mRNA_H-elongata_contig73548.15045.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73548.15045.1
Unique NamemRNA_H-elongata_contig73548.15045.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73548.15045.1 vs. uniprot
Match: D8LDN4_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN4_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 6.670e-37
Identity = 67/109 (61.47%), Postives = 79/109 (72.48%), Query Frame = 1
Query:    1 IAFFHSLGLVHADIKPENVVLYPRSGGNGCGGMRSSDLTNA---SQPPFDLRIIDLGNSVFAADAVPGVTAGTPSYLSPEANKGMPWGLPVDVWAAGCIIDEIVTGGRM 318
            IAF HS+GLVHADIKP+NV LYP                     +Q PFDLR+IDLGN+VFA+D VPGVTAGTPSYLSPEA+ G+ WG PVDVWA GC++ EI+TGGR+
Sbjct:  256 IAFLHSVGLVHADIKPDNVALYPXXXXXXXXXXXXXXXXXXXXXAQAPFDLRLIDLGNAVFASDTVPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVLHEILTGGRV 364          
BLAST of mRNA_H-elongata_contig73548.15045.1 vs. uniprot
Match: A0A059LAU2_9CHLO (Protein kinase domain-containing protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LAU2_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 1.330e-17
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 1
Query:    1 IAFFHSLGLVHADIKPENVVLY---PRSGGNGCGGMRSSDLTNASQPPFDLRIIDLGNSVFAADAVPGVTAGTPSYLSPEANKGMPWGLPVDVWAAGCIIDEIVTGGRMKN 324
            + + H LGLVH D+KPENV+L    P     G GG R + L  AS    ++ +ID G++ +  D     T  T  Y SPE   G+ W LP D+W+ GCI+ E++TG  + N
Sbjct:    7 VRYVHGLGLVHTDLKPENVLLADCAPLQERGGGGGKRLASLLPASN---EVTLIDFGSAAWV-DGHHSATVSTRHYRSPEVVMGLGWSLPTDIWSVGCILVELLTGDVLFN 113          
BLAST of mRNA_H-elongata_contig73548.15045.1 vs. uniprot
Match: A0A0P1L1A4_9SACH (LAQU0S07e03928g1_1 n=2 Tax=Lachancea TaxID=300275 RepID=A0A0P1L1A4_9SACH)

HSP 1 Score: 73.9 bits (180), Expect = 4.020e-13
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 1
Query:    1 IAFFHSLGLVHADIKPENVVLYPRS-----------------GGNGCGGMRSSDLTNASQPPFDLRIIDLGNSVFAADAVPGVTAGTPSYLSPEANKGMPWGLPVDVWAAGCIIDEIVTG 309
            + F H LG++H D+KPENV+L   S                   + CGG R   LTN      ++++ID G++VF  +  P + + T  Y +PE   G+ W  P DVW+ GC++ E+VTG
Sbjct:  401 VCFLHDLGIIHTDLKPENVLLCDESYVGKPLSPQTYSSLSPRRKSACGGERKF-LTNP-----EVKLIDFGSAVFHNEFHPAIIS-TRHYRAPEIVLGLGWSFPCDVWSIGCVLVELVTG 513          
BLAST of mRNA_H-elongata_contig73548.15045.1 vs. uniprot
Match: LKH1_SCHPO (Dual specificity protein kinase lkh1 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=LKH1_SCHPO)

HSP 1 Score: 72.4 bits (176), Expect = 1.400e-12
Identity = 43/106 (40.57%), Postives = 57/106 (53.77%), Query Frame = 1
Query:    1 IAFFHSLGLVHADIKPENVVLYPRSGGNGCGGMRSSDLTNASQPPF---DLRIIDLGNSVFAADAVPGVTAGTPSYLSPEANKGMPWGLPVDVWAAGCIIDEIVTG 309
            +AF HSLGLVH D+KPENV+L      N    +R     N SQ      ++R+ID G++ F  D        T  Y +PE   G+ W  P DVW+ GCI+ E+ TG
Sbjct:  476 VAFLHSLGLVHTDLKPENVLLVS----NASRTIRLP-YRNYSQKVLNSCEIRLIDFGSATFE-DEYHSSVVSTRHYRAPEIILGLGWSYPCDVWSIGCILVELFTG 575          
BLAST of mRNA_H-elongata_contig73548.15045.1 vs. uniprot
Match: S9W8I5_SCHCR (CMGC/CLK protein kinase Lkh1 n=1 Tax=Schizosaccharomyces cryophilus (strain OY26 / ATCC MYA-4695 / CBS 11777 / NBRC 106824 / NRRL Y48691) TaxID=653667 RepID=S9W8I5_SCHCR)

HSP 1 Score: 72.0 bits (175), Expect = 1.910e-12
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 IAFFHSLGLVHADIKPENVVLYPRSGGNGCGGMR--SSDLTNASQPPFDLRIIDLGNSVFAADAVPGVTAGTPSYLSPEANKGMPWGLPVDVWAAGCIIDEIVTG 309
            +AF H +GLVH D+KPENV+L   +  N     R  S  L N ++    +R+ID G++ F  D        T  Y +PE   G+ W  P D+W+ GCII E+ TG
Sbjct:  505 VAFLHEIGLVHTDLKPENVLLVSNASKNIRLPYRNYSQKLLNNTE----IRLIDFGSATFE-DEYHSSVVSTRHYRAPEIILGVGWSYPCDIWSLGCIIVELFTG 604          
BLAST of mRNA_H-elongata_contig73548.15045.1 vs. uniprot
Match: A0A507EAV4_9FUNG (Protein kinase domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507EAV4_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 2.570e-12
Identity = 39/106 (36.79%), Postives = 54/106 (50.94%), Query Frame = 1
Query:    1 IAFFHSLGLVHADIKPENVVLYPRSGGNGCGGMRSSDLTNASQPPFDLRIIDLGNSVFAADAVPGVTAGTPSYLSPEANKGMPWGLPVDVWAAGCIIDEIVTGGRM 318
            +AF H LGLVH D+KPEN++L         GG R S           +R+ID G+++F  D    V + T  Y +PE      W  P D+W+ GCI+ E  TG  +
Sbjct:  385 VAFLHDLGLVHTDLKPENLMLVDNQT-RVVGGSRRSAKARKELLCTSIRLIDFGSAIFEEDYHSSVVS-TRHYRAPEIILCTGWSFPCDMWSVGCILVEFCTGDAL 488          
BLAST of mRNA_H-elongata_contig73548.15045.1 vs. uniprot
Match: S9R892_SCHOY (CMGC/CLK protein kinase Lkh1 n=1 Tax=Schizosaccharomyces octosporus (strain yFS286) TaxID=483514 RepID=S9R892_SCHOY)

HSP 1 Score: 71.6 bits (174), Expect = 2.600e-12
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 IAFFHSLGLVHADIKPENVVLYPRSGGNGCGGMR--SSDLTNASQPPFDLRIIDLGNSVFAADAVPGVTAGTPSYLSPEANKGMPWGLPVDVWAAGCIIDEIVTG 309
            +AF H +GLVH D+KPENV+L   +  N     R  S  + N ++    +R+ID G++ F  D        T  Y +PE   G+ W  P D+W+ GCII E+ TG
Sbjct:  489 VAFLHEIGLVHTDLKPENVLLVSNASKNVRLPYRNYSQKILNNTE----IRLIDFGSATFE-DEYHSSVVSTRHYRAPEIILGVGWSYPCDIWSLGCIIVELFTG 588          
BLAST of mRNA_H-elongata_contig73548.15045.1 vs. uniprot
Match: F0W2J1_9STRA (Protein kinase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2J1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.820e-12
Identity = 50/128 (39.06%), Postives = 63/128 (49.22%), Query Frame = 1
Query:    7 FFHSLGLVHADIKPENVVLYPRSGGN------GCGGMRSSDLTNASQPPFDLRIIDL-------GNSVFAADA-----------VPGV-TAGTPSYLSPEANKGMPWGLPVDVWAAGCIIDEIVTGGR 315
            F H LG+VH D+KPENV+L     GN      G G  R   L     P  D+RI DL       G S+   DA           VP     GTP Y++PE  +  P+G PVD+W+ G II E++TG R
Sbjct:  460 FLHDLGVVHCDLKPENVLLTDAKPGNQETHEIGTGD-RLRHLEAELDPHADVRICDLQVELCDFGLSIKVPDARFFKLTGDVHKVPFTQVTGTPGYIAPELLQRQPYGKPVDMWSIGIIIYEMLTGYR 586          
BLAST of mRNA_H-elongata_contig73548.15045.1 vs. uniprot
Match: A0A1G4MB41_LACFM (LAFE_0D03840g1_1 n=1 Tax=Lachancea fermentati TaxID=4955 RepID=A0A1G4MB41_LACFM)

HSP 1 Score: 70.9 bits (172), Expect = 4.820e-12
Identity = 41/120 (34.17%), Postives = 62/120 (51.67%), Query Frame = 1
Query:    1 IAFFHSLGLVHADIKPENVVLYPRS-----------------GGNGCGGMRSSDLTNASQPPFDLRIIDLGNSVFAADAVPGVTAGTPSYLSPEANKGMPWGLPVDVWAAGCIIDEIVTG 309
            + F H LG++H D+KPENV+L   S                   +  GG R   LTN      ++++ID G++VF  +  P V + T  Y +PE   G+ W  P D+W+ GC++ E+VTG
Sbjct:  354 VCFLHDLGIIHTDLKPENVLLCDESFVTKPLPQHQISAMSPRRKSASGGKRKL-LTNP-----EIKLIDFGSAVFHNEFHPAVIS-TRHYRAPEIVLGLGWSFPCDIWSIGCVLVELVTG 466          
BLAST of mRNA_H-elongata_contig73548.15045.1 vs. uniprot
Match: A0A1G4JPM6_9SACH (LAME_0F00914g1_1 n=1 Tax=Lachancea meyersii CBS 8951 TaxID=1266667 RepID=A0A1G4JPM6_9SACH)

HSP 1 Score: 70.9 bits (172), Expect = 4.850e-12
Identity = 42/121 (34.71%), Postives = 63/121 (52.07%), Query Frame = 1
Query:    1 IAFFHSLGLVHADIKPENVVLY------------------PRSGGNGCGGMRSSDLTNASQPPFDLRIIDLGNSVFAADAVPGVTAGTPSYLSPEANKGMPWGLPVDVWAAGCIIDEIVTG 309
            + F H LG++H D+KPENV+L                   PR   + C G R   LTN      ++++ID G++VF  +  P V + T  Y +PE   G+ W  P D+W+ GC++ E+VTG
Sbjct:  415 VCFLHDLGIIHTDLKPENVLLCDEFYVGKPLSQHQLSNLSPRRK-SACNGERKF-LTNP-----EVKLIDFGSAVFYNEFHPAVIS-TRHYRAPEIVLGLGWSFPCDIWSIGCVLVELVTG 527          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73548.15045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN4_ECTSI6.670e-3761.47Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A059LAU2_9CHLO1.330e-1739.64Protein kinase domain-containing protein (Fragment... [more]
A0A0P1L1A4_9SACH4.020e-1335.00LAQU0S07e03928g1_1 n=2 Tax=Lachancea TaxID=300275 ... [more]
LKH1_SCHPO1.400e-1240.57Dual specificity protein kinase lkh1 n=1 Tax=Schiz... [more]
S9W8I5_SCHCR1.910e-1239.05CMGC/CLK protein kinase Lkh1 n=1 Tax=Schizosacchar... [more]
A0A507EAV4_9FUNG2.570e-1236.79Protein kinase domain-containing protein n=2 Tax=S... [more]
S9R892_SCHOY2.600e-1238.10CMGC/CLK protein kinase Lkh1 n=1 Tax=Schizosacchar... [more]
F0W2J1_9STRA4.820e-1239.06Protein kinase putative n=1 Tax=Albugo laibachii N... [more]
A0A1G4MB41_LACFM4.820e-1234.17LAFE_0D03840g1_1 n=1 Tax=Lachancea fermentati TaxI... [more]
A0A1G4JPM6_9SACH4.850e-1234.71LAME_0F00914g1_1 n=1 Tax=Lachancea meyersii CBS 89... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73548contigH-elongata_contig73548:2034..2357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue3.3e-31
Seed eggNOG ortholog2880.D8LDN4
KEGG koko:K08287
EggNOG free text desc.protein serine/threonine/tyrosine kinase activity
EggNOG OGsKOG0667@1,KOG0671@2759
EC2.7.12.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.1683772-CDS-H-elongata_contig73548:2033..23571622931139.1683772-CDS-H-elongata_contig73548:2033..2357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73548 2034..2357 +
1691679714.6653996-CDS-H-elongata_contig73548:2033..23571691679714.6653996-CDS-H-elongata_contig73548:2033..2357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73548 2034..2357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73548.15045.1prot_H-elongata_contig73548.15045.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73548 2034..2357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73548.15045.1

>prot_H-elongata_contig73548.15045.1 ID=prot_H-elongata_contig73548.15045.1|Name=mRNA_H-elongata_contig73548.15045.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
IAFFHSLGLVHADIKPENVVLYPRSGGNGCGGMRSSDLTNASQPPFDLRI
IDLGNSVFAADAVPGVTAGTPSYLSPEANKGMPWGLPVDVWAAGCIIDEI
VTGGRMKN
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mRNA from alignment at H-elongata_contig73548:2034..2357+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73548.15045.1 ID=mRNA_H-elongata_contig73548.15045.1|Name=mRNA_H-elongata_contig73548.15045.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig73548:2034..2357+ (Himanthalia elongata Himel1 dioecious)
ATCGCATTCTTTCACTCGCTTGGACTCGTCCATGCTGATATTAAACCTGA GAACGTGGTGCTTTATCCTAGGAGCGGCGGCAACGGATGTGGTGGCATGA GAAGCAGCGATCTCACAAATGCCTCCCAGCCGCCGTTCGACCTTCGAATC ATCGATCTGGGCAACTCTGTTTTCGCTGCTGATGCCGTCCCTGGTGTGAC CGCAGGGACGCCGTCTTACCTGTCCCCCGAGGCGAACAAAGGCATGCCCT GGGGCCTCCCGGTCGATGTTTGGGCAGCTGGGTGTATTATAGACGAGATT GTCACGGGTGGGCGGATGAAGAAT
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Coding sequence (CDS) from alignment at H-elongata_contig73548:2034..2357+

>mRNA_H-elongata_contig73548.15045.1 ID=mRNA_H-elongata_contig73548.15045.1|Name=mRNA_H-elongata_contig73548.15045.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig73548:2034..2357+ (Himanthalia elongata Himel1 dioecious)
ATCGCATTCTTTCACTCGCTTGGACTCGTCCATGCTGATATTAAACCTGA
GAACGTGGTGCTTTATCCTAGGAGCGGCGGCAACGGATGTGGTGGCATGA
GAAGCAGCGATCTCACAAATGCCTCCCAGCCGCCGTTCGACCTTCGAATC
ATCGATCTGGGCAACTCTGTTTTCGCTGCTGATGCCGTCCCTGGTGTGAC
CGCAGGGACGCCGTCTTACCTGTCCCCCGAGGCGAACAAAGGCATGCCCT
GGGGCCTCCCGGTCGATGTTTGGGCAGCTGGGTGTATTATAGACGAGATT
GTCACGGGTGGGCGGATGAAGAATATCGCATTCTTTCACTCGCTTGGACT
CGTCCATGCTGATATTAAACCTGAGAACGTGGTGCTTTATCCTAGGAGCG
GCGGCAACGGATGTGGTGGCATGAGAAGCAGCGATCTCACAAATGCCTCC
CAGCCGCCGTTCGACCTTCGAATCATCGATCTGGGCAACTCTGTTTTCGC
TGCTGATGCCGTCCCTGGTGTGACCGCAGGGACGCCGTCTTACCTGTCCC
CCGAGGCGAACAAAGGCATGCCCTGGGGCCTCCCGGTCGATGTTTGGGCA
GCTGGGTGTATTATAGACGAGATTGTCACGGGTGGGCGGATGAAGAAT
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