mRNA_H-elongata_contig74379.15125.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74379.15125.1
Unique NamemRNA_H-elongata_contig74379.15125.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 3.950e-45
Identity = 117/298 (39.26%), Postives = 159/298 (53.36%), Query Frame = 1
Query:    4 ARLKELVVATWNVRTTSEKGTNGPGH-AEDLLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEG 870
            AR  +L   T+NVRT +  G N  GH    ++   A  +CD I +QETR   +  I     GY +  SG       K G+ GVG+A++ ++  ++G        IS RL+KV +        TF+VGYAPTETA          K  FW  + + I EV + DHL++ M  NARTG R +G    D +++G Y RD +N NG RLL  AA+++LS +NT F  PK G      +    KE HR  LD+IL+RQ +RRLVRN ++       SDH LV  ++R   R APNRR R   G
Sbjct:   85 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSG 376          
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 6.080e-44
Identity = 111/294 (37.76%), Postives = 159/294 (54.08%), Query Frame = 1
Query:    4 ARLKELVVATWNVRTTSEKGTNGPGH-AEDLLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLR 858
            AR  +L   T+NVRT +  G N  GH    ++   +   CD I +QETR   + +I     GY +  SG       K G+ GVG+A++ ++  ++G +      IS RL+KV +        TF+VGYAPTET           K  FW  + + I EV + DHL++ M  NARTG R +G    D +++G Y RD +N NG RLL  A++++LS  NT F  PK GG    F     K   ++ LD+I +RQ +RR VRN+++       SDH+LV  ++RL  R APNRR+R
Sbjct:  170 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFIFMRQADRRFVRNVSVKRVDFKDSDHKLVLTTVRLPPRVAPNRRVR 457          
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.640e-43
Identity = 110/302 (36.42%), Postives = 159/302 (52.65%), Query Frame = 1
Query:    4 ARLKELVVATWNVRTTSEKGTNGPGH-AEDLLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEGHQGV 882
            AR  +L   T+NVRT +  G N  GH    ++   +   CD I +QETR   + +I     GY +  SG       K G+ GVG+ ++ ++  ++G +      I  RL+KV +         F+VGYAPTET           K  FW  + + I EV + DHL++ M  NARTG R +G    D +++G Y RD +N NG RLL  A++++LS  NT F  PK GG    F     K   ++ LD+IL+RQ +RR VRN+++       SDH LV  ++RL  R APNRR+R   G + +
Sbjct:   76 AREGDLSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSGSRRI 371          
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.450e-42
Identity = 112/294 (38.10%), Postives = 159/294 (54.08%), Query Frame = 1
Query:    4 ARLKELVVATWNVRTTSEKGTNGPGH-AEDLLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLR 858
            AR  +L   T++VRT    G N  GH    ++  ++   CD I +QETR + + +I     GY +  SG       K G  GVG+A++ ++   +G +      IS RL+KV +        TF+VGYAPTET           K  FW  + + I EV + DHL++ M  NARTG R +G    D +++G Y RD +N NG RLL  A++++LS  NT F  PK GG    F     K   ++ LD+IL+RQ +RR VRN+++       SDH LV  ++RLR R APNRR+R
Sbjct:  150 AREGDLSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQCSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLRPRVAPNRRVR 437          
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 3.240e-42
Identity = 111/298 (37.25%), Postives = 159/298 (53.36%), Query Frame = 1
Query:    4 ARLKELVVATWNVRTTSEKGTNGPGH-AEDLLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEG 870
            AR  +L   T+NV T +  G N  GH    ++   +   CD I +QETR + + +I     GY +  SG       K G+ GVG+A++ ++  ++G +      IS RL+KV +        TF+V YAPTET           K  FW  + + I EV + DHL++ M  NARTG R +G    D +++G Y RD +N NG RLL  A++++LS  NT F  PK GG    F     K   ++ LD+IL+RQ +RR VRN+++       SDH LV  ++RL  R APNRR+R   G
Sbjct:  652 AREGDLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSG 943          
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.220e-40
Identity = 102/268 (38.06%), Postives = 144/268 (53.73%), Query Frame = 1
Query:   91 LLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEG 870
            ++   +   CD I +QETR + + +I     GY +  SG       K G+ GVG+A++ ++  ++G +      IS RL+KV +        TF+VGYAPTET           K  FW  + + I EV + DHL++ M  NARTG R  GG   D +VLG Y RD +N NG RL   A++++ S  NT F  PK GG    F     K   ++ LD+IL+RQ +RR VRN+++       SDH LV  ++RL  R APNRR+R   G
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR-RGGCC-DAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSG 264          
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.420e-40
Identity = 108/294 (36.73%), Postives = 155/294 (52.72%), Query Frame = 1
Query:    4 ARLKELVVATWNVRTTSEKGTNGPGH-AEDLLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIH--PKMKSDHRLVSASIRLRERNAPNRRLR 858
            AR  +L   T+NVRT +  G N  GH    ++   +   CD I +QETR   + +I     GY +  SG       K G+ GVG+A++ ++  ++G +      IS RL+KV +        TF+VGYAPTET           K  FW  + + I EV + DHL++ M  NARTG R +G    D +++G Y RD +N NG RLL  A++++LS  NT    PK GG    F     K   ++ LD IL+RQ +RR VRN+++        DH LV  ++R   R AP+RR+R
Sbjct:   81 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTPK-GGVQHTFQSSN-KGKEKYRLDLILMRQTDRRFVRNVSVKCVDFKDPDHNLVLTTVRRPPRVAPHRRVR 368          
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 3.300e-40
Identity = 105/268 (39.18%), Postives = 144/268 (53.73%), Query Frame = 1
Query:   91 LLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEG 870
            ++   A  +CD I +QETR   +  I     GY +  SG       K G+ GVG+A++ ++  ++G        IS RL+KV +        TF+VGYAPTETA          K  FW  + + I EV + DHL++ M  NARTG R +G    D +++G Y RD +N NG RLL  AA+++LS +NT F  PK G      +    KE HR  LD+IL+RQ +RRLVRN ++       SDH LV  ++R   R APNRR R   G
Sbjct:    3 VMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSG 264          
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.760e-39
Identity = 101/268 (37.69%), Postives = 146/268 (54.48%), Query Frame = 1
Query:   91 LLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEG 870
            ++   +   CD I +QETR + + +I     GY +  SG       K G+ GVG+A++ ++  ++G +      IS RL+KV +        TF+VGYAPTET           K  FW  + + I EV + DHL++ M  NARTG R +G    D +++G Y RD +N NG RLL  A++++LS  NT F  PK GG    F     K   ++ LD+IL+RQ +RR VRN+++       SDH LV  ++RL  R APNRR+R   G
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSG 264          
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 3.120e-39
Identity = 100/269 (37.17%), Postives = 147/269 (54.65%), Query Frame = 1
Query:   91 LLMFAAKYECDFIAIQETRCDERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDIVPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCH------KSKFWKEICSTIAEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLLACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGL-KESHRWCLDYILVRQHNRRLVRNITIHPK--MKSDHRLVSASIRLRERNAPNRRLRPEEG 870
            ++   +   CD   +QETR + + +I     GY +  SG       K G+ GVG+A++ ++  ++G +      IS RL+KV +        TF++GYAPTET           K  FW  + + I EV + DHL++ M  NARTG R +G    D +++G Y RD +N NG RLL  A++++LS  NT F  PK GG+   F      KE +R  LD+IL+RQ +RR VR++++       SDH LV  ++RL  R APNRR+R   G
Sbjct:    3 VMQICSATGCDVTGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGAQHTFQSSNTGKEKYR--LDFILMRQTDRRFVRDVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSG 264          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74379.15125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQH5_9PHAE3.950e-4539.26Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K3Q1_9PHAE6.080e-4437.76Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KV75_9PHAE1.640e-4336.42Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JVN7_9PHAE1.450e-4238.10Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H7_9PHAE3.240e-4237.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBZ6_9PHAE1.220e-4038.06Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JMB4_9PHAE2.420e-4036.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KC90_9PHAE3.300e-4039.18Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L7A7_9PHAE1.760e-3937.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSV0_9PHAE3.120e-3937.17Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74379contigH-elongata_contig74379:204..1085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score79.0
Seed ortholog evalue4.2e-12
Seed eggNOG ortholog8479.XP_005287781.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BHR3@33208,3CUIP@33213,48DAM@7711,49HS5@7742,4CMNI@8459,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size882
Cds size882
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.3842762-CDS-H-elongata_contig74379:203..10851622931148.3842762-CDS-H-elongata_contig74379:203..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74379 204..1085 -
1691679718.3463545-CDS-H-elongata_contig74379:203..10851691679718.3463545-CDS-H-elongata_contig74379:203..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74379 204..1085 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74379.15125.1prot_H-elongata_contig74379.15125.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74379 204..1085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74379.15125.1

>prot_H-elongata_contig74379.15125.1 ID=prot_H-elongata_contig74379.15125.1|Name=mRNA_H-elongata_contig74379.15125.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp
AARLKELVVATWNVRTTSEKGTNGPGHAEDLLMFAAKYECDFIAIQETRC
DERTTIQAPAAGYGVHCSGHCDDDGGKPGILGVGLAVRVSIARALGPDDI
VPGHISARLLKVMVIFKHEAVTTFIVGYAPTETAAKCHKSKFWKEICSTI
AEVPASDHLILTMHTNARTGGRGEGGRLGDVRVLGPYDRDTLNENGSRLL
ACAAEHKLSTVNTLFSKPKRGGSSDAFTYEGLKESHRWCLDYILVRQHNR
RLVRNITIHPKMKSDHRLVSASIRLRERNAPNRRLRPEEGHQGV
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mRNA from alignment at H-elongata_contig74379:204..1085-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74379.15125.1 ID=mRNA_H-elongata_contig74379.15125.1|Name=mRNA_H-elongata_contig74379.15125.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=882bp|location=Sequence derived from alignment at H-elongata_contig74379:204..1085- (Himanthalia elongata Himel1 dioecious)
GCAGCACGTTTGAAGGAGCTCGTGGTTGCCACATGGAACGTCCGCACCAC GTCCGAGAAAGGGACCAACGGCCCGGGGCACGCGGAGGATCTTTTGATGT TCGCTGCGAAGTACGAGTGCGACTTCATCGCCATACAGGAGACTCGCTGC GATGAAAGGACAACCATCCAAGCACCAGCCGCTGGTTATGGCGTGCACTG CAGCGGTCATTGCGATGATGATGGAGGTAAGCCCGGGATACTCGGAGTTG GTCTGGCTGTCAGGGTGTCTATCGCTCGTGCACTCGGCCCAGATGACATT GTGCCGGGACATATCAGTGCGCGGTTGTTAAAGGTTATGGTGATTTTCAA ACACGAAGCTGTCACAACCTTCATCGTGGGATACGCTCCGACTGAAACAG CAGCCAAATGTCACAAGTCTAAGTTCTGGAAGGAAATTTGCAGCACTATC GCTGAGGTACCTGCCAGCGACCATCTGATTTTGACGATGCATACTAACGC CCGTACGGGAGGAAGGGGAGAGGGAGGTCGACTAGGGGATGTGCGGGTTT TGGGACCATACGACAGAGACACTCTCAATGAGAACGGGTCGCGACTTCTA GCATGTGCTGCCGAGCACAAGCTGTCGACTGTCAACACCCTTTTCAGTAA ACCGAAGCGTGGGGGAAGCTCGGATGCGTTCACATACGAGGGGCTGAAGG AATCCCACCGCTGGTGCCTTGACTACATCCTGGTACGCCAGCATAACCGC AGGCTCGTCCGAAATATCACTATCCACCCGAAAATGAAATCAGACCACCG CTTGGTTTCAGCTTCCATCCGCCTTCGAGAAAGGAACGCACCCAACCGCC GCCTGAGACCGGAAGAAGGGCACCAGGGGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig74379:204..1085-

>mRNA_H-elongata_contig74379.15125.1 ID=mRNA_H-elongata_contig74379.15125.1|Name=mRNA_H-elongata_contig74379.15125.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig74379:204..1085- (Himanthalia elongata Himel1 dioecious)
GCAGCACGTTTGAAGGAGCTCGTGGTTGCCACATGGAACGTCCGCACCAC
GTCCGAGAAAGGGACCAACGGCCCGGGGCACGCGGAGGATCTTTTGATGT
TCGCTGCGAAGTACGAGTGCGACTTCATCGCCATACAGGAGACTCGCTGC
GATGAAAGGACAACCATCCAAGCACCAGCCGCTGGTTATGGCGTGCACTG
CAGCGGTCATTGCGATGATGATGGAGGTAAGCCCGGGATACTCGGAGTTG
GTCTGGCTGTCAGGGTGTCTATCGCTCGTGCACTCGGCCCAGATGACATT
GTGCCGGGACATATCAGTGCGCGGTTGTTAAAGGTTATGGTGATTTTCAA
ACACGAAGCTGTCACAACCTTCATCGTGGGATACGCTCCGACTGAAACAG
CAGCCAAATGTCACAAGTCTAAGTTCTGGAAGGAAATTTGCAGCACTATC
GCTGAGGTACCTGCCAGCGACCATCTGATTTTGACGATGCATACTAACGC
CCGTACGGGAGGAAGGGGAGAGGGAGGTCGACTAGGGGATGTGCGGGTTT
TGGGACCATACGACAGAGACACTCTCAATGAGAACGGGTCGCGACTTCTA
GCATGTGCTGCCGAGCACAAGCTGTCGACTGTCAACACCCTTTTCAGTAA
ACCGAAGCGTGGGGGAAGCTCGGATGCGTTCACATACGAGGGGCTGAAGG
AATCCCACCGCTGGTGCCTTGACTACATCCTGGTACGCCAGCATAACCGC
AGGCTCGTCCGAAATATCACTATCCACCCGAAAATGAAATCAGACCACCG
CTTGGTTTCAGCTTCCATCCGCCTTCGAGAAAGGAACGCACCCAACCGCC
GCCTGAGACCGGAAGAAGGGCACCAGGGGGTAGCAGCACGTTTGAAGGAG
CTCGTGGTTGCCACATGGAACGTCCGCACCACGTCCGAGAAAGGGACCAA
CGGCCCGGGGCACGCGGAGGATCTTTTGATGTTCGCTGCGAAGTACGAGT
GCGACTTCATCGCCATACAGGAGACTCGCTGCGATGAAAGGACAACCATC
CAAGCACCAGCCGCTGGTTATGGCGTGCACTGCAGCGGTCATTGCGATGA
TGATGGAGGTAAGCCCGGGATACTCGGAGTTGGTCTGGCTGTCAGGGTGT
CTATCGCTCGTGCACTCGGCCCAGATGACATTGTGCCGGGACATATCAGT
GCGCGGTTGTTAAAGGTTATGGTGATTTTCAAACACGAAGCTGTCACAAC
CTTCATCGTGGGATACGCTCCGACTGAAACAGCAGCCAAATGTCACAAGT
CTAAGTTCTGGAAGGAAATTTGCAGCACTATCGCTGAGGTACCTGCCAGC
GACCATCTGATTTTGACGATGCATACTAACGCCCGTACGGGAGGAAGGGG
AGAGGGAGGTCGACTAGGGGATGTGCGGGTTTTGGGACCATACGACAGAG
ACACTCTCAATGAGAACGGGTCGCGACTTCTAGCATGTGCTGCCGAGCAC
AAGCTGTCGACTGTCAACACCCTTTTCAGTAAACCGAAGCGTGGGGGAAG
CTCGGATGCGTTCACATACGAGGGGCTGAAGGAATCCCACCGCTGGTGCC
TTGACTACATCCTGGTACGCCAGCATAACCGCAGGCTCGTCCGAAATATC
ACTATCCACCCGAAAATGAAATCAGACCACCGCTTGGTTTCAGCTTCCAT
CCGCCTTCGAGAAAGGAACGCACCCAACCGCCGCCTGAGACCGGAAGAAG
GGCACCAGGGGGTA
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