mRNA_H-elongata_contig73643.15052.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73643.15052.1
Unique NamemRNA_H-elongata_contig73643.15052.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73643.15052.1 vs. uniprot
Match: D7FSF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF0_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 3.200e-25
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 1
Query:    1 ADKLDDIISEAEQVATDLYGESMSPQDRQQDRIWKDTTVSVFDLENMEEDGKLRGEEMPWAN 186
            A +LDD+ISEAEQVAT+LYGES SPQD Q DR WKD TVSVFDLENMEEDGKLRGE+MPWAN
Sbjct:  258 AQQLDDMISEAEQVATELYGESQSPQDMQ-DRAWKDATVSVFDLENMEEDGKLRGEDMPWAN 318          
BLAST of mRNA_H-elongata_contig73643.15052.1 vs. uniprot
Match: A0A836CLR4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.580e-17
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    1 ADKLDDIISEAEQVATDLYGESMSPQDRQQDRIWKDTTVSVFDLENMEEDGKLRGEEMPWAN 186
            ADK+D IIS AE+VAT LYGESMSP+D QQDR W++   SV+DLE +E D  LRGEEMPWAN
Sbjct:  257 ADKVDVIISTAEKVATALYGESMSPKD-QQDRAWREHGASVWDLEKLENDAMLRGEEMPWAN 317          
BLAST of mRNA_H-elongata_contig73643.15052.1 vs. uniprot
Match: A0A7S2HQV3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQV3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.470e-12
Identity = 29/59 (49.15%), Postives = 50/59 (84.75%), Query Frame = 1
Query:    4 DKLDDIISEAEQVATDLYGESMSPQDRQQDRIWKDTTVSVFDLENMEEDGKLRGEEMPW 180
            +++ + ++EAEQV+T +YGESM+ ++ QQDR+WKD T+S++DLE +E+  +++GE+MPW
Sbjct:  457 ERVTECVAEAEQVSTSIYGESMTAEE-QQDRMWKDGTISIWDLETLEQQAEIQGEQMPW 514          
BLAST of mRNA_H-elongata_contig73643.15052.1 vs. uniprot
Match: A0A7R9ZKR3_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKR3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.270e-12
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 ADKLDDIISEAEQVATDLYGESMSPQDRQQDRIWKDTTVSVFDLENMEEDGKLRGEEMPWAN 186
            A ++  I SEAE VAT +YG+ MS ++ QQDR+W+D T S+FDLE ME + + RGE  PW N
Sbjct:  141 ASRIKQIASEAEVVATRIYGQGMSLRE-QQDRMWEDETTSIFDLEKMELEAEARGENAPWTN 201          
BLAST of mRNA_H-elongata_contig73643.15052.1 vs. uniprot
Match: A0A7S2S3D9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S3D9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.310e-11
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    7 KLDDIISEAEQVATDLYGESMSPQDRQQDRIWKDTTVSVFDLENMEEDGKLRGEEMPWAN 186
            ++  I +EAE VAT +YG+ MSP++ QQDR+WK+ T S+FDLE ME D + RG+  PW N
Sbjct:  475 RIKQIAAEAEVVATRIYGKGMSPKE-QQDRMWKEQTTSIFDLETMEIDAEKRGDAAPWTN 533          
BLAST of mRNA_H-elongata_contig73643.15052.1 vs. uniprot
Match: A0A6U1M7L3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1M7L3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.400e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 ADKLDDIISEAEQVATDLYGESMSPQDRQQDRIWKDTTVSVFDLENMEEDGKLRGEEMPWAN 186
            AD+L  I  EAE VAT +YGESM+ ++ QQD++W + T+SVFDLE +E   + +GE MPW N
Sbjct:  341 ADRLRKITDEAEGVATSIYGESMTARE-QQDKMWNEGTISVFDLEKIENAAEAQGEAMPWKN 401          
BLAST of mRNA_H-elongata_contig73643.15052.1 vs. uniprot
Match: A0A7S2VDW2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VDW2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 8.540e-11
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 ADKLDDIISEAEQVATDLYGESMSPQDRQQDRIWKDTTVSVFDLENMEEDGKLRGEEMPWAN 186
            A ++  + SEAE VAT +YG+ MS Q+ QQDR WK+ T S+FDLE ME + +  GE+ PWAN
Sbjct:  437 ASRIKKLASEAEVVATRIYGKPMSLQE-QQDRAWKEQTTSIFDLERMEIEAERMGEQAPWAN 497          
BLAST of mRNA_H-elongata_contig73643.15052.1 vs. uniprot
Match: A0A448Z1Y6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1Y6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.170e-10
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 ADKLDDIISEAEQVATDLYGESMSPQDRQQDRIWKDTTVSVFDLENMEEDGKLRGEEMPWAN 186
            A ++  I SEAE VAT +YG+ MS +D QQDR+WK+ T S+F+LE ME + +  GE+ PWA+
Sbjct:  444 ASRIKQIASEAEVVATRIYGQGMSLRD-QQDRMWKEQTTSIFELEQMELEAEANGEKAPWAS 504          
BLAST of mRNA_H-elongata_contig73643.15052.1 vs. uniprot
Match: B8BV68_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BV68_THAPS)

HSP 1 Score: 63.9 bits (154), Expect = 2.180e-10
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   19 IISEAEQVATDLYGESMSPQDRQQDRIWKDTTVSVFDLENMEEDGKLRGEEMPWAN 186
            I SEAE VAT +YG+ M+ ++ QQDR+WK+ T S+FDLE +E + + RGE  PWAN
Sbjct:  466 IASEAEVVATRIYGKGMTARE-QQDRMWKEQTTSIFDLETLEIEAERRGETAPWAN 520          
BLAST of mRNA_H-elongata_contig73643.15052.1 vs. uniprot
Match: A0A7R9UEH5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEH5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.050e-10
Identity = 30/60 (50.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    7 KLDDIISEAEQVATDLYGESMSPQDRQQDRIWKDTTVSVFDLENMEEDGKLRGEEMPWAN 186
            ++D I  EAE+VAT  +G+SM+P++ QQDR+ KD +VSV+DLE  E+  + +GE+ PW N
Sbjct:   78 RIDAICDEAERVATSFFGQSMTPRE-QQDRMMKDGSVSVWDLEKYEDAAESQGEKQPWQN 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73643.15052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FSF0_ECTSI3.200e-2583.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLR4_9STRA2.580e-1769.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2HQV3_9STRA1.470e-1249.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9ZKR3_9STRA8.270e-1253.23Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A7S2S3D9_9STRA1.310e-1153.33Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6U1M7L3_9STRA2.400e-1153.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2VDW2_9STRA8.540e-1153.23Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A448Z1Y6_9STRA1.170e-1051.61Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B8BV68_THAPS2.180e-1055.36Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7R9UEH5_9STRA4.050e-1050.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73643contigH-elongata_contig73643:2229..2643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size189
Cds size132
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73643.15052.1prot_H-elongata_contig73643.15052.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73643 2229..2588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.8187573-CDS-H-elongata_contig73643:2228..23281622931139.8187573-CDS-H-elongata_contig73643:2228..2328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73643 2229..2328 -
1691679714.9548135-CDS-H-elongata_contig73643:2228..23281691679714.9548135-CDS-H-elongata_contig73643:2228..2328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73643 2229..2328 -
1622931139.8374202-CDS-H-elongata_contig73643:2556..25881622931139.8374202-CDS-H-elongata_contig73643:2556..2588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73643 2557..2588 -
1691679714.9674191-CDS-H-elongata_contig73643:2556..25881691679714.9674191-CDS-H-elongata_contig73643:2556..2588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73643 2557..2588 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.858739-UTR-H-elongata_contig73643:2588..26431622931139.858739-UTR-H-elongata_contig73643:2588..2643Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73643 2589..2643 -
1691679714.9763284-UTR-H-elongata_contig73643:2588..26431691679714.9763284-UTR-H-elongata_contig73643:2588..2643Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73643 2589..2643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73643.15052.1

>prot_H-elongata_contig73643.15052.1 ID=prot_H-elongata_contig73643.15052.1|Name=mRNA_H-elongata_contig73643.15052.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MASRCPLKIVSRIAFGRTRQCRCLTLRIWRKMESSEERRCRGLT
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mRNA from alignment at H-elongata_contig73643:2229..2643-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73643.15052.1 ID=mRNA_H-elongata_contig73643.15052.1|Name=mRNA_H-elongata_contig73643.15052.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=415bp|location=Sequence derived from alignment at H-elongata_contig73643:2229..2643- (Himanthalia elongata Himel1 dioecious)
GCGGACAAGCTTGACGATATAATCTCGGAGGCGGAACAGGTCGCCACGGA CCTGTATGGCGAGTCGATGTCCCCTCAAGATCGTCAGGTAGGGTTAATCG ATGCCTAGGGCTACAATCACTTAAATTGTTTTTCTTCTTTCGGAGCCGTT CCGTTCCACAGTGGTTTAGTAATAATAAAAAACACCATAAGTTATCTTAA CTTCACTTAGGCGGATCGCATCACAAGGATGACAGGTGGAACGCGGCCAA CCTGCTCCGTCTGGAAACCCACGAAGCTTAAGTGCACCCCCCTCCGGTCG CCGCTCGTTTTGGAGCAGGATCGCATTTGGAAGGACACGACAGTGTCGGT GTTTGACCTTGAGAATATGGAGGAAGATGGAAAGCTCCGAGGAGAGGAGA TGCCGTGGGCTAACG
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Coding sequence (CDS) from alignment at H-elongata_contig73643:2229..2643-

>mRNA_H-elongata_contig73643.15052.1 ID=mRNA_H-elongata_contig73643.15052.1|Name=mRNA_H-elongata_contig73643.15052.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig73643:2229..2643- (Himanthalia elongata Himel1 dioecious)
ATGGCGAGTCGATGTCCCCTCAAGATCGTCAGATGGCGAGTCGATGTCCC
CTCAAGATCGTCAGCAGGATCGCATTTGGAAGGACACGACAGTGTCGGTG
TTTGACCTTGAGAATATGGAGGAAGATGGAAAGCTCCGAGGAGAGGAGAT
GCCGTGGGCTAACGCAGGATCGCATTTGGAAGGACACGACAGTGTCGGTG
TTTGACCTTGAGAATATGGAGGAAGATGGAAAGCTCCGAGGAGAGGAGAT
GCCGTGGGCTAACG
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