mRNA_H-elongata_contig75275.15210.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA) HSP 1 Score: 215 bits (548), Expect = 1.170e-59 Identity = 165/485 (34.02%), Postives = 252/485 (51.96%), Query Frame = 1
Query: 19 LGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQ---------VGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAGC*CDET*RGASGEGPVLLFPHQG----------SRGGFILPGMPHNARPERRDI--------QTVAEHFGV--TKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECTTSPI---DVGIK------IHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKT 1359
+G R VF K D+ + +YK RLVA+ + Q I YEE+ SP SIR +L +A G E D + A+L +EE IY+ELPE R+ + V +L +++YG HA +W D+ + GF PAD+ +R G C + AS + V+ G R FIL G+ + ERR + +++ + FG K + P G + L+K D PQT+ D +M+ PY+ ++G+LM+ A TRPD+S A +L++F +NPG H + KA+++L +T+D+ I Y G+ GT L A+ DAD+ D RR VSG +M+ G + W S QK T A +S+E+EY+AL++ VKEC D+G + I+EDN+GA+ +AKN RT+H+DI++H +R+ + G V +EYV + Q A+ +TK + KT
Sbjct: 143 IGCRWVFALKRDEKRQAVRYKARLVAKGYSQRHDIDYEETYSPVAYLNSIRAMLVKCSAEGMEIERCDFDTAFLYGKLEEEIYMELPEGLRELLELAEAQGEDDVVCMLLQSLYGLKHASRVWNDTIDK-HLKSMGFE---------PADADPCVYTRGEGEDECIV-CLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFIL-GIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ--LGTHLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQK-TVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATEIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVGNEVELEYVDTKNQLADFMTKGLSSKT 611
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL) HSP 1 Score: 211 bits (536), Expect = 5.770e-59 Identity = 160/467 (34.26%), Postives = 239/467 (51.18%), Query Frame = 1
Query: 16 VLGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQVGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAG----C*CDET*RGASGEGPVL-LFPHQGSRGGFILPGMPHN--ARPERRDIQTVAEHFGVTKTSIVPSAAGGKA-LSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALA---EMVKECTTSPIDVGIKIH------EDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKTFE 1365
V+ T+ VF +K ++ G I ++K RLVA F Q+ G+ + E+ + + SIR+ L + A G+ LDV+ A+L D++E +Y+E PE + +V L KA+YG AG W K A GF S + D+ + G DE + + + L P + G I+ + + ++T+ E F V + LSK D P+ D EM + PY+ ++G L + A TRPDI+FA L++F +NPGP H AA + L++L T+D I+YGG+ T + + DAD+GT D RR VSG +MM GG I + ++ Q T A +SSE+EY+AL+ + V T D+GI I EDN+GAI +A N RT+H+DI+HH VRD + V+ + YV + Q A+ILTKS+ K FE
Sbjct: 37 VIKTKWVFAKKFNEHGDILRWKARLVALGFLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALI-DLGFKPCGSDTCIYVGRAGGDTTYICLYVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPV-VFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQS-TVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSLGTKRFE 500
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A2P4Y945_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y945_9STRA) HSP 1 Score: 208 bits (530), Expect = 4.310e-58 Identity = 162/475 (34.11%), Postives = 244/475 (51.37%), Query Frame = 1
Query: 19 LGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRD---------SRKQVGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAGC*CD---ET*RGASGEGPVLLFPHQGSRGGFILPGMPHNARPERRDI--------QTVAEHFGV--TKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECTTSPIDVGIK------IHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKT 1359
+G R VF K ++ G + ++K RL A+ + Q GI YEE+ +P SIR L A G+E DVN A+L +EE IY+EL E ++ V LL +++YG A +W + D A + GF + P V DS C D G SG+ + R FI G+ N ER+ + +++ FG K S+ P L+K D PQ+D D +M+ PY+ ++G+LM+ A TRPDI+ A +L+++ +NPG H A K +++L +T+D+ ITY G GT+L+A+ DAD+ D RR VSG +MM G + W S+ QK T A +S+E+EY+AL++ +KE +D+G + I+EDN+GA+ +AKN RT+H+DI++H +R I G V + Y S Q A+ LTK + KT
Sbjct: 44 IGCRWVFALKRNEKGEVIRHKARLAAKGYSQRHGIDYEETYAPVAYLNSIRTNLAKGCAEGFEIVRCDVNTAFLYGKLEEEIYMELSEGLQELLSLADTEGKGDVVCLLLQSLYGLKQASRVWNETID-AHLKTMGFKAADADPC-VYTRGEGDSD------------CIKDIIASVKAGISGQFRIKDL----GRARFIF-GIEINYDMERKALTISQRAYTESIINKFGQENAKPSLTPLDPSVH-LTKADEPQSDDDKAKMKSKPYRSLVGSLMYLACETRPDIAVAVAKLSRYLENPGQRHWDAGIKVVRYLLKTKDVAITYDGR--MGTELTAYSDADWTGNRDDRRSVSGVMLMMCGAPVVWRSKFQK-TVALSSTEAEYMALSDCIKE-----VDIGAEQHGPTVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIRGKIASGEVKLTYEESKSQLADFLTKGLSTKT 490
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A5E3X1D7_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3X1D7_9AGAM) HSP 1 Score: 209 bits (533), Expect = 1.620e-57 Identity = 155/479 (32.36%), Postives = 241/479 (50.31%), Query Frame = 1
Query: 1 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQ--VGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRP---AGC*CDET*RGASGEGPVLLFPHQGSRGGFILPGMPHNARPERRD-------IQTVAEHFGV--TKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECTTSPIDVGIKIHE---------DNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKTFEK 1368
P+ + V+ + FKRK D +GR+ ++K R V + + + G Y +S+SPT S R+V I AAL W+ +DV AYL D++E IY++ P+ + + K+ V LKK +YG G +W K D + GF++IS + ++G+ +H C+E + E + S FI+ R +R I + F +I P A G K LSK DSP+T+ + +E ++PYQ+++G+LM+ A+ TRPDI A L++FN G H RAA + +L T+D + GG G+ +L + D+DY CPD+R+ VSG + G ISW S+ Q T A +S+E+EY+A A KE + HE DN GA + ++ +R +H++++HH R+ G+VH E V S + A+I TKS+ FEK
Sbjct: 143 PRDRKVMSGKFHFKRKRDANGRVCRHKVRRVLRGYEMIYGKDYTKSTSPTARMESERIVCHIAAALDWQLYQIDVKTAYLYGDLDEEIYMDQPKGFEEPGKEDWVWRLKKGLYGMKQGGRIWNKTMD-VHMKDMGFTQISVEHCLYMRTT--NAGTTIAAVHVDDFTVTSSTCEEERQFE--EEMRKHWKITKSDASFIVGISIKRNRADRTIALSQVALIDRILVEFNCKDVNPTITPLAPGTK-LSKRDSPRTEEEKQEAAKLPYQQLVGSLMYLAIATRPDIMHAVSTLSRFNSCFGVAHWRAAIHIVAYLKGTRDYCLILGG--GKPVRLVGYTDSDYANCPDSRKSVSGYCFTLGSGIISWMSKKQ-ATVATSSTEAEYMAAAAATKEAVWLRNLLSEIQHEQARPTPIFIDNNGARILTEDPSFHQRAKHIEVQHHYSRECAQRGIVHFEDVASKDNLADIFTKSLGTAPFEK 612
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU) HSP 1 Score: 213 bits (542), Expect = 2.490e-57 Identity = 154/484 (31.82%), Postives = 238/484 (49.17%), Query Frame = 1
Query: 1 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQVGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAGC*CD-----ET*RGASGEGPVLLFPHQGSRGGFILPGMPHNARPERRD--------IQTVAEHFGVTKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGR-------GTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECT---------TSPIDVGIKIHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKTFE 1365
P G+ +G R V++ K D DGRI +YK RLVAQ F Q G+ Y E+ +P S+R++L I A E DV AYL D++E IY+ P Y + + L+KA+YG AG W ++ GF ++S P SP+ G G+H D +T R SG G+ +L G + ++R IQTV + F + + V + KL DAD EM+ +PYQ ++G+LM+AA+ TRPDIS+A L++++ PG TH AA++ L++L TQD I Y G+ +L + DAD+G PD RR +SG A ++ G I+W S+ Q T A +S E+EY+A+A + T K++ DN+ AI ++K+ R++ +DI+HH +R+ I + + Y + A++ TK++ F+
Sbjct: 53 PAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPK--GLTIVGMHVDDMAALADTPDLMDTLR--SGLARHYKITDLGTP--RLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKMADCNPVTTPLDPNV--KLCKEPEDADLSEMKGVPYQALIGSLMYAALGTRPDISYAVQALSQYSARPGITHWTAAKRVLRYLKGTQDFGILYSGKGETRIRAYYDNFRLEGYSDADWGANPDDRRSISGYAYLVGNGIIAWSSKKQ-TTVALSSMEAEYMAIAYAARHAIWVRAILAELTFTQPRATKLNADNQSAIALSKDTVQHARSKXIDIRHHFIRECIAADTIXLAYCPTDVNSADLFTKALPRDRFQ 527
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA) HSP 1 Score: 208 bits (530), Expect = 2.510e-57 Identity = 162/484 (33.47%), Postives = 248/484 (51.24%), Query Frame = 1
Query: 19 LGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRD---------SRKQVGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAGC*CDET*RGASGEGPVLLFPHQG----------SRGGFILPGMPHNARPERRDI--------QTVAEHFGV--TKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECT--------TSPIDVGIK-IHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVK 1356
+G R VF K ++ G++ +YK RLVA+ + Q GI YEE+ SP S+R +L A G E DV+ A+L ++EE IY+ELPE R+ V +L +++YG A +W + D+ + GF PAD+ +R G D+ AS + V+ G R FI+ G+ + ERR + +++ + FG K + P G + L+K D PQT+ D +M+ PY+ ++G+LM+ A TRPDIS A +L++F +NPG H A K +++L +T+D+ I Y G GT+ A+ DAD+ D RR VSG +M+ G + W S QK T A +S+E+EY+AL++ VKEC VG I+EDN+GA+ +AKN RT+H+DI++H +R+ + V +EYV + Q A +TK + K
Sbjct: 110 IGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDK-HLKSTGFE---------PADADPCVYTRGEGEGECIVCLYVDDMLI-ASRQKAVIASVKAGIAEKFRIKDLGRARFIV-GIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL--LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQK-TVALSSTEAEYMALSDCVKECVWMRRLLKEIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLAYFMTKGLSSK 577
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA) HSP 1 Score: 209 bits (532), Expect = 3.940e-57 Identity = 165/485 (34.02%), Postives = 250/485 (51.55%), Query Frame = 1
Query: 19 LGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQ---------VGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAGC*CDET*RGASGEGPVLLFPHQG----------SRGGFILPGMPHNARPERRDI--------QTVAEHFGV--TKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECTTSPI---DVGIK------IHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKT 1359
+G R VF K D+ G++ +YK RLVA+ + Q GI YEE+ SP SIR +L +A G E DV+ A+L +EE IY+EL E R+ + V +L +++YG A +W + D+ + GF PAD +R G D+ AS + V+ G R FIL G+ + ERR + +++ + FG K + P G + L+K D PQT+ D +M+ PY+ ++G+LM+ + TRPDIS A +L++F +NPG H A K +++L +T+D+ I Y G GT+L A+ DAD+ D RR VSG +M+ G + W S QK T A +S+E+EY+AL++ VKEC D+G + I+EDN+GA+ +AKN T+H+DI++H +RD V +EYV + Q A+ +TK + KT
Sbjct: 175 IGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDK-HLKSMGFE---------PADDDPCVYTRGEGEDECIVCLYVDDMLI-ASRQKAVIASVKAGIAEKFRIKDMGRARFIL-GIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL--LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQK-TVALSSTEAEYMALSDCVKECVWMRRLIKDIGAEQVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGLSSKT 643
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A1M2VCS6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VCS6_TRAPU) HSP 1 Score: 214 bits (544), Expect = 5.210e-57 Identity = 153/490 (31.22%), Postives = 241/490 (49.18%), Query Frame = 1
Query: 1 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQVGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRP--------------------MRVPADSPRDSGSRHRGLHRRPAGC*CDET*RGASGEGPVLLFPHQGSRGGFILPGMPHNARPERRDIQTVAEHFGVTKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYG--GEPG-----RGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECT---------TSPIDVGIKIHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKTF 1362
P G++ +G R V++ K D +GRI +YK RLVAQ F QV G+ Y E+ +P S+R + I A G R DV AYL D+ E IY+ P Y D +V L+KA+YG G W + +R F+ + S M AD+P S GL + E P LL + SR G ++ + + I + + +G+ + V S + L P+ DAD EM+ +PYQ +G LM+AA+ TRPDIS+A L++F+ PGP+H A ++ ++L + D ITYG GEP +L + DAD+G P RR +SG A ++ G I+W S+ Q V A + S+E+EY+A++ + T + K++ DN+ AI ++K+ R++H+DI+HH +R+ I+ + + YV + + A++ TK++ + F
Sbjct: 876 PSGRSPIGCRWVYRLKRDSEGRIIRYKARLVAQGFSQVPGLDYFETFAPVVRMDSLRTLAAIAAERGMGLRQYDVVGAYLNADLNEEIYMRQPPGYDDGSGKVLRLQKALYGLKQGGRKWNQHLNRVLVEELKFTRLDSDACVYVKTSKRGLILVGVHVDDMISAADTPELSAELETGLRKHFKITDLGE---------PQLLLGLEVSRSGRLI------TLRQTQFILSALKRYGMENCAPV-STPMDPNVRLLKEPE-DADLSEMKDVPYQAAIGTLMYAALGTRPDISYAVQALSQFSSRPGPSHWTAVKRIFRYLKGSLDYGITYGRKGEPRVRAFYHNFRLEGYTDADWGANPVDRRSISGYAFLIGSGVIAWSSKKQAVVALS-STEAEYMAISYAARHAIWMRALLAELTFAQEQATKLNADNQSAIALSKDNVHHARSKHIDIRHHFIRECIESDTITLAYVPTDDNVADLFTKALARERF 1347
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A6A3JDE6_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JDE6_9STRA) HSP 1 Score: 211 bits (536), Expect = 1.830e-56 Identity = 163/494 (33.00%), Postives = 246/494 (49.80%), Query Frame = 1
Query: 19 LGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQVG---------LLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAG------C*CDET*RGASGEGPVLLFPHQG----------SRGGFILPGMPHNARPERRDI--------QTVAEHFGVTK-----TSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECT--------TSPIDVGIK-IHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKT 1359
+G R VF K D+ G++ +YK RLVA+ + Q G YEE+ SP SIR +L +A G E DV+ A+L +EE IY+ELPE R+ + +L +++YG A +W + D+ GF + P ++ R G C + AS + V+ G R FIL G+ + ERR + +++ + FG T + PS L+K D PQT+ D +M+ PY+ ++G+LM+ A TRPDIS A +L++F +NPG H A K +++L +T+D+ I Y G GT+L A+ DAD+ D RR VSG +M+ G + W S QK T A +S+E+EY+AL++ VKEC VG I+EDN+GA+ +AKN RT+H+DI++H +R + V +EYV + Q A+ +TK + KT
Sbjct: 422 IGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGTDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLRELLELAEAEGEDDVDCMLLQSLYGLKQASRVWNETIDK-HLNSMGFEPADANPC----------------VYTRGEGDDECIVCLYVDDMLIASRQKAVIASVKAGIAENFRIKDLGRARFIL-GIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPSVQ----LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVSIVYEGL--LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSMFQK-TVALSSTEAEYMALSDCVKECVWIRRLLKEIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIRKKVVSNEVELEYVDTKNQLADFMTKGLSSKT 890
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 209 bits (532), Expect = 7.390e-56 Identity = 165/485 (34.02%), Postives = 250/485 (51.55%), Query Frame = 1
Query: 19 LGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQ---------VGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAGC*CDET*RGASGEGPVLLFPHQG----------SRGGFILPGMPHNARPERRDI--------QTVAEHFGV--TKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECTTSPI---DVGIK------IHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKT 1359
+G R VF K D+ G++ +YK RLVA+ + Q GI YEE+ SP SIR +L +A G E DV+ A+L +E IY+ELPE R+ + V +L +++YG A +W + D+ + GF PAD+ +R G D+ AS + V+ G R FIL G+ + ERR + +++ + FG K + P G + L+K D PQT+ D +M+ PY+ ++G+LM+ A TRPDIS A +L++F +NPG H A K +++L +T+D+ I Y G G +L A+ DAD+ D RR VSG +M+ + W S QK T A +S+E+EY+AL++ VKEC D+G + I+EDN+GA+ +AKN RT+H+DI++H VR+ V +EYV + Q A+ +TK + KT
Sbjct: 441 IGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDK-NLKSMGFE---------PADADPCVYTRGEGEDECIVCLYVDDMLI-ASRQMAVIASVKAGIAEKFRIKDMGRARFIL-GIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL--LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQK-TVALSSTEAEYLALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFVREKAVSNEVKLEYVDTKNQLADFMTKGLSSKT 909 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75275.15210.1 >prot_H-elongata_contig75275.15210.1 ID=prot_H-elongata_contig75275.15210.1|Name=mRNA_H-elongata_contig75275.15210.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp MPHNARPERRDIQTVAEHFGVTKTSIVPSAAGGKALSKLDSPQTDADAEEback to top mRNA from alignment at H-elongata_contig75275:293..1690+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig75275.15210.1 ID=mRNA_H-elongata_contig75275.15210.1|Name=mRNA_H-elongata_contig75275.15210.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1398bp|location=Sequence derived from alignment at H-elongata_contig75275:293..1690+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig75275:293..1690+ >mRNA_H-elongata_contig75275.15210.1 ID=mRNA_H-elongata_contig75275.15210.1|Name=mRNA_H-elongata_contig75275.15210.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig75275:293..1690+ (Himanthalia elongata Himel1 dioecious)back to top |