mRNA_H-elongata_contig75275.15210.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75275.15210.1
Unique NamemRNA_H-elongata_contig75275.15210.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.170e-59
Identity = 165/485 (34.02%), Postives = 252/485 (51.96%), Query Frame = 1
Query:   19 LGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQ---------VGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAGC*CDET*RGASGEGPVLLFPHQG----------SRGGFILPGMPHNARPERRDI--------QTVAEHFGV--TKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECTTSPI---DVGIK------IHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKT 1359
            +G R VF  K D+  +  +YK RLVA+ + Q   I YEE+ SP     SIR +L   +A G E    D + A+L   +EE IY+ELPE  R+  +          V +L +++YG  HA  +W    D+   +  GF          PAD+     +R  G       C   +    AS +  V+     G           R  FIL G+  +   ERR +        +++ + FG    K  + P   G + L+K D PQT+ D  +M+  PY+ ++G+LM+ A  TRPD+S A  +L++F +NPG  H  +  KA+++L +T+D+ I Y G+   GT L A+ DAD+    D RR VSG  +M+ G  + W S  QK T A +S+E+EY+AL++ VKEC        D+G +      I+EDN+GA+ +AKN     RT+H+DI++H +R+ + G  V +EYV +  Q A+ +TK +  KT
Sbjct:  143 IGCRWVFALKRDEKRQAVRYKARLVAKGYSQRHDIDYEETYSPVAYLNSIRAMLVKCSAEGMEIERCDFDTAFLYGKLEEEIYMELPEGLRELLELAEAQGEDDVVCMLLQSLYGLKHASRVWNDTIDK-HLKSMGFE---------PADADPCVYTRGEGEDECIV-CLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFIL-GIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ--LGTHLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQK-TVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATEIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVGNEVELEYVDTKNQLADFMTKGLSSKT 611          
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 211 bits (536), Expect = 5.770e-59
Identity = 160/467 (34.26%), Postives = 239/467 (51.18%), Query Frame = 1
Query:   16 VLGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQVGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAG----C*CDET*RGASGEGPVL-LFPHQGSRGGFILPGMPHN--ARPERRDIQTVAEHFGVTKTSIVPSAAGGKA-LSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALA---EMVKECTTSPIDVGIKIH------EDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKTFE 1365
            V+ T+ VF +K ++ G I ++K RLVA  F Q+ G+ + E+ +   +  SIR+ L +  A G+    LDV+ A+L  D++E +Y+E PE  +    +V  L KA+YG   AG  W K    A     GF    S        +  D+      +     G       DE  +  +    +  L P +   G  I+        +  +   ++T+ E F       V +       LSK D P+ D    EM + PY+ ++G L + A  TRPDI+FA   L++F +NPGP H  AA + L++L  T+D  I+YGG+    T +  + DAD+GT  D RR VSG  +MM GG I + ++ Q  T A +SSE+EY+AL+   + V    T   D+GI I       EDN+GAI +A N     RT+H+DI+HH VRD +   V+ + YV +  Q A+ILTKS+  K FE
Sbjct:   37 VIKTKWVFAKKFNEHGDILRWKARLVALGFLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALI-DLGFKPCGSDTCIYVGRAGGDTTYICLYVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPV-VFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQS-TVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSLGTKRFE 500          
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A2P4Y945_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y945_9STRA)

HSP 1 Score: 208 bits (530), Expect = 4.310e-58
Identity = 162/475 (34.11%), Postives = 244/475 (51.37%), Query Frame = 1
Query:   19 LGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRD---------SRKQVGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAGC*CD---ET*RGASGEGPVLLFPHQGSRGGFILPGMPHNARPERRDI--------QTVAEHFGV--TKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECTTSPIDVGIK------IHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKT 1359
            +G R VF  K ++ G + ++K RL A+ + Q  GI YEE+ +P     SIR  L    A G+E    DVN A+L   +EE IY+EL E  ++             V LL +++YG   A  +W +  D A  +  GF    + P  V      DS             C  D       G SG+  +        R  FI  G+  N   ER+ +        +++   FG    K S+ P       L+K D PQ+D D  +M+  PY+ ++G+LM+ A  TRPDI+ A  +L+++ +NPG  H  A  K +++L +T+D+ ITY G    GT+L+A+ DAD+    D RR VSG  +MM G  + W S+ QK T A +S+E+EY+AL++ +KE     +D+G +      I+EDN+GA+ +AKN     RT+H+DI++H +R  I  G V + Y  S  Q A+ LTK +  KT
Sbjct:   44 IGCRWVFALKRNEKGEVIRHKARLAAKGYSQRHGIDYEETYAPVAYLNSIRTNLAKGCAEGFEIVRCDVNTAFLYGKLEEEIYMELSEGLQELLSLADTEGKGDVVCLLLQSLYGLKQASRVWNETID-AHLKTMGFKAADADPC-VYTRGEGDSD------------CIKDIIASVKAGISGQFRIKDL----GRARFIF-GIEINYDMERKALTISQRAYTESIINKFGQENAKPSLTPLDPSVH-LTKADEPQSDDDKAKMKSKPYRSLVGSLMYLACETRPDIAVAVAKLSRYLENPGQRHWDAGIKVVRYLLKTKDVAITYDGR--MGTELTAYSDADWTGNRDDRRSVSGVMLMMCGAPVVWRSKFQK-TVALSSTEAEYMALSDCIKE-----VDIGAEQHGPTVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIRGKIASGEVKLTYEESKSQLADFLTKGLSTKT 490          
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A5E3X1D7_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3X1D7_9AGAM)

HSP 1 Score: 209 bits (533), Expect = 1.620e-57
Identity = 155/479 (32.36%), Postives = 241/479 (50.31%), Query Frame = 1
Query:    1 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQ--VGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRP---AGC*CDET*RGASGEGPVLLFPHQGSRGGFILPGMPHNARPERRD-------IQTVAEHFGV--TKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECTTSPIDVGIKIHE---------DNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKTFEK 1368
            P+ + V+  +  FKRK D +GR+ ++K R V + +  + G  Y +S+SPT    S R+V  I AAL W+   +DV  AYL  D++E IY++ P+ + +  K+  V  LKK +YG    G +W K  D    +  GF++IS         +  ++G+    +H          C+E  +    E     +    S   FI+       R +R         I  +   F       +I P A G K LSK DSP+T+ + +E  ++PYQ+++G+LM+ A+ TRPDI  A   L++FN   G  H RAA   + +L  T+D  +  GG  G+  +L  + D+DY  CPD+R+ VSG    +  G ISW S+ Q  T A +S+E+EY+A A   KE       +    HE         DN GA  + ++    +R +H++++HH  R+    G+VH E V S +  A+I TKS+    FEK
Sbjct:  143 PRDRKVMSGKFHFKRKRDANGRVCRHKVRRVLRGYEMIYGKDYTKSTSPTARMESERIVCHIAAALDWQLYQIDVKTAYLYGDLDEEIYMDQPKGFEEPGKEDWVWRLKKGLYGMKQGGRIWNKTMD-VHMKDMGFTQISVEHCLYMRTT--NAGTTIAAVHVDDFTVTSSTCEEERQFE--EEMRKHWKITKSDASFIVGISIKRNRADRTIALSQVALIDRILVEFNCKDVNPTITPLAPGTK-LSKRDSPRTEEEKQEAAKLPYQQLVGSLMYLAIATRPDIMHAVSTLSRFNSCFGVAHWRAAIHIVAYLKGTRDYCLILGG--GKPVRLVGYTDSDYANCPDSRKSVSGYCFTLGSGIISWMSKKQ-ATVATSSTEAEYMAAAAATKEAVWLRNLLSEIQHEQARPTPIFIDNNGARILTEDPSFHQRAKHIEVQHHYSRECAQRGIVHFEDVASKDNLADIFTKSLGTAPFEK 612          
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 213 bits (542), Expect = 2.490e-57
Identity = 154/484 (31.82%), Postives = 238/484 (49.17%), Query Frame = 1
Query:    1 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQVGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAGC*CD-----ET*RGASGEGPVLLFPHQGSRGGFILPGMPHNARPERRD--------IQTVAEHFGVTKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGR-------GTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECT---------TSPIDVGIKIHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKTFE 1365
            P G+  +G R V++ K D DGRI +YK RLVAQ F Q  G+ Y E+ +P     S+R++L I A    E    DV  AYL  D++E IY+  P  Y +    +  L+KA+YG   AG  W    ++      GF  ++S P      SP+  G    G+H        D     +T R  SG          G+    +L G   +   ++R         IQTV + F +   + V +        KL     DAD  EM+ +PYQ ++G+LM+AA+ TRPDIS+A   L++++  PG TH  AA++ L++L  TQD  I Y G+            +L  + DAD+G  PD RR +SG A ++  G I+W S+ Q  T A +S E+EY+A+A   +            T       K++ DN+ AI ++K+     R++ +DI+HH +R+ I    + + Y  +    A++ TK++    F+
Sbjct:   53 PAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPK--GLTIVGMHVDDMAALADTPDLMDTLR--SGLARHYKITDLGTP--RLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKMADCNPVTTPLDPNV--KLCKEPEDADLSEMKGVPYQALIGSLMYAALGTRPDISYAVQALSQYSARPGITHWTAAKRVLRYLKGTQDFGILYSGKGETRIRAYYDNFRLEGYSDADWGANPDDRRSISGYAYLVGNGIIAWSSKKQ-TTVALSSMEAEYMAIAYAARHAIWVRAILAELTFTQPRATKLNADNQSAIALSKDTVQHARSKXIDIRHHFIRECIAADTIXLAYCPTDVNSADLFTKALPRDRFQ 527          
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.510e-57
Identity = 162/484 (33.47%), Postives = 248/484 (51.24%), Query Frame = 1
Query:   19 LGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRD---------SRKQVGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAGC*CDET*RGASGEGPVLLFPHQG----------SRGGFILPGMPHNARPERRDI--------QTVAEHFGV--TKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECT--------TSPIDVGIK-IHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVK 1356
            +G R VF  K ++ G++ +YK RLVA+ + Q  GI YEE+ SP     S+R +L    A G E    DV+ A+L  ++EE IY+ELPE  R+             V +L +++YG   A  +W +  D+   +  GF          PAD+     +R  G          D+    AS +  V+     G           R  FI+ G+  +   ERR +        +++ + FG    K  + P   G + L+K D PQT+ D  +M+  PY+ ++G+LM+ A  TRPDIS A  +L++F +NPG  H  A  K +++L +T+D+ I Y G    GT+  A+ DAD+    D RR VSG  +M+ G  + W S  QK T A +S+E+EY+AL++ VKEC              VG   I+EDN+GA+ +AKN     RT+H+DI++H +R+ +    V +EYV +  Q A  +TK +  K
Sbjct:  110 IGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDK-HLKSTGFE---------PADADPCVYTRGEGEGECIVCLYVDDMLI-ASRQKAVIASVKAGIAEKFRIKDLGRARFIV-GIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL--LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQK-TVALSSTEAEYMALSDCVKECVWMRRLLKEIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLAYFMTKGLSSK 577          
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 209 bits (532), Expect = 3.940e-57
Identity = 165/485 (34.02%), Postives = 250/485 (51.55%), Query Frame = 1
Query:   19 LGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQ---------VGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAGC*CDET*RGASGEGPVLLFPHQG----------SRGGFILPGMPHNARPERRDI--------QTVAEHFGV--TKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECTTSPI---DVGIK------IHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKT 1359
            +G R VF  K D+ G++ +YK RLVA+ + Q  GI YEE+ SP     SIR +L   +A G E    DV+ A+L   +EE IY+EL E  R+  +          V +L +++YG   A  +W +  D+   +  GF          PAD      +R  G          D+    AS +  V+     G           R  FIL G+  +   ERR +        +++ + FG    K  + P   G + L+K D PQT+ D  +M+  PY+ ++G+LM+ +  TRPDIS A  +L++F +NPG  H  A  K +++L +T+D+ I Y G    GT+L A+ DAD+    D RR VSG  +M+ G  + W S  QK T A +S+E+EY+AL++ VKEC        D+G +      I+EDN+GA+ +AKN      T+H+DI++H +RD      V +EYV +  Q A+ +TK +  KT
Sbjct:  175 IGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDK-HLKSMGFE---------PADDDPCVYTRGEGEDECIVCLYVDDMLI-ASRQKAVIASVKAGIAEKFRIKDMGRARFIL-GIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL--LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQK-TVALSSTEAEYMALSDCVKECVWMRRLIKDIGAEQVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGLSSKT 643          
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A1M2VCS6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VCS6_TRAPU)

HSP 1 Score: 214 bits (544), Expect = 5.210e-57
Identity = 153/490 (31.22%), Postives = 241/490 (49.18%), Query Frame = 1
Query:    1 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQVGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRP--------------------MRVPADSPRDSGSRHRGLHRRPAGC*CDET*RGASGEGPVLLFPHQGSRGGFILPGMPHNARPERRDIQTVAEHFGVTKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYG--GEPG-----RGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECT---------TSPIDVGIKIHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKTF 1362
            P G++ +G R V++ K D +GRI +YK RLVAQ F QV G+ Y E+ +P     S+R +  I A  G   R  DV  AYL  D+ E IY+  P  Y D   +V  L+KA+YG    G  W +  +R       F+ + S                      M   AD+P  S     GL +        E         P LL   + SR G ++         + + I +  + +G+   + V S      +  L  P+ DAD  EM+ +PYQ  +G LM+AA+ TRPDIS+A   L++F+  PGP+H  A ++  ++L  + D  ITYG  GEP         +L  + DAD+G  P  RR +SG A ++  G I+W S+ Q V A + S+E+EY+A++   +            T   +   K++ DN+ AI ++K+     R++H+DI+HH +R+ I+   + + YV + +  A++ TK++  + F
Sbjct:  876 PSGRSPIGCRWVYRLKRDSEGRIIRYKARLVAQGFSQVPGLDYFETFAPVVRMDSLRTLAAIAAERGMGLRQYDVVGAYLNADLNEEIYMRQPPGYDDGSGKVLRLQKALYGLKQGGRKWNQHLNRVLVEELKFTRLDSDACVYVKTSKRGLILVGVHVDDMISAADTPELSAELETGLRKHFKITDLGE---------PQLLLGLEVSRSGRLI------TLRQTQFILSALKRYGMENCAPV-STPMDPNVRLLKEPE-DADLSEMKDVPYQAAIGTLMYAALGTRPDISYAVQALSQFSSRPGPSHWTAVKRIFRYLKGSLDYGITYGRKGEPRVRAFYHNFRLEGYTDADWGANPVDRRSISGYAFLIGSGVIAWSSKKQAVVALS-STEAEYMAISYAARHAIWMRALLAELTFAQEQATKLNADNQSAIALSKDNVHHARSKHIDIRHHFIRECIESDTITLAYVPTDDNVADLFTKALARERF 1347          
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A6A3JDE6_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JDE6_9STRA)

HSP 1 Score: 211 bits (536), Expect = 1.830e-56
Identity = 163/494 (33.00%), Postives = 246/494 (49.80%), Query Frame = 1
Query:   19 LGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQVG---------LLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAG------C*CDET*RGASGEGPVLLFPHQG----------SRGGFILPGMPHNARPERRDI--------QTVAEHFGVTK-----TSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECT--------TSPIDVGIK-IHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKT 1359
            +G R VF  K D+ G++ +YK RLVA+ + Q  G  YEE+ SP     SIR +L   +A G E    DV+ A+L   +EE IY+ELPE  R+  +            +L +++YG   A  +W +  D+      GF    + P                 ++ R  G      C   +    AS +  V+     G           R  FIL G+  +   ERR +        +++ + FG        T + PS      L+K D PQT+ D  +M+  PY+ ++G+LM+ A  TRPDIS A  +L++F +NPG  H  A  K +++L +T+D+ I Y G    GT+L A+ DAD+    D RR VSG  +M+ G  + W S  QK T A +S+E+EY+AL++ VKEC              VG   I+EDN+GA+ +AKN     RT+H+DI++H +R  +    V +EYV +  Q A+ +TK +  KT
Sbjct:  422 IGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGTDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLRELLELAEAEGEDDVDCMLLQSLYGLKQASRVWNETIDK-HLNSMGFEPADANPC----------------VYTRGEGDDECIVCLYVDDMLIASRQKAVIASVKAGIAENFRIKDLGRARFIL-GIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPSVQ----LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVSIVYEGL--LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSMFQK-TVALSSTEAEYMALSDCVKECVWIRRLLKEIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIRKKVVSNEVELEYVDTKNQLADFMTKGLSSKT 890          
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 209 bits (532), Expect = 7.390e-56
Identity = 165/485 (34.02%), Postives = 250/485 (51.55%), Query Frame = 1
Query:   19 LGTRVVFKRKIDKDGRIEKYKCRLVAQDFRQVKGILYEESSSPTPAQASIRMVLRIIAALGWEAR*LDVNMAYLKTDVEE*IYVELPEAYRDSRKQ---------VGLLKKAMYGFVHAGLLW*KVRDRARARGEGFSEISSRPMRVPADSPRDSGSRHRGLHRRPAGC*CDET*RGASGEGPVLLFPHQG----------SRGGFILPGMPHNARPERRDI--------QTVAEHFGV--TKTSIVPSAAGGKALSKLDSPQTDADAEEMRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKALQHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAGGTISWFSRVQKVTAAAASSESEYVALAEMVKECTTSPI---DVGIK------IHEDNEGAIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTKSVDVKT 1359
            +G R VF  K D+ G++ +YK RLVA+ + Q  GI YEE+ SP     SIR +L   +A G E    DV+ A+L   +E  IY+ELPE  R+  +          V +L +++YG   A  +W +  D+   +  GF          PAD+     +R  G          D+    AS +  V+     G           R  FIL G+  +   ERR +        +++ + FG    K  + P   G + L+K D PQT+ D  +M+  PY+ ++G+LM+ A  TRPDIS A  +L++F +NPG  H  A  K +++L +T+D+ I Y G    G +L A+ DAD+    D RR VSG  +M+    + W S  QK T A +S+E+EY+AL++ VKEC        D+G +      I+EDN+GA+ +AKN     RT+H+DI++H VR+      V +EYV +  Q A+ +TK +  KT
Sbjct:  441 IGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDK-NLKSMGFE---------PADADPCVYTRGEGEDECIVCLYVDDMLI-ASRQMAVIASVKAGIAEKFRIKDMGRARFIL-GIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL--LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQK-TVALSSTEAEYLALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFVREKAVSNEVKLEYVDTKNQLADFMTKGLSSKT 909          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75275.15210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3Q8N8_9STRA1.170e-5934.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A8K1CTN1_PYTOL5.770e-5934.26Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A2P4Y945_9STRA4.310e-5834.11Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A5E3X1D7_9AGAM1.620e-5732.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2V3W8_TRAPU2.490e-5731.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3Q908_9STRA2.510e-5733.47Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3DSS8_9STRA3.940e-5734.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2VCS6_TRAPU5.210e-5731.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3JDE6_9STRA1.830e-5633.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3YGI7_9STRA7.390e-5634.02Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75275contigH-elongata_contig75275:293..1690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue4.4e-37
Seed eggNOG ortholog67593.Physo139221
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1371
Cds size780
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75275.15210.1prot_H-elongata_contig75275.15210.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75275 884..1690 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.083917-UTR-H-elongata_contig75275:292..8831622931158.083917-UTR-H-elongata_contig75275:292..883Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75275 293..883 +
1691679722.1052122-UTR-H-elongata_contig75275:292..8831691679722.1052122-UTR-H-elongata_contig75275:292..883Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75275 293..883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.139188-CDS-H-elongata_contig75275:883..14201622931158.139188-CDS-H-elongata_contig75275:883..1420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75275 884..1420 +
1691679722.118285-CDS-H-elongata_contig75275:883..14201691679722.118285-CDS-H-elongata_contig75275:883..1420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75275 884..1420 +
1622931158.154407-CDS-H-elongata_contig75275:1447..16901622931158.154407-CDS-H-elongata_contig75275:1447..1690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75275 1448..1690 +
1691679722.1375082-CDS-H-elongata_contig75275:1447..16901691679722.1375082-CDS-H-elongata_contig75275:1447..1690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75275 1448..1690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75275.15210.1

>prot_H-elongata_contig75275.15210.1 ID=prot_H-elongata_contig75275.15210.1|Name=mRNA_H-elongata_contig75275.15210.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
MPHNARPERRDIQTVAEHFGVTKTSIVPSAAGGKALSKLDSPQTDADAEE
MRQIPYQEILGALMWAAMMTRPDISFAAPQLAKFNDNPGPTHSRAAQKAL
QHLWRTQDLEITYGGEPGRGTKLSAWIDADYGTCPDTRRLVSGGAVMMAG
GTISWFSRVQKVTAAAASSESEYVALAEMVKECTTSPIDVGIKIHEDNEG
AIKMAKNRFSSRRTRHVDIKHHIVRDGIDGGVVHIEYVRSGEQHANILTK
SVDVKTFEKH
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mRNA from alignment at H-elongata_contig75275:293..1690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75275.15210.1 ID=mRNA_H-elongata_contig75275.15210.1|Name=mRNA_H-elongata_contig75275.15210.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1398bp|location=Sequence derived from alignment at H-elongata_contig75275:293..1690+ (Himanthalia elongata Himel1 dioecious)
CCAAAAGGGAAGACGGTGTTGGGCACGAGAGTTGTTTTCAAGCGCAAAAT CGACAAGGATGGAAGGATCGAGAAGTATAAATGTCGGCTCGTGGCGCAGG ATTTCAGGCAGGTCAAAGGCATACTCTACGAAGAATCCTCCTCTCCGACT CCTGCGCAGGCCAGCATAAGGATGGTACTCAGAATAATCGCGGCTCTCGG CTGGGAGGCGCGGTAGCTGGACGTCAACATGGCCTACCTGAAGACCGATG TGGAAGAGTAGATCTACGTTGAGCTCCCGGAAGCATATCGCGACTCCAGG AAGCAAGTCGGCCTACTAAAGAAGGCAATGTACGGATTCGTCCACGCCGG GTTGCTGTGGTAAAAAGTTCGGGATCGAGCTCGAGCTCGAGGCGAAGGGT TTTCAGAGATCTCAAGCCGACCCATGCGTGTTCCGGCGGATTCTCCACGG GATAGTGGTAGCCGTCATCGTGGTTTACATCGACGACCTGCTGGTTGCTA GTGCGACGAAACGTGACGAGGAGCAAGCGGTGAGGGACCTGTGCTCCTGT TTCCCCATCAAGGATCTAGGGGAGGCTTCATATTACCTGGGATGCCACAT AACGCGAGACCGGAACGTCGGGACATACAAACAGTGGCAGAACATTTTGG CGTGACGAAGACCAGCATCGTCCCGTCTGCGGCAGGAGGGAAAGCCCTTT CGAAATTAGACAGCCCACAAACGGACGCAGATGCTGAAGAAATGCGCCAA ATTCCCTACCAAGAAATCCTTGGGGCCCTGATGTGGGCAGCGATGATGAC CAGGCCCGACATTTCATTCGCTGCGCCCCAACTGGCAAAATTCAACGACA ACCCGGGACCGACGCACTCGAGAGCAGCCCAGAAAGCGCTGCAACATTTA TGGCGCACTCAGGACCTGGAGATCACCTACGGAGGGGAACCGGGGAGGGG GACCAAGTTATCAGCATGGATCGACGCAGACTACGGCACCTGCCCGGACA CGCGTCGCTTAGTGTCGGGAGGGGCGGTGATGATGGCTGGCGGGACCATT AGTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGCGGCGTCGTCCGA ATCGGAATATGTCGCGCTGGCTGAGATGGTAAATTAGTTGCGTTTCCTAC GACAGGTCAAGGAGTGCACAACCTCGCCAATCGACGTCGGCATCAAGATA CACGAGGACAACGAAGGCGCGATCAAGATGGCGAAAAACCGCTTCAGCAG TCGACGAACGAGGCACGTGGACATCAAGCATCACATAGTCCGCGACGGGA TCGATGGGGGGGTGGTTCACATAGAATATGTTCGGTCCGGGGAACAGCAT GCCAACATCCTCACGAAGTCCGTAGACGTCAAGACATTTGAAAAGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig75275:293..1690+

>mRNA_H-elongata_contig75275.15210.1 ID=mRNA_H-elongata_contig75275.15210.1|Name=mRNA_H-elongata_contig75275.15210.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig75275:293..1690+ (Himanthalia elongata Himel1 dioecious)
ATGCCACATAACGCGAGACCGGAACGTCGGGACATACAAACAGTGGCAGA
ACATTTTGGCGTGACGAAGACCAGCATCGTCCCGTCTGCGGCAGGAGGGA
AAGCCCTTTCGAAATTAGACAGCCCACAAACGGACGCAGATGCTGAAGAA
ATGCGCCAAATTCCCTACCAAGAAATCCTTGGGGCCCTGATGTGGGCAGC
GATGATGACCAGGCCCGACATTTCATTCGCTGCGCCCCAACTGGCAAAAT
TCAACGACAACCCGGGACCGACGCACTCGAGAGCAGCCCAGAAAGCGCTG
CAACATTTATGGCGCACTCAGGACCTGGAGATCACCTACGGAGGGGAACC
GGGGAGGGGGACCAAGTTATCAGCATGGATCGACGCAGACTACGGCACCT
GCCCGGACACGCGTCGCTTAGTGTCGGGAGGGGCGGTGATGATGGCTGGC
GGGACCATTAGTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGCGGC
GTCGTCCGAATCGGAATATGTCGCGCTGGCTGAGATGATGCCACATAACG
CGAGACCGGAACGTCGGGACATACAAACAGTGGCAGAACATTTTGGCGTG
ACGAAGACCAGCATCGTCCCGTCTGCGGCAGGAGGGAAAGCCCTTTCGAA
ATTAGACAGCCCACAAACGGACGCAGATGCTGAAGAAATGCGCCAAATTC
CCTACCAAGAAATCCTTGGGGCCCTGATGTGGGCAGCGATGATGACCAGG
CCCGACATTTCATTCGCTGCGCCCCAACTGGCAAAATTCAACGACAACCC
GGGACCGACGCACTCGAGAGCAGCCCAGAAAGCGCTGCAACATTTATGGC
GCACTCAGGACCTGGAGATCACCTACGGAGGGGAACCGGGGAGGGGGACC
AAGTTATCAGCATGGATCGACGCAGACTACGGCACCTGCCCGGACACGCG
TCGCTTAGTGTCGGGAGGGGCGGTGATGATGGCTGGCGGGACCATTAGTT
GGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGCGGCGTCGTCCGAATCG
GAATATGTCGCGCTGGCTGAGATGGTCAAGGAGTGCACAACCTCGCCAAT
CGACGTCGGCATCAAGATACACGAGGACAACGAAGGCGCGATCAAGATGG
CGAAAAACCGCTTCAGCAGTCGACGAACGAGGCACGTGGACATCAAGCAT
CACATAGTCCGCGACGGGATCGATGGGGGGGTGGTTCACATAGAATATGT
TCGGTCCGGGGAACAGCATGCCAACATCCTCACGAAGTCCGTAGACGTCA
AGACATTTGAAAAGCACGTCAAGGAGTGCACAACCTCGCCAATCGACGTC
GGCATCAAGATACACGAGGACAACGAAGGCGCGATCAAGATGGCGAAAAA
CCGCTTCAGCAGTCGACGAACGAGGCACGTGGACATCAAGCATCACATAG
TCCGCGACGGGATCGATGGGGGGGTGGTTCACATAGAATATGTTCGGTCC
GGGGAACAGCATGCCAACATCCTCACGAAGTCCGTAGACGTCAAGACATT
TGAAAAGCAC
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