mRNA_H-elongata_contig74850.15163.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74850.15163.1
Unique NamemRNA_H-elongata_contig74850.15163.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74850.15163.1 vs. uniprot
Match: A0A6H5JAF9_9PHAE (GH10 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAF9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.600e-10
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 3 
Query:  183 EGSLREAAARCSTARNKRVHVGTAIMPDYLNPHFD 287
            EGSLREAAARC  AR K+VHVG AIMPDYLN H+D
Sbjct:   11 EGSLREAAARCGNARKKKVHVGAAIMPDYLNQHYD 45
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74850.15163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAF9_9PHAE5.600e-1080.00GH10 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74850contigH-elongata_contig74850:2577..2863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue3.6e-08
Seed eggNOG ortholog2880.D8LGR5
KEGG koko:K01181
EggNOG free text desc.Glycosyl hydrolase family 10
EggNOG OGs2RWXU@2759,COG3693@1
EC3.2.1.8
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size287
Cds size132
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.0407202-UTR-H-elongata_contig74850:2576..27311622931153.0407202-UTR-H-elongata_contig74850:2576..2731Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74850 2577..2731 +
1691679720.0444727-UTR-H-elongata_contig74850:2576..27311691679720.0444727-UTR-H-elongata_contig74850:2576..2731Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74850 2577..2731 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.0551991-CDS-H-elongata_contig74850:2731..28631622931153.0551991-CDS-H-elongata_contig74850:2731..2863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74850 2732..2863 +
1691679720.057894-CDS-H-elongata_contig74850:2731..28631691679720.057894-CDS-H-elongata_contig74850:2731..2863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74850 2732..2863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74850.15163.1prot_H-elongata_contig74850.15163.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74850 2732..2863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74850.15163.1

>prot_H-elongata_contig74850.15163.1 ID=prot_H-elongata_contig74850.15163.1|Name=mRNA_H-elongata_contig74850.15163.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MRDVLQEPHEGSLREAAARCSTARNKRVHVGTAIMPDYLNPHFD
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mRNA from alignment at H-elongata_contig74850:2577..2863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74850.15163.1 ID=mRNA_H-elongata_contig74850.15163.1|Name=mRNA_H-elongata_contig74850.15163.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=287bp|location=Sequence derived from alignment at H-elongata_contig74850:2577..2863+ (Himanthalia elongata Himel1 dioecious)
CTCACAGAGCTTTCTATTGAAAACTGGGCAGCAAATAGTGTAAACAGGAT
CGACCACTAAACGGCAGCTTGAAGCTAGCTTTGATCGGCAGAAGAGTTGC
TGAGAGTAACAAATAACAATAGCGACAATCCTGAAAGCTGAAAGGTGGCC
GCAGGATGAGAGATGTACTGCAGGAACCCCATGAGGGGAGCCTACGAGAG
GCGGCAGCACGGTGCAGCACGGCAAGGAATAAACGAGTACACGTAGGGAC
CGCCATCATGCCGGACTACTTGAACCCCCACTTCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig74850:2577..2863+

>mRNA_H-elongata_contig74850.15163.1 ID=mRNA_H-elongata_contig74850.15163.1|Name=mRNA_H-elongata_contig74850.15163.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig74850:2577..2863+ (Himanthalia elongata Himel1 dioecious)
ATGAGAGATGTACTGCAGGAACCCCATGAGGGGAGCCTACGAGAGGCGGC
AGCACGGTGCAGCACGGCAAGGAATAAACGAGTACACGTAGGGACCGCCA
TCATGCCGGACTACTTGAACCCCCACTTCGACATGAGAGATGTACTGCAG
GAACCCCATGAGGGGAGCCTACGAGAGGCGGCAGCACGGTGCAGCACGGC
AAGGAATAAACGAGTACACGTAGGGACCGCCATCATGCCGGACTACTTGA
ACCCCCACTTCGAC
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