mRNA_H-elongata_contig7567.15256.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7567.15256.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE) HSP 1 Score: 311 bits (797), Expect = 2.040e-91 Identity = 185/319 (57.99%), Postives = 207/319 (64.89%), Query Frame = 3
Query: 255 FSPFLFFGCELKNRFDGTLFRFPLRVGDVARDSEISHASYTPDVVVELLNQFKETAHRYLLFMRHVQRIEVYTFKTG--DPAPVLWYDVGVTKREPRSGWLTVPYFVSGHPRRPISKEAFYNKLAQTPDSALPKVDQLVTITFRQEAERVKRVAALGTPAATLLNSVASPATASSSTPTWGRGTEKGDDKGVE-----VGGGSESESELVEVGDVGAEGGSXXXXXXXXXDESRKA--TSIVDVFLVCAAIGGGQAKAMACHPEGRAMKFIPWGGVAAHVSRNSQPPSAFEGHAFCFLPLPVTTLLPVHVNGFFELSTN 1184
FSP+LFFGCELK F GTLFRFPLR VARDSEISHASY+P+ V+ LLNQFKE A RYLLF+RHV+RIE+YT G + PVL Y V VTKR+P +GW VP FV+G PRRP+SKEAFY+KL QTPD+ LPKV+Q+VTITFR+E R D+ + GG +G XX XXXXXX K TSIVDVFLVCAAIGGG AK MAC PE R MK IPWGGVAAH+SRNS PP FEGHAFCFLPLPV TLLPVHVNGFFELS+N
Sbjct: 549 FSPYLFFGCELKKHFKGTLFRFPLRTATVARDSEISHASYSPESVMNLLNQFKEQASRYLLFLRHVERIEMYTVGDGADNKTPVLQYSVEVTKRDPPTGWAAVPTFVTGPPRRPLSKEAFYSKLGQTPDAVLPKVEQMVTITFREEGARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDLRGLTSATGGXXXXXXXXXXXXXALVDGXXXXKXXXXXXXXXXKEGPTSIVDVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSN 867
BLAST of mRNA_H-elongata_contig7567.15256.1 vs. uniprot
Match: D8LJG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG5_ECTSI) HSP 1 Score: 306 bits (785), Expect = 7.880e-90 Identity = 179/314 (57.01%), Postives = 198/314 (63.06%), Query Frame = 3
Query: 255 FSPFLFFGCELKNRFDGTLFRFPLRVGDVARDSEISHASYTPDVVVELLNQFKETAHRYLLFMRHVQRIEVYTFKTG--DPAPVLWYDVGVTKREPRSGWLTVPYFVSGHPRRPISKEAFYNKLAQTPDSALPKVDQLVTITFRQEAERVKRVAALGTPAATLLNSVASPATASSSTPTWGRGTEKGDDKGVEVGGGSESESELVEVGDVGAEGGSXXXXXXXXXDESRKATSIVDVFLVCAAIGGGQAKAMACHPEGRAMKFIPWGGVAAHVSRNSQPPSAFEGHAFCFLPLPVTTLLPVHVNGFFELSTNRR 1190
FSP+LFFGCELK F GTLFRFPLR VARDSEISHASY+P V+ LLNQFKE A RYLLF+RHV+RIE+YT G + PVL Y V VTKR+P +GW VP FV+G PRRP+SKEAFY+KL QTPD+ LPKV+Q+VTITFR+E R + XXX XX TSIVDVFLVCAAIGGG AK MAC PE R MK IPWGGVAAH+SRNS PP FEGHAFCFLPLPV TLLPVHVNGFFELS+NRR
Sbjct: 1210 FSPYLFFGCELKKHFKGTLFRFPLRTATVARDSEISHASYSPGSVMNLLNQFKEQASRYLLFLRHVERIEMYTVGDGVDNKTPVLQYSVEVTKRDPPTGWAAVPTFVTGPPRRPLSKEAFYSKLGQTPDAVLPKVEQMVTITFREEGAR-RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVVXXAGGKEGPTSIVDVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSNRR 1522
BLAST of mRNA_H-elongata_contig7567.15256.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA) HSP 1 Score: 223 bits (568), Expect = 7.470e-61 Identity = 144/347 (41.50%), Postives = 176/347 (50.72%), Query Frame = 3
Query: 255 FSPFLFFGCELKNRFDGTLFRFPLRVGDVARDSEISHASYTPDVVVELLNQFKETAHRYLLFMRHVQRIEVYTFKTGDPAP-------------------VLWYDVGVTKRE----PR------------SGWLTVPYFVSGHPRRPISKEAFYNKLAQTPDSALPKVDQLVTITFRQEAERVKRVAALGTPAATLLNSVASPATASSSTPTWGRGTEKGDDKGVEVGGGSESESELVEVGDVGAEGGSXXXXXXXXXDESRKATSIVDVFLVCAAIGGGQAKAMACHPEGRAMKFIPWGGVAAHVSRNSQPPSAFEGHAFCFLPLPVTTLLPVHVNGFFELSTNRR 1190
FSP+L FGC+ K RF GTLFRFPLR VARDSEISH Y P V ELL+ FKETAHR+LLF+R VQRIEVY D AP V+W +V + PR W +P F+ SKEAFY++LA TP+ LP+ Q VTI F+ + AA P A + +PATA S+TP+ S E I DVF+VC +G G+A+A AC P+ R +KF+PWGGVAAH++RN +P G AFCFLPLPV LPVHVNG+FELS+NRR
Sbjct: 1848 FSPYLHFGCDFKKRFPGTLFRFPLRTKAVARDSEISHTCYGPHEVKELLDGFKETAHRFLLFLRSVQRIEVYVLGDEDEAPRCVDPKYFNLNLLRRDSSAVVWMEVRSVAAQSGCIPRLQHHVEIAHRSNQQWDAIPRFIKEATGGSNSKEAFYSRLAHTPEGQLPRTLQTVTINFKHAPQLRAGAAA---PLAITAEAGDTPATAPSATPSTAXXXXX---------------XXXXXXXXXXXXXPSAGAALALTAPEGPANEDIEDVFMVCVQLGAGRARAFACDPQQRDLKFLPWGGVAAHLTRNGKPIERTRGKAFCFLPLPVDAGLPVHVNGYFELSSNRR 2176
BLAST of mRNA_H-elongata_contig7567.15256.1 vs. uniprot
Match: A0A7S3QAL4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAL4_9STRA) HSP 1 Score: 182 bits (463), Expect = 6.250e-47 Identity = 117/349 (33.52%), Postives = 160/349 (45.85%), Query Frame = 3
Query: 261 PFLFFGCELKNRFDGTLFRFPLRVGDVARDSEISHASYTPDVVV-ELLNQFKETAHRYLLFMRHVQRIEVYTFKTGDPAPVLWY--DVGV--------TKREPRSG----------------------------WLTVPYFVSGHPRRPISKEAFYNKLAQTPDSALPKVDQLVTITFRQEAERVKRVAALGTPAATLLNSVASPATASSSTPTWGRGTEKGDDKGVEVGGGSESESELVEVGDVGAEGGSXXXXXXXXXDESRKATSIVDVFLVCAAIGGGQAKAMACHPEGRAMKFIPWGGVAAHVSRNSQPPSAFEGHAFCFLPLPVTTLLPVHVNGFFELSTNRR 1190
P+ FG ++K RF+GTLFRFP R A++SEIS Y DV EL++ FK + +LF+RHV+R+E Y D AP L Y DVG KR S W ++ F+SG+ +PISKEAFY+KL +TP+ LP+ LVTITF + + + + + E R+ T D +L+C+A+G GQ +AMAC+P+ R +KF+PWG VA H++RN + P G+AFCFLPLP T VH+NG+FELS NRR
Sbjct: 1630 PYCLFGNDMKQRFNGTLFRFPFRNEKTAKESEISKKQYGDDVATKELIDSFKNVISKVVLFLRHVKRVEFYVEGESDQAPKLQYYADVGERKALSETHAKRSSTSNMSGLESIRSLANSAVFGGSTTQPIQSDHWNSISNFISGNESQPISKEAFYSKLLRTPEQQLPQTKHLVTITFGENTQFTQETSNIA---------------------------------------------------------------------EERQITR-TDKYLICSALGSGQCRAMACNPKHRDLKFLPWGSVAVHLTRNEESPPNERGNAFCFLPLPSETGFAVHINGYFELSANRR 1908
BLAST of mRNA_H-elongata_contig7567.15256.1 vs. uniprot
Match: A0A7S2VVU2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVU2_9STRA) HSP 1 Score: 176 bits (445), Expect = 1.480e-44 Identity = 111/316 (35.13%), Postives = 153/316 (48.42%), Query Frame = 3
Query: 255 FSPFLFFGCELKNRFDGTLFRFPLRVGDVARDSEISHASYTPDVVVELLNQFKETAHRYLLFMRHVQRIEVYTFKTGDPAPVLWYDVGVTKREPRSG----WLTVPYFVSGHPRRPISKEAFYNKLAQTPDSALPKVDQLVTITFRQEAERVKRVAALGTPAATLLNSVASPATASSSTPTWGRGTEKGDDKGVEVGGGSESESELVEVGDVGAEGGSXXXXXXXXXDESRKATSIVDVFLVCAAIGGGQAKAMACHPEGRAMKFIPWGGVAAHVSRNSQPPSAFEGHAFCFLPLPVTTLLPVHVNGFFELSTNRR 1190
F P+ FGC++K+RF GTLFRFPLR A +SEIS ++ + ELL+ F+ T ++LLF+R+V+ +EVY +P L Y V R+P + W V F++G P P+SK+AFY+KL TP+++LP+ LVTI+F STP+ A + D ++VC +GG + K AC + R MKF+PWGGVAA +S+ G+AFCFLPLPV T +PVHVNG+FELS NRR
Sbjct: 1267 FLPYCKFGCDMKSRFKGTLFRFPLRDQVTAVESEISKTTFGDRELQELLDTFQSTLPKFLLFLRNVKTVEVYLEDQNSASPSLLYSATVASRKPLTKPPTKWSAVSDFITGPPSNPLSKQAFYSKLQATPENSLPRSHHLVTISF--------------------------------STPS---------------------------------------------------APTEEDKYIVCVGLGGRKCKEFACDEKYRHMKFLPWGGVAAKMSKT------LRGNAFCFLPLPVETGMPVHVNGYFELSANRR 1493
BLAST of mRNA_H-elongata_contig7567.15256.1 vs. uniprot
Match: A0A7S2UD61_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD61_9STRA) HSP 1 Score: 169 bits (429), Expect = 1.890e-42 Identity = 105/328 (32.01%), Postives = 151/328 (46.04%), Query Frame = 3
Query: 258 SPFLFFGCELKNRFDGTLFRFPLRVGDVARDSEISHASYTPDVVVE-LLNQFKETAHRYLLFMRHVQRIEVYTF-KTGDPAPVLWYDVGVTKRE----------PRSGWLTVPYFVSGHPRRPISKEAFYNKLAQTPDSALPKVDQLVTI-----TFRQEAERVKRVAALGTPAATLLNSVASPATASSSTPTWGRGTEKGDDKGVEVGGGSESESELVEVGDVGAEGGSXXXXXXXXXDESRKATSIVDVFLVCAAIGGGQAKAMACHPEGRAMKFIPWGGVAAHVSRNSQPPSAFEGHAFCFLPLPVTTLLPVHVNGFFELSTNRR 1190
SP+ FGC+++ +F GTLFRFP R A +SEIS D ++ L++ FK+ +YLLF+R+V+RIEVYT D P L Y VTKR+ +GW ++ F+ G P++KE+FY+KL +TP LPK +V+I T + + + +K D+K E+ +I D +L+C A+GGG + C R +K +PWGG AA + R+ G+AFC LPLP T+LP+H+NG FELS NRR
Sbjct: 440 SPYCHFGCDMQTKFQGTLFRFPFRTESTAAESEISKTQCAKDGAIDGLVDSFKKVISKYLLFLRNVKRIEVYTEGPNADDKPQLAYFAAVTKRDVVYEKTANSNSATGWNSITDFIKGPQSHPLTKESFYSKLQRTPVDMLPKTKHVVSIQSVYNTMKPDIQSIKS-----------------------------------DNKEAH--------------------------------QETNDPVTITDEYLICMALGGGSCRTFVCEENNRDLKLLPWGGCAALLRRDGSDAPLLNGNAFCGLPLPAQTMLPLHLNGMFELSANRR 700
BLAST of mRNA_H-elongata_contig7567.15256.1 vs. uniprot
Match: A0A329RM56_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RM56_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.720e-38 Identity = 118/322 (36.65%), Postives = 159/322 (49.38%), Query Frame = 3
Query: 255 FSPFL-FFGCELKNRFDGTLFRFPLRVGDVARDSEISHASYTPDVVVELLNQFKETAHRYLLFMRHVQRIEVYTFKTGDPAPVLWYDVGVTKREPRSGWLTVPYFVSGHPRRPIS---------KEAFYNKLAQTPDSALPKVDQLVTITFRQEAERVKRVAALGTPAATLLNSVASPATASSSTPTWGRGTEKGDDKGVEVGGGSESESELVEVGDVGAEGGSXXXXXXXXXDESRKATSIVDVFLVCAAIGGGQAKAMACHPEGRAMKFIPWGGVAAHVSRNSQPPSAFEGHAFCFLPLPVTTLLPVHVNGFFELSTNRR 1190
F+PF FGC+L++ + GTLFRFPLR +A SEI Y+ +VEL F+ + LLF+R+V+++EVY D PVL YD V K + W + F+ H P S K FY +L TP LP V Q++ I RQ+ E + ++GR G+ + S+ ESE VE+ D+ +ES + +LVC IGGG+A+ MAC E ++K IPW G+A SR P+ EG AFCFLPLPV LPVHVNG+FELS+NRR
Sbjct: 1688 FAPFKGVFGCDLEHHYKGTLFRFPLRDSSLAESSEIKRRGYSHREIVELFKSFQASIIDTLLFLRNVRKVEVYYQPEIDQPPVLLYDAEVPKEDRGESWREIDRFMR-HNESPSSTSGTTELSAKREFYARLRSTPKEELPSVTQVLHIRRRQQKELQE---------------------------SFGR-------FGIAM---SQQESE-VEMDDL--------------MEES------TEKYLVCNQIGGGKARDMACAAENESLKLIPWVGIA---SRIDGVPT--EGRAFCFLPLPVRVGLPVHVNGYFELSSNRR 1945
BLAST of mRNA_H-elongata_contig7567.15256.1 vs. uniprot
Match: W2NNW2_PHYPR (UBA domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NNW2_PHYPR) HSP 1 Score: 156 bits (395), Expect = 5.200e-38 Identity = 107/319 (33.54%), Postives = 146/319 (45.77%), Query Frame = 3
Query: 255 FSPFL-FFGCELKNRFDGTLFRFPLRVGDVARDSEISHASYTPDVVVELLNQFKETAHRYLLFMRHVQRIEVYTFKTGDPAPVLWYDVGVTKREPRSGWLTVPYFV------SGHPRRPISKEAFYNKLAQTPDSALPKVDQLVTITFRQEAERVKRVAALGTPAATLLNSVASPATASSSTPTWGRGTEKGDDKGVEVGGGSESESELVEVGDVGAEGGSXXXXXXXXXDESRKATSIVDVFLVCAAIGGGQAKAMACHPEGRAMKFIPWGGVAAHVSRNSQPPSAFEGHAFCFLPLPVTTLLPVHVNGFFELSTNRR 1190
F+PF FGC+L++ + GTLFRFPLR +A SEI Y+ +VEL F+ + LLF+R+V+++EVY D +PVL YD V + + W + F+ SG +E FY +L TP LP V Q++ I RQ+ E GT S ESE+ + + + +LVC IGGG+A+ MAC E ++K IPW G+A+ + EG AFCFLPLPV LPVHVNG+FELS+NRR
Sbjct: 1688 FAPFKGVFGCDLEHHYKGTLFRFPLRDSTLAESSEIKRRGYSHREIVELFKSFQASIIDTLLFLRNVRKVEVYFQPEIDQSPVLLYDAEVPEEDRGESWREIDRFMRNTESTSGTTELSAKRE-FYARLRSTPTQELPSVSQVLHIRRRQQKELQDSFHRFGTVT-------------------------------------SHQESEV---------------------EMDHRMEETTEKYLVCNQIGGGKARDMACAAENESLKLIPWVGIASRIDEEPM-----EGRAFCFLPLPVRVGLPVHVNGYFELSSNRR 1942
BLAST of mRNA_H-elongata_contig7567.15256.1 vs. uniprot
Match: W2RAY0_PHYPN (Uncharacterized protein n=38 Tax=Phytophthora TaxID=4783 RepID=W2RAY0_PHYPN) HSP 1 Score: 156 bits (395), Expect = 5.760e-38 Identity = 107/319 (33.54%), Postives = 146/319 (45.77%), Query Frame = 3
Query: 255 FSPFL-FFGCELKNRFDGTLFRFPLRVGDVARDSEISHASYTPDVVVELLNQFKETAHRYLLFMRHVQRIEVYTFKTGDPAPVLWYDVGVTKREPRSGWLTVPYFV------SGHPRRPISKEAFYNKLAQTPDSALPKVDQLVTITFRQEAERVKRVAALGTPAATLLNSVASPATASSSTPTWGRGTEKGDDKGVEVGGGSESESELVEVGDVGAEGGSXXXXXXXXXDESRKATSIVDVFLVCAAIGGGQAKAMACHPEGRAMKFIPWGGVAAHVSRNSQPPSAFEGHAFCFLPLPVTTLLPVHVNGFFELSTNRR 1190
F+PF FGC+L++ + GTLFRFPLR +A SEI Y+ +VEL F+ + LLF+R+V+++EVY D +PVL YD V + + W + F+ SG +E FY +L TP LP V Q++ I RQ+ E GT S ESE+ + + + +LVC IGGG+A+ MAC E ++K IPW G+A+ + EG AFCFLPLPV LPVHVNG+FELS+NRR
Sbjct: 1718 FAPFKGVFGCDLEHHYKGTLFRFPLRDSTLAESSEIKRRGYSHREIVELFKSFQASIIDTLLFLRNVRKVEVYFQPEIDQSPVLLYDAEVPEEDRGESWREIDRFMRNTESTSGTTELSAKRE-FYARLRSTPTQELPSVSQVLHIRRRQQKELQDSFHRFGTVT-------------------------------------SHQESEV---------------------EMDHRMEETTEKYLVCNQIGGGKARDMACAAENESLKLIPWVGIASRIDEEPM-----EGRAFCFLPLPVRVGLPVHVNGYFELSSNRR 1972
BLAST of mRNA_H-elongata_contig7567.15256.1 vs. uniprot
Match: A0A7S1TYE3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYE3_9STRA) HSP 1 Score: 156 bits (394), Expect = 7.580e-38 Identity = 106/315 (33.65%), Postives = 147/315 (46.67%), Query Frame = 3
Query: 255 FSPFLFFGCELKNRFDGTLFRFPLRVGDVARDSEISHASYTPDVVVELLNQFKETAHRYLLFMRHVQRIEVYTFKTGDPAPVLWYDVGVTKREP--RSGWLTVPYFVSGHPRRPISKEAFYNKLAQTPDSALPKVDQLVTITFRQEAERVKRVAALGTPAATLLNSVASPATASSSTPTWGRGTEKGDDKGVEVGGGSESESELVEVGDVGAEGGSXXXXXXXXXDESRKATSIVDVFLVCAAIGGGQAKAMACHPEGRAMKFIPWGGVAAHVSRNSQPPSA-FEGHAFCFLPLPVTTLLPVHVNGFFELSTNRR 1190
F+PF+ +GC+L+ F GT+FRFPLR A++SEIS SYT D V ELL F+ +LLF+R+V IEV + G + + + P + L Y + +P +P+SKEAFYNKL + LP QL+ I Q+ P +G GT D + +E + + + ++V +GGG + MAC P+ R +KFIPW AA ++ N + G AFCFLPLPV T LPVHVNG+FELS+NRR
Sbjct: 1859 FAPFMQYGCDLQRDFQGTVFRFPLRTALQAKESEISSVSYTKDQVHELLEDFRGQVAEFLLFLRNVVNIEVLVKREGADVAQPLFRAELVRAMPGEKRSTLVSDYILGPNPLKPLSKEAFYNKLRLEKERNLPSSTQLLYI---QQTHY----------------------------PGFGPGTGLPDGR-----------------------------------EEDSEPSKVNYTYIVSQLLGGGAVRDMACDPKHRHLKFIPWAATAARLAVNDAVVAEPITGRAFCFLPLPVVTNLPVHVNGYFELSSNRR 2107 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7567.15256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7567.15256.1 >prot_H-elongata_contig7567.15256.1 ID=prot_H-elongata_contig7567.15256.1|Name=mRNA_H-elongata_contig7567.15256.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp LARLAQASKLDRLSATGRFGLGFNSVYHFTDVPSFVSGEHLVIFDPHTKYback to top mRNA from alignment at H-elongata_contig7567:6840..9810- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7567.15256.1 ID=mRNA_H-elongata_contig7567.15256.1|Name=mRNA_H-elongata_contig7567.15256.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2971bp|location=Sequence derived from alignment at H-elongata_contig7567:6840..9810- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7567:6840..9810- >mRNA_H-elongata_contig7567.15256.1 ID=mRNA_H-elongata_contig7567.15256.1|Name=mRNA_H-elongata_contig7567.15256.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig7567:6840..9810- (Himanthalia elongata Himel1 dioecious)back to top |