mRNA_H-elongata_contig73585.15049.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73585.15049.1
Unique NamemRNA_H-elongata_contig73585.15049.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73585.15049.1 vs. uniprot
Match: D8LCH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH7_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.060e-28
Identity = 70/100 (70.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 KVSRFREGTVRDPALARAECARVFKKAREEWMKAEKGRLQRASNKKAGAMKQAAAHALEPQLAELVKSNRAEARARTEDLDTALLALQTTLERESTEKVR 300
            +V RFREG  RD  +ARAE AR  KKARE WM AEKGRLQR S KKAGA+KQAA  ALEPQL ELVK+NRAEARAR ++L   LL LQ +LERES+EKV+
Sbjct:   92 QVGRFREGRDRDCVVARAESARELKKAREAWMAAEKGRLQRLSEKKAGAIKQAAVRALEPQLTELVKANRAEARARADELGEVLLGLQASLERESSEKVQ 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73585.15049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCH7_ECTSI1.060e-2870.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73585contigH-elongata_contig73585:273..909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.5576463-CDS-H-elongata_contig73585:272..4701622931139.5576463-CDS-H-elongata_contig73585:272..470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73585 273..470 -
1691679714.8355544-CDS-H-elongata_contig73585:272..4701691679714.8355544-CDS-H-elongata_contig73585:272..470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73585 273..470 -
1622931139.5713224-CDS-H-elongata_contig73585:801..9091622931139.5713224-CDS-H-elongata_contig73585:801..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73585 802..909 -
1691679714.844813-CDS-H-elongata_contig73585:801..9091691679714.844813-CDS-H-elongata_contig73585:801..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73585 802..909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73585.15049.1prot_H-elongata_contig73585.15049.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73585 273..909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73585.15049.1

>prot_H-elongata_contig73585.15049.1 ID=prot_H-elongata_contig73585.15049.1|Name=mRNA_H-elongata_contig73585.15049.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
KVSRFREGTVRDPALARAECARVFKKAREEWMKAEKGRLQRASNKKAGAM
KQAAAHALEPQLAELVKSNRAEARARTEDLDTALLALQTTLERESTEKVR
SQ
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mRNA from alignment at H-elongata_contig73585:273..909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73585.15049.1 ID=mRNA_H-elongata_contig73585.15049.1|Name=mRNA_H-elongata_contig73585.15049.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=637bp|location=Sequence derived from alignment at H-elongata_contig73585:273..909- (Himanthalia elongata Himel1 dioecious)
AAGGTCTCCCGATTTCGCGAGGGGACGGTCAGGGACCCTGCCCTCGCCAG
AGCCGAGTGCGCGCGAGTTTTTAAGAAAGCGCGAGAGGAGTGGATGAAAG
CAGAAAAAGTGAGGAGGGGACCGGGGAACGGGAATGGGGATGGAGAGGCG
GTACGTCATGGACGTGTCGTACAAATATGTTACATTTCGATTGTTGAGAA
ATCCTCAAGAACAACAACGTTCGCTAGTGCAAGTGTGATTCTGCAGGGAA
GAGTCTTCGAAGGCGACGCAAAGCAGTCCACTGATGCTCAGAGAATATTT
CACCGGCTTTGTCGCGCTATACCCGCGGAACCAAGAGACCTCTCGGTCAG
CTCTCACACCAAAACCGTGAGCACGCACACTCGCGCGCACGCACGCGCTC
AAAAATACTCTGTGATCTCACGTACACCTTGTGATGCAGGGACGCTTGCA
GAGGGCGTCAAACAAGAAGGCGGGAGCTATGAAACAAGCGGCGGCCCACG
CGCTGGAGCCGCAGCTTGCCGAACTCGTCAAATCCAACAGAGCGGAAGCA
AGAGCGCGCACGGAAGATCTGGACACGGCGCTGCTGGCCCTTCAGACAAC
GCTAGAGCGAGAAAGCACTGAAAAGGTTCGTAGCCAA
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Coding sequence (CDS) from alignment at H-elongata_contig73585:273..909-

>mRNA_H-elongata_contig73585.15049.1 ID=mRNA_H-elongata_contig73585.15049.1|Name=mRNA_H-elongata_contig73585.15049.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig73585:273..909- (Himanthalia elongata Himel1 dioecious)
AAGGTCTCCCGATTTCGCGAGGGGACGGTCAGGGACCCTGCCCTCGCCAG
AGCCGAGTGCGCGCGAGTTTTTAAGAAAGCGCGAGAGGAGTGGATGAAAG
CAGAAAAAAAGGTCTCCCGATTTCGCGAGGGGACGGTCAGGGACCCTGCC
CTCGCCAGAGCCGAGTGCGCGCGAGTTTTTAAGAAAGCGCGAGAGGAGTG
GATGAAAGCAGAAAAAGGACGCTTGCAGAGGGCGTCAAACAAGAAGGCGG
GAGCTATGAAACAAGCGGCGGCCCACGCGCTGGAGCCGCAGCTTGCCGAA
CTCGTCAAATCCAACAGAGCGGAAGCAAGAGCGCGCACGGAAGATCTGGA
CACGGCGCTGCTGGCCCTTCAGACAACGCTAGAGCGAGAAAGCACTGAAA
AGGTTCGTAGCCAAGGACGCTTGCAGAGGGCGTCAAACAAGAAGGCGGGA
GCTATGAAACAAGCGGCGGCCCACGCGCTGGAGCCGCAGCTTGCCGAACT
CGTCAAATCCAACAGAGCGGAAGCAAGAGCGCGCACGGAAGATCTGGACA
CGGCGCTGCTGGCCCTTCAGACAACGCTAGAGCGAGAAAGCACTGAAAAG
GTTCGTAGCCAA
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