mRNA_H-elongata_contig7533.15218.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7533.15218.1
Unique NamemRNA_H-elongata_contig7533.15218.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7533.15218.1 vs. uniprot
Match: A0A6H5KNX0_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX0_9PHAE)

HSP 1 Score: 397 bits (1020), Expect = 2.930e-115
Identity = 315/763 (41.28%), Postives = 362/763 (47.44%), Query Frame = 2 
Query:  446 FQFSPSCLFSPPGAGTLDFPLS--DTPGRGPNR--DLWPQTTPDRHGCE-------------DAQGGGGCSGAGAEQVGSG--------------IGGT-PGSCGKRKSTALFSDKRGPQDHSR-----GLGQAWCLGTPSRPSRESGLVHL--------GVADIPATPDRPTGTDGAQVLPPTPRLLPPTPPPRSSTDAIDAVGGD---DAAGILVGLRSPESLSSFSGGSNGDHTLFNSLEDDGHPGTMDRGWSEDWESRRVVEQNREDGGSDNGDGGNKTWECSGVGNAPHTAPVKRHKRWANSAVSLRDAHCKGSFTIERGTLIRSIPSSSSGYGGVLSGGDNGCGGKKGTSKSGKRNVPSRVKNYERSRATEESFSPPKPVLSPD-----------------------------------PEHLAISRRSASISPMKTQVLRRKDAISRGPS-SARCTRGDRGRRGSTAKVVETDTASAVTPS----------------------------------------PAAAGSSKSGRSKPIPREASRVTSARGARVKMDLPSCNSMELNASAP------SQRRGK--------------------TLAQKXXXXXXXXXXXXTTSVLG--DVAGATEPGQITCNCKKSKCLKLYCECFQRRQYCSDCNCKECLNTPRTEDLRQVAIQGTIERNPLAFESKFEKRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGSNCKCCNCKNYEGAAGGRKRRAAES 2278
            FQFSPSCLFSPPGAGTLDFPL+  DTPG   +   D+W Q TPDR   +             D Q  GG S  G    G                +G T PGSCGKRK  ALF+DKRGPQDH       G GQAWCLGTP RP RESG+VH         GVADIP TPDR TG DG+Q+LPPTP+LLP   P R+S +A DA       DAAGIL+GLRSPESLS F+G  N +H LF+  +          G                                + V +APHTAPVKR++  ++  VSLRDAHC GSFTIERGTLIRS  S SS  GG ++G +    G  G   +GK                                                                 P   A++ R A                S  P  SAR TR DR R+G  A                                                      PAA           I  +A+   SAR  + ++   S NS E   +A       + RRG+                     L  K            T + +G     G  +P  +TCNCKKSKCLKLYCECFQR+QYC  CNC ECLNT RTEDLRQ+AIQGT+ERNP AF SKFE+RAGKRSHNAGCNCKKSACLKKYCECFQAGVACG+NCKC NCKNYEGAAGGRKRRA ES
Sbjct:   68 FQFSPSCLFSPPGAGTLDFPLAGGDTPGPASSSRSDIWQQMTPDRRSNQRGGGKAVRAGSAGDVQASGGVSEDGGVVAGVAXXXXXXXXXXXXXDVGNTTPGSCGKRKGKALFTDKRGPQDHHHSHALGGGGQAWCLGTPMRPVRESGVVHXXXXXXXLGGVADIPTTPDRTTGADGSQILPPTPQLLPXXTPSRASREATDAXXXXXXXDAAGILMGLRSPESLS-FNG--NIEHALFSGFD----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALVSDAPHTAPVKRYR--SSGPVSLRDAHCTGSFTIERGTLIRSSSSCSSSVGGGVTGSNGVRSG--GAGSTGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARSAVANRPAXXXXXXXXTP------STAPRPSARGTRVDRSRKGPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAIK---------IRVKATPPRSARAFKSELQPSSFNSPEPTTTASXXXXXXAGRRGRGAVSVSKLKQGSRVVVPPTPPLVTKPPASTSSGVKAETPAAVGLAGCGGGRDPLLVTCNCKKSKCLKLYCECFQRQQYCKGCNCMECLNTERTEDLRQLAIQGTMERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVES 798
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BLAST of mRNA_H-elongata_contig7533.15218.1 vs. uniprot
Match: D7FRF0_ECTSI (Tesmin-like, animal TCX proteins are associated with development of both male and female reproductiv n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF0_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 3.010e-62
Identity = 110/128 (85.94%), Postives = 117/128 (91.41%), Query Frame = 2 
Query: 1895 GATEPGQITCNCKKSKCLKLYCECFQRRQYCSDCNCKECLNTPRTEDLRQVAIQGTIERNPLAFESKFEKRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGSNCKCCNCKNYEGAAGGRKRRAAES 2278
            G  +P  +TCNCKKSKCLKLYCECFQR+QYC+ CNC ECLNT RTEDLRQ+AIQGTIERNP AF SKFE+RAGKRSHNAGCNCKKSACLKKYCECFQAGVACG+NCKC NCKNYEGAAGGRKRRA ES
Sbjct:  431 GGRDPLSVTCNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVES 558
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BLAST of mRNA_H-elongata_contig7533.15218.1 vs. uniprot
Match: A0A7S3YLM9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLM9_HETAK)

HSP 1 Score: 146 bits (369), Expect = 1.840e-36
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 2 
Query: 1922 CNCKKSKCLKLYCECFQRRQYCSDCNCKECLNTPRTEDLRQVAIQGTIERNPLAFESKFEKRA-GKRSHNAGCNCKKSACLKKYCECFQAGVACGSNCKCCNCKN 2233
            CNCKKSKCLKLYCECF   +YC  CNC +C N P TE  RQ AI+  +ERNP AF SK  + A  K+ H+ GCNCKKS+CLKKYCECFQAGV C + CKC  C N
Sbjct:   46 CNCKKSKCLKLYCECFAAGKYCGACNCVDCQNAPATEAQRQDAIKAILERNPKAFSSKINREALHKQHHSTGCNCKKSSCLKKYCECFQAGVPCSARCKCAACLN 150
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BLAST of mRNA_H-elongata_contig7533.15218.1 vs. uniprot
Match: A0A7S2SM18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SM18_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.140e-36
Identity = 70/132 (53.03%), Postives = 89/132 (67.42%), Query Frame = 2 
Query: 1877 VLGDVAGATEPGQITCNCKKSKCLKLYCECFQRRQYCSDCNCKECLNTPRTEDLRQVAIQGTIERNPLAFESKFEKRA-GKRSHNAGCNCKKSACLKKYCECFQAGVACGSNCKCCNCKNYEGAAGGRKRRA 2269
            VL    G   P +  CNCK SKCLKLYC+CF    YC+ CNCK+C N P  E  RQ A Q T+E+NP AF++K +K   G   H++GC+CKKS CLKKYCECF+A V CG  CKC +C+NY G+   ++R+A
Sbjct:   12 VLTAAPGKPAPRRKACNCKNSKCLKLYCDCFASSIYCNGCNCKDCHNNPEHEAERQDARQSTLEKNPNAFQAKIKKGGQGGSEHSSGCHCKKSKCLKKYCECFEALVFCGEKCKCLDCENYAGSIALQERKA 143
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BLAST of mRNA_H-elongata_contig7533.15218.1 vs. uniprot
Match: A0A7S3FM75_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FM75_9CHLO)

HSP 1 Score: 147 bits (372), Expect = 5.160e-35
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 2 
Query: 1901 TEPGQITCNCKKSKCLKLYCECFQRRQYCSDCNCKECLNTPRTEDLRQVAIQGTIERNPLAFESKFEKRAGKRS------HNAGCNCKKSACLKKYCECFQAGVACGSNCKCCNCKNYEGAA 2248
            T P +  CNCK+S+CLKLYCECF    YC DCNC++C N    E +RQ A++ T+ERNP AF  K +  +   S      HN GCNCK+S CLK+YCECFQA + C  NC+C +CKNYEG+A
Sbjct:  102 TTPKKRKCNCKQSRCLKLYCECFASGIYCQDCNCQDCYNNKEHEQVRQEAVEATLERNPDAFRPKIQSMSPGMSVQDSLKHNKGCNCKRSFCLKRYCECFQANIFCSENCRCKDCKNYEGSA 223
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BLAST of mRNA_H-elongata_contig7533.15218.1 vs. uniprot
Match: A0A7S3AJR0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AJR0_9EUKA)

HSP 1 Score: 141 bits (356), Expect = 1.090e-34
Identity = 64/108 (59.26%), Postives = 75/108 (69.44%), Query Frame = 2 
Query: 1922 CNCKKSKCLKLYCECFQRRQYCSDCNCKECLNTPRTEDLRQVAIQGTIERNPLAFESKFEKRAGK--RSHNAGCNCKKSACLKKYCECFQAGVACGSNCKCCNCKNYE 2239
            CNCK S+CLKLYCECF   QYC  CNC+ C N P  +D R+ AI+ T+ERNP AF  K    AG   R H  GC+C+KS+CLKKYCECFQ G+ C + CKC  CKNYE
Sbjct:    7 CNCKNSRCLKLYCECFASGQYCLACNCQSCHNNPENDDKRKRAIKSTLERNPQAFRPKIN-HAGDTLRRHTRGCHCRKSSCLKKYCECFQGGIKCTAMCKCAGCKNYE 113
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BLAST of mRNA_H-elongata_contig7533.15218.1 vs. uniprot
Match: A0A5J4YAE3_9CHLO (CRC domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YAE3_9CHLO)

HSP 1 Score: 148 bits (373), Expect = 1.620e-34
Identity = 66/115 (57.39%), Postives = 76/115 (66.09%), Query Frame = 2 
Query: 1922 CNCKKSKCLKLYCECFQRRQYCSDCNCKECLNTPRTEDLRQVAIQGTIERNPLAFESKFEKRA-------GKRSHNAGCNCKKSACLKKYCECFQAGVACGSNCKCCNCKNYEGA 2245
            CNCK S+CLKLYCECF   +YC  CNC  C N    E  RQ A++  +ERNP AF  K +  A       G   HN GCNCKKS CLKKYCECFQAG+ CG NCKC +CKN+EG+
Sbjct:   63 CNCKNSRCLKLYCECFASGRYCDGCNCVNCCNNMENESTRQSAVEAILERNPNAFRPKIQAGASEEGTVAGTARHNKGCNCKKSGCLKKYCECFQAGIYCGDNCKCIDCKNFEGS 177
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BLAST of mRNA_H-elongata_contig7533.15218.1 vs. uniprot
Match: A0A087SIS7_AUXPR (Lin-54-like protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SIS7_AUXPR)

HSP 1 Score: 147 bits (370), Expect = 2.300e-34
Identity = 66/115 (57.39%), Postives = 79/115 (68.70%), Query Frame = 2 
Query: 1922 CNCKKSKCLKLYCECFQRRQYCSDCNCKECLNTPRTEDLRQVAIQGTIERNPLAFESKF-----EKRA--GKRSHNAGCNCKKSACLKKYCECFQAGVACGSNCKCCNCKNYEGA 2245
            CNCK S+CLKLYCECF   +YC  CNC  C N  + E +RQ A++  ++RNP AF  K      E+ A  G   HN GCNCKKS CLKKYCECFQAG+ C  NCKCC+CKNY+G+
Sbjct:   40 CNCKNSRCLKLYCECFASGRYCDGCNCVGCCNNQQNEGVRQSAVEAILDRNPNAFRPKIAGDVTEEGASLGAARHNKGCNCKKSGCLKKYCECFQAGIFCSENCKCCDCKNYDGS 154
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BLAST of mRNA_H-elongata_contig7533.15218.1 vs. uniprot
Match: A0A0M0JDD9_9EUKA (Tesmin tso1-like cxc domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JDD9_9EUKA)

HSP 1 Score: 143 bits (361), Expect = 2.360e-34
Identity = 62/106 (58.49%), Postives = 72/106 (67.92%), Query Frame = 2 
Query: 1919 TCNCKKSKCLKLYCECFQRRQYCSDCNCKECLNTPRTEDLRQVAIQGTIERNPLAFESKFEK-RAGKRSHNAGCNCKKSACLKKYCECFQAGVACGSNCKCCNCKN 2233
            TCNC+ S+CLKLYCECF   QYC  CNC+ C N P  ++LR+ AI+ T+ERN  AF  K         +HN GCNCKKS CLKKYCECFQAG+ C   CKC NC N
Sbjct:   36 TCNCRNSRCLKLYCECFASGQYCYGCNCQSCFNNPENDELRKQAIESTLERNQQAFRPKISSTEQASSAHNRGCNCKKSGCLKKYCECFQAGIKCADTCKCVNCLN 141
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BLAST of mRNA_H-elongata_contig7533.15218.1 vs. uniprot
Match: A0A1R2CGC4_9CILI (CRC domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CGC4_9CILI)

HSP 1 Score: 139 bits (349), Expect = 1.390e-33
Identity = 64/112 (57.14%), Postives = 75/112 (66.96%), Query Frame = 2 
Query: 1919 TCNCKKSKCLKLYCECFQRRQYCSDCNCKECLNTPRTEDLRQVAIQGTIERNPLAFESKF-------EKRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGSNCKCCNCKN 2233
            +CNCK SKCLKLYCECF   +YC DCNC  C N P  E+LR   IQ  +ER+PLAF  K        E +A    H  GCNCK++ CLKKYCECF AG+ CG +CKCC+CKN
Sbjct:   17 SCNCKYSKCLKLYCECFAAGEYCLDCNCNNCSNKPEYEELRLKKIQTILERDPLAFRPKIPIDPETLETKAA--PHFKGCNCKRTKCLKKYCECFNAGIPCGEHCKCCHCKN 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7533.15218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNX0_9PHAE2.930e-11541.28CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRF0_ECTSI3.010e-6285.94Tesmin-like, animal TCX proteins are associated wi... [more]
A0A7S3YLM9_HETAK1.840e-3663.81Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2SM18_9STRA2.140e-3653.03Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3FM75_9CHLO5.160e-3554.10Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A7S3AJR0_9EUKA1.090e-3459.26Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A5J4YAE3_9CHLO1.620e-3457.39CRC domain-containing protein n=1 Tax=Trebouxia sp... [more]
A0A087SIS7_AUXPR2.300e-3457.39Lin-54-like protein n=2 Tax=Auxenochlorella protot... [more]
A0A0M0JDD9_9EUKA2.360e-3458.49Tesmin tso1-like cxc domain-containing protein n=1... [more]
A0A1R2CGC4_9CILI1.390e-3357.14CRC domain-containing protein n=1 Tax=Stentor coer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7533contigH-elongata_contig7533:612..6334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.6
Seed ortholog evalue4.9e-60
Seed eggNOG ortholog2880.D7FRF0
KEGG koko:K11600,ko:K21776
KEGG Pathwayko03018,ko04218,map03018,map04218
KEGG ModuleM00390,M00391
EggNOG free text desc.DNA-binding transcription factor activity
EggNOG OGsKOG1171@1,KOG1171@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons5
Model size3803
Cds size2322
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.1098528-UTR-H-elongata_contig7533:611..7761622931159.1098528-UTR-H-elongata_contig7533:611..776Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7533 612..776 +
1691679722.541011-UTR-H-elongata_contig7533:611..7761691679722.541011-UTR-H-elongata_contig7533:611..776Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7533 612..776 +
1622931159.1229382-UTR-H-elongata_contig7533:1181..13561622931159.1229382-UTR-H-elongata_contig7533:1181..1356Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7533 1182..1356 +
1691679722.5541553-UTR-H-elongata_contig7533:1181..13561691679722.5541553-UTR-H-elongata_contig7533:1181..1356Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7533 1182..1356 +
1622931159.1366653-UTR-H-elongata_contig7533:2513..26171622931159.1366653-UTR-H-elongata_contig7533:2513..2617Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7533 2514..2617 +
1691679722.5645962-UTR-H-elongata_contig7533:2513..26171691679722.5645962-UTR-H-elongata_contig7533:2513..2617Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7533 2514..2617 +
1622931159.1552882-UTR-H-elongata_contig7533:2727..33341622931159.1552882-UTR-H-elongata_contig7533:2727..3334Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7533 2728..3334 +
1691679722.5748155-UTR-H-elongata_contig7533:2727..33341691679722.5748155-UTR-H-elongata_contig7533:2727..3334Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7533 2728..3334 +
1622931159.2025404-UTR-H-elongata_contig7533:5904..63341622931159.2025404-UTR-H-elongata_contig7533:5904..6334Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7533 5905..6334 +
1691679722.6048543-UTR-H-elongata_contig7533:5904..63341691679722.6048543-UTR-H-elongata_contig7533:5904..6334Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7533 5905..6334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.1706064-CDS-H-elongata_contig7533:3334..47351622931159.1706064-CDS-H-elongata_contig7533:3334..4735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7533 3335..4735 +
1691679722.5842817-CDS-H-elongata_contig7533:3334..47351691679722.5842817-CDS-H-elongata_contig7533:3334..4735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7533 3335..4735 +
1622931159.1882553-CDS-H-elongata_contig7533:4983..59041622931159.1882553-CDS-H-elongata_contig7533:4983..5904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7533 4984..5904 +
1691679722.5949194-CDS-H-elongata_contig7533:4983..59041691679722.5949194-CDS-H-elongata_contig7533:4983..5904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7533 4984..5904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7533.15218.1prot_H-elongata_contig7533.15218.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7533 3335..5904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7533.15218.1

>prot_H-elongata_contig7533.15218.1 ID=prot_H-elongata_contig7533.15218.1|Name=mRNA_H-elongata_contig7533.15218.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=774bp
MDRGWSEDWESRRVVEQNREDGGSDNGDGGNKTWECSGVGNAPHTAPVKR
HKRWANSAVSLRDAHCKGSFTIERGTLIRSIPSSSSGYGGVLSGGDNGCG
GKKGTSKSGKRNVPSRVKNYERSRATEESFSPPKPVLSPDPEHLAISRRS
ASISPMKTQVLRRKDAISRGPSSARCTRGDRGRRGSTAKVVETDTASAVT
PSPAAAGSSKSGRSKPIPREASRVTSARGARVKMDLPSCNSMELNASAPS
QRRGKTLAQKKKDEDDDDERNSTTSVLGDVAGATEPGQITCNCKKSKCLK
LYCECFQRRQYCSDCNCKECLNTPRTEDLRQVAIQGTIERNPLAFESKFE
KRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGSNCKCCNCKNYEGAAG
GRKRRAAESLPLRTPPKLAARGRAAATAAAVELATTVVAKDHLAVKGEGR
GFVGDEALGISGSATLRVTEAEMSPDHHVQVGGEDEDDEYFVPPSPLVEA
LRAHPPVQDAPPFYRAASTPDETMDDSGSSSSGSGGGDPLDTPAAGAGTA
AAHNNRSDSNRSDISPAASAVEDFAVAKSVLDMGGTPLQVRRSESAHDTK
FELSVSAASPGGVHALSTRLHQQQQQQEGVPRGGGGGGVEDKAVESAIGM
GSLLSRARREAYEIREKSSAQDNAVIATLDKERAGDGNGGFVANSRGKAG
GQACFTPPTPPPTWDMRQGLDGDAAEGADPDSMPRPCGARDDALLLGVAH
GSSSDVVTAVDPEVNSPSVALAI*
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mRNA from alignment at H-elongata_contig7533:612..6334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7533.15218.1 ID=mRNA_H-elongata_contig7533.15218.1|Name=mRNA_H-elongata_contig7533.15218.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5723bp|location=Sequence derived from alignment at H-elongata_contig7533:612..6334+ (Himanthalia elongata Himel1 dioecious)
GTACTCAACACAATCCCCACAGAGCATCGGTTGGTCGCCAAGGGAGAGAA
AACTTAGCCACGGCGTGAAGCCCGCGCCCCCGGAGCAAGCCTGCATGAGC
GTTCGCGTCAGCGAGCGGACACAGCACCAATTTTAGGGCAAAACGTTGTC
GTGTCTTTCATTTAGGTGCGTACTGTCTCCCTGTAGCCCCGAGCGCCCTA
GCACCCTCTATCCCCCACCTCTCTTGATTGATAAGACGTGTGTACTTCTC
TGCAACGAGCAAGCGCCACTGGGCGGGAAAAAATGGATGCTGGTAGGCTC
CAGATGATACATAAGGTGCAGTACTCTGGTCAGTCTGGGCTGGAGGGTAT
CATAGAGGACGTTTGGTGGCGGGCCGAGGTTTGGCGCCATCTCGGGGGCA
CGCACGTTTGGGCCATCGGCCGTTCAAAGAATGCTTGGTCCGACCAAACT
TTTTTTACACCCAACAGGGGACCCTCGCCAAGGCTGCCGGGAGATAACAT
TTGTTTTTTTCTCTGTGTGACTGTCTCTTTTCTGTTACTCTCCTGGCGTG
CGTGCGTGCGTGCTCGTCAGGGTATGCTGGACTTAGACAGCGGCAGCGGA
AGTCCGGCGTCGAGGCAAGAGCAACAGAAGCAGCAGCAAGAGGGGCAATC
GGACGACAGACACGAGGGTTCAGTCCCAGGGACTCCTCCTCGATCTCCTG
CCCGAAATGGGAACTACGCGACACTTTCATGTGGCAAGGAGGAAGGTACG
GCGCAGACTTTCTCGTTCCCATCCTCGGCGTCTGAATGTGGCTTATGTTT
AAGCGTCCTTGACAAGAGTTTCGTCTTCGGATATCTCTCTGGATTTGGAA
TTTAGTAGTCAGGAAGCCTTCCCTTTTTACTAATTTACAGCCCAAATAAC
ACTTCCACCGAAAACACTTTTTCTACTTTTCCCCCCATCGTTTCTAATAT
AACCCTTGAAAATAAGACAAAAAACCCTCCTTGGTTGTCTGTATGATTCT
GCGTCTTACGCCACAGCATTTGTGGGAAAATATACTCCACTCGTTTCAGG
GAACCTTCCCTCTGCGCCATCCTGTTTAAAATTGACCTCAAACCTGAGCT
TCTTGTGTGTACCAGTGGTCACGTACTTATTATGAATGAATGCCCTCGTC
GATAAGCTTGACCGCTGGATTCCTTACTCTTGTGTAGAGCAAAAGTCTGA
AAACTCGACAACCTGGAGAGCGCTCGAATTAAATACCTCTAGAACAGAGT
CCTGCCCATGCAGGGTATTCCCGTGGCTGCTCGCTCAAACTCCCGCCTGA
GCGTAGGTACCAGGTAGCGATGACCAGTCATCAGAGGCAGCAGTACAGTA
GTTGAAATCTTCCGATATGCGATAGTTTGCGAGAGTTCCTTCCAACCCTT
ACCAGCTCATTTCACGCCCGTACCCGTGGACTCTATATTTTGTTTCCAGG
GCACACAGTCTTGATAGCGCGATTTCCCTTGATCCTGTATTCCCATCCAT
AAACGATTCACGTCAAACCAACTCTGGTCCAGACTCAAGCTGTATTACCA
TATATATCGCTCTAGATGTTTCTATAAACAAAAGTTCTACATTAAACATT
GCTCCTAGGAAGGAAGGTTCTACTAGATATAGTCCTGATATGTTTACTTA
CCTACACCCTCACCAAGTGTGACGATTTTGCCCTCAAAGGTAGTAATGTA
CACATTCAAACCTGACGATAGTTGGTCCCCTGGATTGCACCTCTCATGGT
GCTAAGAAGGTGTGGATGTTAGGAGGGCTGAAATGAGTTTAAGGGTTTTT
AAATAATAATGCCTACCCAAGGTGCACTTTGAAGCAAAGAACTGATTCTC
GACCCCTGCCTCCATATTTTGGCATGTTTTTCATACCGTCGCACGCCTGC
AGATGCGGTCATGTCTCTCATGAAGCTCGCCACTCCTGTAAAGTCTCCGG
GGCTTCGCAACACCATGAACGGCGGCTTAGGCGAGATCACGCCTGGGGCA
GGGCACGCCTGGGGAGACGGCGTCGAGATGACTCCGGTTTCTTTTTTTCG
AAGATCACGGCAATCCAGTGACTTTGGGGGGCATTTGCAGTCTCCCTTCC
AGTCCCCGTTAAAAAGCTTCCAGTTCTCCCCCAGCTGCCTTTTCAGCCCC
CCTGGCGCCGGTACTCTGGACTTTCCTCTCAGTGACACACCCGGGCGTGG
ACCGAATCGGGACCTCTGGCCGCAGACAACTCCCGACCGCCACGGCTGTG
AGGACGCCCAAGGAGGGGGGGGGTGCAGCGGAGCTGGAGCAGAGCAGGTT
GGTAGCGGCATCGGTGGTACCCCGGGTAGCTGTGGCAAGAGGAAGAGCAC
GGCTTTGTTTTCGGACAAGCGGGGGCCGCAGGATCACTCCCGCGGCTTAG
GGCAGGCGTGGTGCTTGGGTACTCCAAGCAGACCGTCGCGCGAAAGCGGT
TTGGTGCATCTCGGGGTGGCCGACATCCCGGCCACGCCTGATCGCCCGAC
CGGGACGGACGGCGCGCAGGTACTGCCCCCCACGCCTAGGCTCTTGCCTC
CAACTCCCCCGCCGCGTTCCTCAACGGACGCAATTGACGCCGTGGGTGGC
GATGACGCGGCGGGGATCCTCGTAGGGCTCCGGAGCCCAGAAAGCTTGTC
CTCCTTCAGTGGCGGTAGTAATGGTGATCACACCTTGTTCAACAGCCTGG
AAGATGACGGCCACCCGGGTACGATGGACCGGGGCTGGAGCGAAGATTGG
GAAAGCAGGAGGGTGGTGGAGCAGAATAGAGAAGATGGTGGTAGTGACAA
TGGGGACGGAGGCAACAAGACCTGGGAATGTTCTGGTGTGGGCAACGCAC
CTCACACGGCCCCGGTGAAGCGGCACAAGCGGTGGGCCAACTCAGCCGTT
TCTCTTCGAGACGCCCACTGCAAGGGTTCCTTCACAATTGAACGAGGTAC
TTTGATCCGCTCAATTCCGAGCTCCTCATCCGGTTACGGCGGCGTGTTGT
CGGGAGGCGACAACGGTTGCGGTGGCAAGAAAGGCACTAGCAAAAGTGGA
AAGCGTAACGTTCCTTCACGTGTCAAGAACTACGAGCGCAGCAGAGCCAC
CGAAGAGTCGTTCTCTCCGCCGAAGCCCGTACTCTCTCCCGATCCTGAGC
ACCTGGCCATTTCAAGGCGCTCCGCGTCAATATCGCCGATGAAAACCCAG
GTGCTGCGTCGCAAGGACGCGATCAGCCGCGGTCCATCCTCTGCCCGTTG
TACCCGCGGGGACCGAGGTCGCAGAGGATCGACGGCAAAAGTAGTCGAGA
CTGACACTGCTTCAGCCGTAACGCCTAGCCCGGCAGCGGCCGGTTCATCA
AAGTCGGGTCGATCGAAGCCCATCCCCCGAGAAGCCTCACGCGTTACTTC
GGCTCGTGGCGCCAGGGTTAAGATGGATTTACCCTCGTGCAACAGCATGG
AGCTGAACGCTTCGGCTCCCTCGCAGCGTCGAGGGAAAACCTTGGCGCAG
AAAAAGAAGGATGAAGATGACGATGACGAACGAAACAGTACAACCAGCGT
GCTCGGCGACGTGGCCGGCGCGACGGAACCTGGGCAGATCACTTGCAACT
GCAAAAAGTCCAAGTGTCTAAAGCTTTACTGCGAGTGCTTCCAGCGTCGG
CAGTACTGCTCCGACTGTAACTGCAAGGAGTGTTTGAACACCCCGCGCAC
CGAGGACTTGCGGCAAGTGGCCATCCAGGGCACCATCGAACGCAACCCGC
TCGCATTCGAGAGCAAGTTCGAGAAGCGCGCCGGCAAGCGGTCGCACAAC
GCCGGCTGCAATTGCAAGAAGTCGGCGTGCCTCAAGAAGTACTGCGAGTG
TTTCCAGGCCGGCGTCGCGTGCGGGAGTAACTGCAAGTGCTGCAACTGCA
AAAATTACGAGGGTGCCGCCGGTGGCCGTAAGCGGCGAGCGGCAGAATCG
CTGCCCCTTCGAACTCCTCCGAAACTGGCGGCGCGTGGGCGAGCAGCGGC
TACGGCTGCAGCGGTAGAGTTAGCAACGACGGTGGTAGCCAAAGATCACC
TCGCCGTCAAGGGAGAAGGGAGAGGATTCGTGGGAGACGAGGCGCTCGGA
ATCTCAGGATCTGCTACGCTAAGGGTGAGTGATATAGGCTTCCCTTTCAT
GGTCTACCTTTCATGGCCTACGTTTCGCGGTTTTTTAATGTGATAATATT
TGTGACGCGTAACTAGTATATTTTCCCTGTTGAAAAAAACGTGCAGACGA
CCCTCCTACTCCTCCCAGCGTTCTTATATCTTGCCGTGTTTGCTTATTTA
TCACTTCCTTGCCTGAACCGTCGCCTTGTCACTATATCTTACCCTGGTCG
GTATCAACGCACATGTGCGAAGGTGACGGAAGCAGAAATGAGCCCGGATC
ACCACGTTCAGGTCGGAGGCGAAGACGAAGATGACGAGTACTTCGTGCCT
CCCTCCCCTCTAGTAGAGGCACTGAGAGCCCACCCGCCCGTCCAGGACGC
CCCTCCTTTTTACCGTGCCGCTTCCACGCCGGACGAGACCATGGACGATT
CCGGCAGCTCCAGCAGCGGCAGTGGTGGCGGCGATCCTCTGGACACCCCA
GCCGCGGGCGCAGGCACTGCTGCCGCCCACAACAACCGTTCCGACAGCAA
CCGCTCGGACATATCGCCGGCTGCCTCAGCCGTGGAAGACTTTGCGGTGG
CGAAAAGCGTTCTCGATATGGGCGGTACGCCGTTACAGGTGCGAAGGAGC
GAGTCTGCTCACGACACCAAGTTTGAGCTTTCGGTGTCCGCCGCTTCTCC
CGGGGGTGTGCACGCCCTATCGACCAGGCTCCACCAGCAGCAGCAGCAAC
AAGAGGGTGTTCCGCGCGGCGGTGGTGGTGGCGGCGTTGAAGACAAGGCC
GTCGAAAGCGCCATTGGTATGGGATCTCTTCTGAGCCGCGCTCGAAGGGA
AGCATATGAGATTCGTGAGAAAAGTTCTGCCCAAGACAATGCGGTGATCG
CCACGTTGGACAAGGAGAGGGCTGGGGACGGCAACGGTGGTTTCGTCGCG
AACAGCCGCGGCAAGGCAGGGGGTCAGGCTTGCTTCACGCCGCCCACGCC
GCCGCCCACCTGGGATATGAGGCAGGGGTTGGACGGCGACGCCGCGGAGG
GCGCCGATCCTGACTCCATGCCGAGGCCATGCGGCGCCAGGGATGACGCG
TTGCTGTTAGGCGTTGCGCACGGGAGCAGCAGCGACGTCGTAACCGCGGT
GGACCCTGAGGTCAATTCACCCTCGGTGGCCTTGGCGATCTAGCCATTTC
TGTGATTGTCGGGGTTGCGCCCCCTTCACGGGGGAGTAAGAAAAACCTTG
CACGACGTCGGGAACTCGTGGGGAAAATCCGGGCGCTTAGAAAAAAAACT
GTAGGAGAATAAATTTTCTCGACCCGCAATCGGAAATAAATCTCTGCTCC
CTGGTGTCTGCCGATTTATTTATTTTTATAGTATCAATTGGAAGAATCAG
ATAACATACGCTGAGAAACTATCATATCCTTGCGTCGTAGGAGGCACGCA
GGAAGAATCGGCACGAGGGTGTGTGACGTTCGCCATTTTTGCAGAGGTTG
GATGGGGGGTGGGGGAACGAAGACATCTTCACTCTCGGATGGATCCGAGA
GATTTGTCGCCGCTTTGTGTTTTCATAGGGACATGGCCCTTCTCTTGATA
CTATTTTCCATACTGCATGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig7533:612..6334+

>mRNA_H-elongata_contig7533.15218.1 ID=mRNA_H-elongata_contig7533.15218.1|Name=mRNA_H-elongata_contig7533.15218.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4644bp|location=Sequence derived from alignment at H-elongata_contig7533:612..6334+ (Himanthalia elongata Himel1 dioecious)
ATGGACCGGGGCTGGAGCGAAGATTGGGAAAGCAGGAGGGTGGTGGAGCA
GAATAGAGAAGATGGTGGTAGTGACAATGGGGACGGAGGCAACAAGACCT
GGGAATGTTCTGGTGTGGGCAACGCACCTCACACGGCCCCGGTGAAGCGG
CACAAGCGGTGGGCCAACTCAGCCGTTTCTCTTCGAGACGCCCACTGCAA
GGGTTCCTTCACAATTGAACGAGGTACTTTGATCCGCTCAATTCCGAGCT
CCTCATCCGGTTACGGCGGCGTGTTGTCGGGAGGCGACAACGGTTGCGGT
GGCAAGAAAGGCACTAGCAAAAGTGGAAAGCGTAACGTTCCTTCACGTGT
CAAGAACTACGAGCGCAGCAGAGCCACCGAAGAGTCGTTCTCTCCGCCGA
AGCCCGTACTCTCTCCCGATCCTGAGCACCTGGCCATTTCAAGGCGCTCC
GCGTCAATATCGCCGATGAAAACCCAGGTGCTGCGTCGCAAGGACGCGAT
CAGCCGCGGTCCATCCTCTGCCCGTTGTACCCGCGGGGACCGAGGTCGCA
GAGGATCGACGGCAAAAGTAGTCGAGACTGACACTGCTTCAGCCGTAACG
CCTAGCCCGGCAGCGGCCGGTTCATCAAAGTCGGGTCGATCGAAGCCCAT
CCCCCGAGAAGCCTCACGCGTTACTTCGGCTCGTGGCGCCAGGGTTAAGA
TGGATTTACCCTCGTGCAACAGCATGGAGCTGAACGCTTCGGCTCCCTCG
CAGCGTCGAGGGAAAACCTTGGCGCAGAAAAAGAAGGATGAAGATGACGA
TGACGAACGAAACAGTACAACCAGCGTGCTCGGCGACGTGGCCGGCGCGA
CGGAACCTGGGCAGATCACTTGCAACTGCAAAAAGTCCAAGTGTCTAAAG
CTTTACTGCGAGTGCTTCCAGCGTCGGCAGTACTGCTCCGACTGTAACTG
CAAGGAGTGTTTGAACACCCCGCGCACCGAGGACTTGCGGCAAGTGGCCA
TCCAGGGCACCATCGAACGCAACCCGCTCGCATTCGAGAGCAAGTTCGAG
AAGCGCGCCGGCAAGCGGTCGCACAACGCCGGCTGCAATTGCAAGAAGTC
GGCGTGCCTCAAGAAGTACTGCGAGTGTTTCCAGGCCGGCGTCGCGTGCG
GGAGTAACTGCAAGTGCTGCAACTGCAAAAATTACGAGGGTGCCGCCGGT
GGCCGTAAGCGGCGAGCGGCAGAATCGCTGCCCCTTCGAACTCCTCCGAA
ACTGGCGGCGCGTGGGCGAGCAGCGGCTACGGCTGCAGCGGTAGAGTTAG
CAACGACGGTGGTAGCCAAAGATCACCTCGCCGTCAAGGGAGAAGGGAGA
GGATTCGTGGGAGACGAGGCGCTCGGAATCTCAGGATCTGCTACGCTAAG
GATGGACCGGGGCTGGAGCGAAGATTGGGAAAGCAGGAGGGTGGTGGAGC
AGAATAGAGAAGATGGTGGTAGTGACAATGGGGACGGAGGCAACAAGACC
TGGGAATGTTCTGGTGTGGGCAACGCACCTCACACGGCCCCGGTGAAGCG
GCACAAGCGGTGGGCCAACTCAGCCGTTTCTCTTCGAGACGCCCACTGCA
AGGGTTCCTTCACAATTGAACGAGGTACTTTGATCCGCTCAATTCCGAGC
TCCTCATCCGGTTACGGCGGCGTGTTGTCGGGAGGCGACAACGGTTGCGG
TGGCAAGAAAGGCACTAGCAAAAGTGGAAAGCGTAACGTTCCTTCACGTG
TCAAGAACTACGAGCGCAGCAGAGCCACCGAAGAGTCGTTCTCTCCGCCG
AAGCCCGTACTCTCTCCCGATCCTGAGCACCTGGCCATTTCAAGGCGCTC
CGCGTCAATATCGCCGATGAAAACCCAGGTGCTGCGTCGCAAGGACGCGA
TCAGCCGCGGTCCATCCTCTGCCCGTTGTACCCGCGGGGACCGAGGTCGC
AGAGGATCGACGGCAAAAGTAGTCGAGACTGACACTGCTTCAGCCGTAAC
GCCTAGCCCGGCAGCGGCCGGTTCATCAAAGTCGGGTCGATCGAAGCCCA
TCCCCCGAGAAGCCTCACGCGTTACTTCGGCTCGTGGCGCCAGGGTTAAG
ATGGATTTACCCTCGTGCAACAGCATGGAGCTGAACGCTTCGGCTCCCTC
GCAGCGTCGAGGGAAAACCTTGGCGCAGAAAAAGAAGGATGAAGATGACG
ATGACGAACGAAACAGTACAACCAGCGTGCTCGGCGACGTGGCCGGCGCG
ACGGAACCTGGGCAGATCACTTGCAACTGCAAAAAGTCCAAGTGTCTAAA
GCTTTACTGCGAGTGCTTCCAGCGTCGGCAGTACTGCTCCGACTGTAACT
GCAAGGAGTGTTTGAACACCCCGCGCACCGAGGACTTGCGGCAAGTGGCC
ATCCAGGGCACCATCGAACGCAACCCGCTCGCATTCGAGAGCAAGTTCGA
GAAGCGCGCCGGCAAGCGGTCGCACAACGCCGGCTGCAATTGCAAGAAGT
CGGCGTGCCTCAAGAAGTACTGCGAGTGTTTCCAGGCCGGCGTCGCGTGC
GGGAGTAACTGCAAGTGCTGCAACTGCAAAAATTACGAGGGTGCCGCCGG
TGGCCGTAAGCGGCGAGCGGCAGAATCGCTGCCCCTTCGAACTCCTCCGA
AACTGGCGGCGCGTGGGCGAGCAGCGGCTACGGCTGCAGCGGTAGAGTTA
GCAACGACGGTGGTAGCCAAAGATCACCTCGCCGTCAAGGGAGAAGGGAG
AGGATTCGTGGGAGACGAGGCGCTCGGAATCTCAGGATCTGCTACGCTAA
GGGTGACGGAAGCAGAAATGAGCCCGGATCACCACGTTCAGGTCGGAGGC
GAAGACGAAGATGACGAGTACTTCGTGCCTCCCTCCCCTCTAGTAGAGGC
ACTGAGAGCCCACCCGCCCGTCCAGGACGCCCCTCCTTTTTACCGTGCCG
CTTCCACGCCGGACGAGACCATGGACGATTCCGGCAGCTCCAGCAGCGGC
AGTGGTGGCGGCGATCCTCTGGACACCCCAGCCGCGGGCGCAGGCACTGC
TGCCGCCCACAACAACCGTTCCGACAGCAACCGCTCGGACATATCGCCGG
CTGCCTCAGCCGTGGAAGACTTTGCGGTGGCGAAAAGCGTTCTCGATATG
GGCGGTACGCCGTTACAGGTGCGAAGGAGCGAGTCTGCTCACGACACCAA
GTTTGAGCTTTCGGTGTCCGCCGCTTCTCCCGGGGGTGTGCACGCCCTAT
CGACCAGGCTCCACCAGCAGCAGCAGCAACAAGAGGGTGTTCCGCGCGGC
GGTGGTGGTGGCGGCGTTGAAGACAAGGCCGTCGAAAGCGCCATTGGTAT
GGGATCTCTTCTGAGCCGCGCTCGAAGGGAAGCATATGAGATTCGTGAGA
AAAGTTCTGCCCAAGACAATGCGGTGATCGCCACGTTGGACAAGGAGAGG
GCTGGGGACGGCAACGGTGGTTTCGTCGCGAACAGCCGCGGCAAGGCAGG
GGGTCAGGCTTGCTTCACGCCGCCCACGCCGCCGCCCACCTGGGATATGA
GGCAGGGGTTGGACGGCGACGCCGCGGAGGGCGCCGATCCTGACTCCATG
CCGAGGCCATGCGGCGCCAGGGATGACGCGTTGCTGTTAGGCGTTGCGCA
CGGGAGCAGCAGCGACGTCGTAACCGCGGTGGACCCTGAGGTCAATTCAC
CCTCGGTGGCCTTGGCGATCTAGGTGACGGAAGCAGAAATGAGCCCGGAT
CACCACGTTCAGGTCGGAGGCGAAGACGAAGATGACGAGTACTTCGTGCC
TCCCTCCCCTCTAGTAGAGGCACTGAGAGCCCACCCGCCCGTCCAGGACG
CCCCTCCTTTTTACCGTGCCGCTTCCACGCCGGACGAGACCATGGACGAT
TCCGGCAGCTCCAGCAGCGGCAGTGGTGGCGGCGATCCTCTGGACACCCC
AGCCGCGGGCGCAGGCACTGCTGCCGCCCACAACAACCGTTCCGACAGCA
ACCGCTCGGACATATCGCCGGCTGCCTCAGCCGTGGAAGACTTTGCGGTG
GCGAAAAGCGTTCTCGATATGGGCGGTACGCCGTTACAGGTGCGAAGGAG
CGAGTCTGCTCACGACACCAAGTTTGAGCTTTCGGTGTCCGCCGCTTCTC
CCGGGGGTGTGCACGCCCTATCGACCAGGCTCCACCAGCAGCAGCAGCAA
CAAGAGGGTGTTCCGCGCGGCGGTGGTGGTGGCGGCGTTGAAGACAAGGC
CGTCGAAAGCGCCATTGGTATGGGATCTCTTCTGAGCCGCGCTCGAAGGG
AAGCATATGAGATTCGTGAGAAAAGTTCTGCCCAAGACAATGCGGTGATC
GCCACGTTGGACAAGGAGAGGGCTGGGGACGGCAACGGTGGTTTCGTCGC
GAACAGCCGCGGCAAGGCAGGGGGTCAGGCTTGCTTCACGCCGCCCACGC
CGCCGCCCACCTGGGATATGAGGCAGGGGTTGGACGGCGACGCCGCGGAG
GGCGCCGATCCTGACTCCATGCCGAGGCCATGCGGCGCCAGGGATGACGC
GTTGCTGTTAGGCGTTGCGCACGGGAGCAGCAGCGACGTCGTAACCGCGG
TGGACCCTGAGGTCAATTCACCCTCGGTGGCCTTGGCGATCTAG
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