mRNA_H-elongata_contig74379.15125.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 173 bits (439), Expect = 3.950e-45 Identity = 117/298 (39.26%), Postives = 159/298 (53.36%), Query Frame = 1
Query: 4 ARLKELVVATWNVRTTSEKGTNGPGH-AEDLLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEG 870
AR +L T+NVRT + G N GH ++ A +CD I +QETR + I GY + SG K G+ GVG+A++ ++ ++G IS RL+KV + TF+VGYAPTETA K FW + + I EV + DHL++ M NARTG R +G D +++G Y RD +N NG RLL AA+++LS +NT F PK G + KE HR LD+IL+RQ +RRLVRN ++ SDH LV ++R R APNRR R G
Sbjct: 85 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSG 376
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 167 bits (423), Expect = 6.080e-44 Identity = 111/294 (37.76%), Postives = 159/294 (54.08%), Query Frame = 1
Query: 4 ARLKELVVATWNVRTTSEKGTNGPGH-AEDLLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLR 858
AR +L T+NVRT + G N GH ++ + CD I +QETR + +I GY + SG K G+ GVG+A++ ++ ++G + IS RL+KV + TF+VGYAPTET K FW + + I EV + DHL++ M NARTG R +G D +++G Y RD +N NG RLL A++++LS NT F PK GG F K ++ LD+I +RQ +RR VRN+++ SDH+LV ++RL R APNRR+R
Sbjct: 170 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFIFMRQADRRFVRNVSVKRVDFKDSDHKLVLTTVRLPPRVAPNRRVR 457
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 164 bits (414), Expect = 1.640e-43 Identity = 110/302 (36.42%), Postives = 159/302 (52.65%), Query Frame = 1
Query: 4 ARLKELVVATWNVRTTSEKGTNGPGH-AEDLLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEGHQGV 882
AR +L T+NVRT + G N GH ++ + CD I +QETR + +I GY + SG K G+ GVG+ ++ ++ ++G + I RL+KV + F+VGYAPTET K FW + + I EV + DHL++ M NARTG R +G D +++G Y RD +N NG RLL A++++LS NT F PK GG F K ++ LD+IL+RQ +RR VRN+++ SDH LV ++RL R APNRR+R G + +
Sbjct: 76 AREGDLSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSGSRRI 371
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 166 bits (419), Expect = 1.450e-42 Identity = 112/294 (38.10%), Postives = 159/294 (54.08%), Query Frame = 1
Query: 4 ARLKELVVATWNVRTTSEKGTNGPGH-AEDLLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLR 858
AR +L T++VRT G N GH ++ ++ CD I +QETR + + +I GY + SG K G GVG+A++ ++ +G + IS RL+KV + TF+VGYAPTET K FW + + I EV + DHL++ M NARTG R +G D +++G Y RD +N NG RLL A++++LS NT F PK GG F K ++ LD+IL+RQ +RR VRN+++ SDH LV ++RLR R APNRR+R
Sbjct: 150 AREGDLSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQCSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLRPRVAPNRRVR 437
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 165 bits (417), Expect = 3.240e-42 Identity = 111/298 (37.25%), Postives = 159/298 (53.36%), Query Frame = 1
Query: 4 ARLKELVVATWNVRTTSEKGTNGPGH-AEDLLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEG 870
AR +L T+NV T + G N GH ++ + CD I +QETR + + +I GY + SG K G+ GVG+A++ ++ ++G + IS RL+KV + TF+V YAPTET K FW + + I EV + DHL++ M NARTG R +G D +++G Y RD +N NG RLL A++++LS NT F PK GG F K ++ LD+IL+RQ +RR VRN+++ SDH LV ++RL R APNRR+R G
Sbjct: 652 AREGDLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSG 943
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.220e-40 Identity = 102/268 (38.06%), Postives = 144/268 (53.73%), Query Frame = 1
Query: 91 LLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEG 870
++ + CD I +QETR + + +I GY + SG K G+ GVG+A++ ++ ++G + IS RL+KV + TF+VGYAPTET K FW + + I EV + DHL++ M NARTG R GG D +VLG Y RD +N NG RL A++++ S NT F PK GG F K ++ LD+IL+RQ +RR VRN+++ SDH LV ++RL R APNRR+R G
Sbjct: 3 VMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR-RGGCC-DAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSG 264
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 158 bits (399), Expect = 2.420e-40 Identity = 108/294 (36.73%), Postives = 155/294 (52.72%), Query Frame = 1
Query: 4 ARLKELVVATWNVRTTSEKGTNGPGH-AEDLLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIH--PKMKSDHRLVSASIRLRERNAPNRRLR 858
AR +L T+NVRT + G N GH ++ + CD I +QETR + +I GY + SG K G+ GVG+A++ ++ ++G + IS RL+KV + TF+VGYAPTET K FW + + I EV + DHL++ M NARTG R +G D +++G Y RD +N NG RLL A++++LS NT PK GG F K ++ LD IL+RQ +RR VRN+++ DH LV ++R R AP+RR+R
Sbjct: 81 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTPK-GGVQHTFQSSN-KGKEKYRLDLILMRQTDRRFVRNVSVKCVDFKDPDHNLVLTTVRRPPRVAPHRRVR 368
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 159 bits (402), Expect = 3.300e-40 Identity = 105/268 (39.18%), Postives = 144/268 (53.73%), Query Frame = 1
Query: 91 LLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEG 870
++ A +CD I +QETR + I GY + SG K G+ GVG+A++ ++ ++G IS RL+KV + TF+VGYAPTETA K FW + + I EV + DHL++ M NARTG R +G D +++G Y RD +N NG RLL AA+++LS +NT F PK G + KE HR LD+IL+RQ +RRLVRN ++ SDH LV ++R R APNRR R G
Sbjct: 3 VMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSG 264
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 157 bits (396), Expect = 1.760e-39 Identity = 101/268 (37.69%), Postives = 146/268 (54.48%), Query Frame = 1
Query: 91 LLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEG 870
++ + CD I +QETR + + +I GY + SG K G+ GVG+A++ ++ ++G + IS RL+KV + TF+VGYAPTET K FW + + I EV + DHL++ M NARTG R +G D +++G Y RD +N NG RLL A++++LS NT F PK GG F K ++ LD+IL+RQ +RR VRN+++ SDH LV ++RL R APNRR+R G
Sbjct: 3 VMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSG 264
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE) HSP 1 Score: 152 bits (385), Expect = 3.120e-39 Identity = 100/269 (37.17%), Postives = 147/269 (54.65%), Query Frame = 1
Query: 91 LLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGL-KESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEG 870
++ + CD +QETR + + +I GY + SG K G+ GVG+A++ ++ ++G + IS RL+KV + TF++GYAPTET K FW + + I EV + DHL++ M NARTG R +G D +++G Y RD +N NG RLL A++++LS NT F PK GG+ F KE +R LD+IL+RQ +RR VR++++ SDH LV ++RL R APNRR+R G
Sbjct: 3 VMQICSATGCDVTGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGAQHTFQSSNTGKEKYR--LDFILMRQTDRRFVRDVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSG 264 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74379.15125.1 >prot_H-elongata_contig74379.15125.1 ID=prot_H-elongata_contig74379.15125.1|Name=mRNA_H-elongata_contig74379.15125.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp AARLKELVVATWNVRTTSEKGTNGPGHAEDLLMFAAKYECDFIAIQETRCback to top mRNA from alignment at H-elongata_contig74379:204..1085- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74379.15125.1 ID=mRNA_H-elongata_contig74379.15125.1|Name=mRNA_H-elongata_contig74379.15125.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=882bp|location=Sequence derived from alignment at H-elongata_contig74379:204..1085- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74379:204..1085- >mRNA_H-elongata_contig74379.15125.1 ID=mRNA_H-elongata_contig74379.15125.1|Name=mRNA_H-elongata_contig74379.15125.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig74379:204..1085- (Himanthalia elongata Himel1 dioecious)back to top |