYVYNDGKKKWYDFDDRCVSGLENEDSIKTSAAYVLFYRR 330          
BLAST of mRNA_H-elongata_contig75975.15280.1 vs. uniprot
Match: A0A446TTW2_TRITD (USP domain-containing protein n=3 Tax=Triticinae TaxID=1648030 RepID=A0A446TTW2_TRITD)

HSP 1 Score: 120 bits (301), Expect = 2.580e-30
Identity = 55/126 (43.65%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    1 QEHRRAYKEMSLWRLPPVLVLHLKRFSYTYGGWASSGEKIESFVTFPVSELDPPGSPGEVKAKTEDVYDLCGVVNHHGMLNGGHYTAFALNERDGRWYDFSDDQVSTIDHEEDLVTAAAYVLFYRR 378
            +EHR+A K++ LWRLP +L++HLKRFSY+      +  K++++V FP+ +LD      +   +  + Y L  V NH+G + GGHYTA+  N+   +WYDF D  VS +++E+ + T+AAYVLFYRR
Sbjct:  195 KEHRQASKKLDLWRLPEILIIHLKRFSYS----RYTKNKLDTYVDFPIHDLDLSSYIRDRSGQMSNHYQLYAVSNHYGSMGGGHYTAYVYNDGKKKWYDFDDRCVSGLENEDSIKTSAAYVLFYRR 316          
BLAST of mRNA_H-elongata_contig75975.15280.1 vs. uniprot
Match: A0A545VXI3_9HYPO (Ubiquitin C-terminal hydrolase n=1 Tax=Cordyceps javanica TaxID=43265 RepID=A0A545VXI3_9HYPO)

HSP 1 Score: 123 bits (308), Expect = 5.240e-30
Identity = 60/130 (46.15%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    1 QEHRRAYKEMSLWRLPPVLVLHLKRFSYTYGGWASSGEKIESFVTFPVSELDPPGSPGEVKAKTEDVYDLCGVVNHHGMLNGGHYTAFALNERDGRWYDFSDDQVSTIDHEEDLVTAAAYVLFYRRRGRG 390
            +EHRRA K+  LW+ P  LV HLKRFS +  GW    +K++  V FP+ ELD      E +    +VYDL  V +H+G L GGHYTA+A N  DGRWY+++D   S +   + ++T+AAY+LFY+RR  G
Sbjct: 1300 KEHRRASKKFDLWKTPDYLVAHLKRFSSS--GWRR--DKLDVLVDFPIEELDLTARVVEKEEGKSEVYDLIAVDDHYGGLGGGHYTAYAKNFVDGRWYNYNDSSASLVSDPQSVITSAAYLLFYKRRASG 1425          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75975.15280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1LKC7_PHOPY2.490e-3245.38USP domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A2C5XUR1_9HYPO1.710e-3148.46Uncharacterized protein n=2 Tax=Ophiocordyceps aus... [more]
W9CBM0_SCLBF1.730e-3147.69Uncharacterized protein n=1 Tax=Sclerotinia boreal... [more]
A0A197KFN0_9FUNG2.350e-3148.03Ubiquitinyl hydrolase 1 n=1 Tax=Linnemannia elonga... [more]
A0A7S0TY16_HEMAN3.990e-3150.76Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0Q3L0A9_BRADI1.990e-3045.24Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Brac... [more]
A0A2N6NRR1_BEABA2.060e-3047.24Ubiquitin carboxyl-terminal hydrolase 12 n=5 Tax=B... [more]
A0A453JK26_AEGTS2.580e-3043.65USP domain-containing protein n=1 Tax=Aegilops tau... [more]
A0A446TTW2_TRITD2.580e-3043.65USP domain-containing protein n=3 Tax=Triticinae T... [more]
A0A545VXI3_9HYPO5.240e-3046.15Ubiquitin C-terminal hydrolase n=1 Tax=Cordyceps j... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75975contigH-elongata_contig75975:738..1794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score119.4
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog78898.MVEG_06175T0
KEGG koko:K11835
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0016787,GO:0019538,GO:0019783,GO:0036459,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044464,GO:0070011,GO:0071704,GO:0101005,GO:0140096,GO:1901564
EggNOG free text desc.Mortierella verticillata NRRL 6337
EggNOG OGs1GRTT@112252,38FGF@33154,3NU7E@4751,COG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size390
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75975.15280.1prot_H-elongata_contig75975.15280.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75975 765..1794 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.0051749-UTR-H-elongata_contig75975:737..7641622931165.0051749-UTR-H-elongata_contig75975:737..764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75975 738..764 +
1691679724.8547482-UTR-H-elongata_contig75975:737..7641691679724.8547482-UTR-H-elongata_contig75975:737..764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75975 738..764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.0165148-CDS-H-elongata_contig75975:764..8831622931165.0165148-CDS-H-elongata_contig75975:764..883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75975 765..883 +
1691679724.8706813-CDS-H-elongata_contig75975:764..8831691679724.8706813-CDS-H-elongata_contig75975:764..883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75975 765..883 +
1622931165.0293674-CDS-H-elongata_contig75975:1550..17941622931165.0293674-CDS-H-elongata_contig75975:1550..1794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75975 1551..1794 +
1691679724.8794107-CDS-H-elongata_contig75975:1550..17941691679724.8794107-CDS-H-elongata_contig75975:1550..1794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75975 1551..1794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75975.15280.1

>prot_H-elongata_contig75975.15280.1 ID=prot_H-elongata_contig75975.15280.1|Name=mRNA_H-elongata_contig75975.15280.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MSLWRLPPVLVLHLKRFSYTYGGWASSGEKIESFVTFPVSELDPPGSPGE
VKAKTEDVYDLCGVVNHHGMLNGGHYTAFALNERDGRWYDFSDDQVSTID
HEEDLVTAAAYVLFYRRRGRG
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mRNA from alignment at H-elongata_contig75975:738..1794+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75975.15280.1 ID=mRNA_H-elongata_contig75975.15280.1|Name=mRNA_H-elongata_contig75975.15280.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1057bp|location=Sequence derived from alignment at H-elongata_contig75975:738..1794+ (Himanthalia elongata Himel1 dioecious)
CAGGAGCACAGGCGCGCGTACAAGGAAATGAGCCTGTGGCGGCTTCCACC GGTGCTGGTCTTGCACCTTAAGCGCTTCTCGTACACGTACGGTGGCTGGG CCTCCAGCGGCGAAAAGATCGAGAGCTTCGTCACCTTCCCCGTCAGGTGC GGCCGCGTTAGCGTTGAGTCTCTTCCGCTTTCGAGACAACAGTGACCCAA CCACCTGCCCTACTGACCAATAAGCTTCGCGAAGCACACGGGAAAGGAAA CTTGTGGCAAATAAAAAATAATTCAATCTCGTACGACGTTTTGCTGCGGC GTTCGTAAAGAGATACCCTACCCCGTGCGTGCCCGTTTCGTCCCAGCGCC AATGTCGCCTTCGCTGCTTTCGTAAATGATGTACCAACGTTTATCAGTGT GGTTTTTCCCTTAGGGTGTAGACATTTGCTTGAAGTATTGTTGTATTTGT ATGTATATATTGTAAATATTTTTCAGATATATTTCATTTTTTGAGTAAAT GTTACGTTATCCCCGCCCATCTTGAGCTCGAGTCCGTCGCACCCTCCGCG CGCCTTACCAGGGGGTTGGACATGCGCCATCTGGAGCGCGCCTCGCGAGC GCGCAGCCGCGAGAGGCAGCAGCATTCCGGAGAAACCGGTGCACAAACAC ACGCTCTTTGCGGTAGCGAAGATAGTGCCATGGACGACTGGGTCGTCGTA AACTCCCAGTGGCGAGCTCCCCACGAAGGAACCGGAAGGGTTTCCTCCCT CAAGACTGTGAACGATCGCGCGCAGAACGCGGAGAGCGGAGACGGCGTTC CGTCCACCCGCAGCGAACTCGACCCGCCGGGCTCGCCGGGAGAGGTCAAG GCCAAGACCGAAGACGTGTACGATCTCTGCGGCGTGGTGAACCACCACGG GATGCTGAACGGGGGCCACTACACGGCGTTCGCGTTGAACGAGCGGGACG GCCGCTGGTACGATTTCTCGGACGACCAAGTGTCGACCATCGACCACGAG GAAGATCTCGTGACCGCTGCCGCTTACGTACTGTTCTACCGCAGGAGGGG GAGGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig75975:738..1794+

>mRNA_H-elongata_contig75975.15280.1 ID=mRNA_H-elongata_contig75975.15280.1|Name=mRNA_H-elongata_contig75975.15280.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig75975:738..1794+ (Himanthalia elongata Himel1 dioecious)
ATGAGCCTGTGGCGGCTTCCACCGGTGCTGGTCTTGCACCTTAAGCGCTT
CTCGTACACGTACGGTGGCTGGGCCTCCAGCGGCGAAAAGATCGAGAGCT
TCGTCACCTTCCCCGTCAGATGAGCCTGTGGCGGCTTCCACCGGTGCTGG
TCTTGCACCTTAAGCGCTTCTCGTACACGTACGGTGGCTGGGCCTCCAGC
GGCGAAAAGATCGAGAGCTTCGTCACCTTCCCCGTCAGCGAACTCGACCC
GCCGGGCTCGCCGGGAGAGGTCAAGGCCAAGACCGAAGACGTGTACGATC
TCTGCGGCGTGGTGAACCACCACGGGATGCTGAACGGGGGCCACTACACG
GCGTTCGCGTTGAACGAGCGGGACGGCCGCTGGTACGATTTCTCGGACGA
CCAAGTGTCGACCATCGACCACGAGGAAGATCTCGTGACCGCTGCCGCTT
ACGTACTGTTCTACCGCAGGAGGGGGAGGGGCCGAACTCGACCCGCCGGG
CTCGCCGGGAGAGGTCAAGGCCAAGACCGAAGACGTGTACGATCTCTGCG
GCGTGGTGAACCACCACGGGATGCTGAACGGGGGCCACTACACGGCGTTC
GCGTTGAACGAGCGGGACGGCCGCTGGTACGATTTCTCGGACGACCAAGT
GTCGACCATCGACCACGAGGAAGATCTCGTGACCGCTGCCGCTTACGTAC
TGTTCTACCGCAGGAGGGGGAGGGGC
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