mRNA_H-elongata_contig73314.15017.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73314.15017.1
Unique NamemRNA_H-elongata_contig73314.15017.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73314.15017.1 vs. uniprot
Match: D7FPR0_ECTSI (Sulfatase-modifying factor 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPR0_ECTSI)

HSP 1 Score: 376 bits (965), Expect = 9.470e-126
Identity = 187/278 (67.27%), Postives = 210/278 (75.54%), Query Frame = 1
Query:    4 FRIDKHPVTNDNFAAFVADSSYVTEAENFQWSFVLEYLLDAETIKEADDGIGRVQGSEYWVGVEGANWRQPEGPRSSLEKRGDFPVVQVSWVDADAYCKWAGRRLPTEAEWEYAARGGQVVIEEGSKDNRAGGWSVGNAWQGEFPTKNSLEDGYAGPSPATKFPPNALGIYDMLGNVWEWVDGGEPARRTLRGGSFVDYDPHQVSEEAAGESPSMGQGTVPTRGANHAITPGTRMETTQDSGSINTSFRCASGSNTSGTKRTVKRKGQQGRKGASADS 837
            F ID+H VTN+ FA FV DS YVTEAE F WSF LEY+LDAETIKEAD+GIGRV+GSE+WVGVEGANWRQPEGPRSSL+ RG+ PV QVSWVDADAYC WAGRRLPTEAEWEYAARGGQ +  E   D     W VGN+WQG FP  NS+EDGYAG +PAT F PNAL +YDMLGN WEWV GG+P RRTLRGGSFVD+DP  V+ E      + G   +P + ANHAITPGTRMETTQDSGS NTSFRCA         ++  + G   RK AS +S
Sbjct:   30 FNIDEHCVTNEQFAIFVKDSGYVTEAEKFGWSFALEYMLDAETIKEADEGIGRVKGSEHWVGVEGANWRQPEGPRSSLKSRGNVPVAQVSWVDADAYCSWAGRRLPTEAEWEYAARGGQTLASEHVGDKSTKMWLVGNSWQGHFPNTNSVEDGYAGLAPATAFAPNALEVYDMLGNAWEWVAGGDPTRRTLRGGSFVDFDP--VAAEK-----NNGSSGIPRQPANHAITPGTRMETTQDSGSANTSFRCA---------QSPLKSGGTSRKEASRES 291          
BLAST of mRNA_H-elongata_contig73314.15017.1 vs. uniprot
Match: A0A7S2Y1G9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1G9_9STRA)

HSP 1 Score: 234 bits (597), Expect = 2.800e-70
Identity = 122/253 (48.22%), Postives = 154/253 (60.87%), Query Frame = 1
Query:    1 SFRIDKHPVTNDNFAAFVADSSYVTEAENFQWSFVLEYLLDAETIKEADDGIGRVQGSEYWVGVEGANWRQPEGPRSSLEKRGDFPVVQVSWVDADAYCKWAGRRLPTEAEWEYAARGGQVVIEEGSKDNRAGGWSVGNAWQGEFPTKNSLEDGYAGPSPATKFPPNALGIYDMLGNVWEWVDGGEPARRTLRGGSFVDYDPHQVSEEAAGESPSMGQGTVPTRGANHAITPGTRMETTQDSGSINTSFRCAS 759
            +F +D+H VTN+ F  F+ D+ Y T+A+ F WSFVL Y    ET  +AD+ +GR++G   W+GV  A W  P GP S +E   D PVVQVSW DA AYCKWAGRRL  E EWEYAAR G +V +       A    + N WQG+FP KN++EDGYAG +P   F PN+ G Y+M+GNVWEWV GG   +R L+GGSF+D      S +A+                NH     TR  TT DSG++NT FRCAS
Sbjct:   51 AFWLDEHAVTNEQFIDFINDTGYETDADKFGWSFVLAYFASEETTIKADNDMGRIEGDPSWLGVREATWEHPLGPDSDVEDILDHPVVQVSWNDARAYCKWAGRRLAREKEWEYAARSG-LVGQPFPWGKEATPQQL-NYWQGDFPLKNNVEDGYAGTAPVKSFEPNSFGFYNMVGNVWEWVGGGSKEKRILKGGSFID------SIDAS---------------FNHPALVSTRQLTTADSGNMNTGFRCAS 280          
BLAST of mRNA_H-elongata_contig73314.15017.1 vs. uniprot
Match: A0A8J2SID5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SID5_9STRA)

HSP 1 Score: 235 bits (599), Expect = 3.500e-70
Identity = 124/256 (48.44%), Postives = 156/256 (60.94%), Query Frame = 1
Query:    1 SFRIDKHPVTNDNFAAFVADSSYVTEAENFQWSFVLEYLLDAETIKEADD--GIGRVQGSEYWVGVEGANWRQPEGPRSSLEKRGDFPVVQVSWVDADAYCKWAGRRLPTEAEWEYAARGG--QVVIEEGSKDNRAGGWSVGNAWQGEFPTKNSLEDGYAGPSPATKFPPNALGIYDMLGNVWEWVDGGEPARRTLRGGSFVDYDPHQVSEEAAGESPSMGQGTVPTRGANHAITPGTRMETTQDSGSINTSFRCA 756
            +F ID   V+ND F  FV  + + TEAE F+WSFVLE L    TI ++D   G+GRVQ S +W+GV GA WR+PEGP SS+  +G++PV+QVSW DA AYC WAG+RLP+E EWE AARGG        G +D+        N W+G FP +N  +DGY G +P  ++ PNA G+Y+ +GNVWEW  GG P +R LRGGSFVD                    TV     NHA+   TRM+ T DSG  NT FRCA
Sbjct:   92 TFDIDATVVSNDEFKKFVRATKHETEAEKFRWSFVLEMLASNATINQSDSKHGLGRVQSSPHWLGVYGATWRKPEGPDSSIRGKGNYPVIQVSWNDAVAYCAWAGKRLPSELEWETAARGGLEDEPFPWGDRDDDV--HKRMNGWEGAFPDENLAKDGYIGVAPVDQYAPNAFGVYNAVGNVWEWCAGGTPEKRPLRGGSFVD--------------------TVD-GSHNHALRCATRMDQTADSGGHNTGFRCA 324          
BLAST of mRNA_H-elongata_contig73314.15017.1 vs. uniprot
Match: A0A8J5XF83_DIALT (FGE-sulfatase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XF83_DIALT)

HSP 1 Score: 232 bits (591), Expect = 4.360e-68
Identity = 125/255 (49.02%), Postives = 155/255 (60.78%), Query Frame = 1
Query:    4 FRIDKHPVTNDNFAAFVADSSYVTEAENFQWSFVLEYLLDAETIK--EADDGIGRVQGSEYWVGVEGANWRQPEGPRSSLEKRGDFPVVQVSWVDADAYCKWAGRRLPTEAEWEYAARGGQVVIEEGSKDNRAGGWSVGNAWQGEFPTKNSLEDGYAGPSPATKFPPNALGIYDMLGNVWEWVDGGEPARRTLRGGSFVDYDPHQVSEEAAGESPSMGQGTVPTRGANHAITPGTRMETTQDSGSINTSFRCASG 762
            F I+   VTN  F AFV  + Y T+AE F+WSF L   LDAET+   +AD G+GR++ + +WVGV GA WRQPEGPRSS+  R D PVV  S+ DA A+C WAGRRLPTE EWE+AARG ++  E         G ++ N WQG FP  N+  DGYAG  PA  + PNA G+Y+ +GNVWEW  GG+  +R LRGGSFVD                    +V  R  NH +   TRM+   DSGS N  FRCA+G
Sbjct:   88 FSIEDAAVTNAQFRAFVRATGYKTDAERFRWSFALAPFLDAETLARADADGGLGRLRDAPHWVGVAGAYWRQPEGPRSSIRGREDHPVVHASYNDALAFCTWAGRRLPTELEWEFAARG-RINDEPFPWGGDEDGGTL-NGWQGPFPDGNTRADGYAGTCPARAYAPNAYGLYNTVGNVWEWASGGDDKKRPLRGGSFVD--------------------SVDGR-TNHPLRVSTRMDNAADSGSFNIGFRCAAG 319          
BLAST of mRNA_H-elongata_contig73314.15017.1 vs. uniprot
Match: F0XYZ8_AURAN (FGE-sulfatase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYZ8_AURAN)

HSP 1 Score: 222 bits (566), Expect = 6.230e-67
Identity = 106/185 (57.30%), Postives = 126/185 (68.11%), Query Frame = 1
Query:    1 SFRIDKHPVTNDNFAAFVADSSYVTEAENFQWSFVLEYLLDAETIKEAD--DGIGRVQGSEYWVGVEGANWRQPEGPRSSLEKRGDFPVVQVSWVDADAYCKWAGRRLPTEAEWEYAARGG--QVVIEEGSKDNRAGGWSVGNAWQGEFPTKNSLEDGYAGPSPATKFPPNALGIYDMLGNVWEW 543
            +FRID   V+ND F  FV D+ Y+TEAENF+WSFVLE      TI ++D  +G+GRVQ S +W+GV GA WR+PEGP SSL  RGD P   +SW DA AYCKWAGRRLPTE EWE AARGG        G  D+    W+  NAW+GEFP +NS  DG+ GP P   + PNA GIY+ LGNVWEW
Sbjct:   28 AFRIDPTAVSNDQFKRFVRDTQYLTEAENFRWSFVLELTASNATINQSDAKNGLGRVQASPWWMGVFGAYWRKPEGPDSSLRGRGDHPATHISWNDASAYCKWAGRRLPTEVEWEMAARGGLEDEPFPWGDADHDP--WTRLNAWEGEFPDENSARDGFVGPGPVDAYAPNAFGIYNALGNVWEW 210          
BLAST of mRNA_H-elongata_contig73314.15017.1 vs. uniprot
Match: A0A7S2SNU0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNU0_9STRA)

HSP 1 Score: 219 bits (557), Expect = 8.410e-63
Identity = 127/303 (41.91%), Postives = 168/303 (55.45%), Query Frame = 1
Query:    1 SFRIDKHPVTNDNFAAFVADSSYVTEAENFQWSFVLEYLLDAETIKEAD--DGIGRVQGSEYWVGVEGANWRQPEGPRSSLEKRGDFPVVQVSWVDADAYCKWAGRRLPTEAEWEYAARGGQVVIEEGSKDNRAGGWSVGNAWQGEFPTKNSLEDGYAGPSPATKFPPNALGIYDMLGNVWEWVDGGEPARRTLRGGSFVDYDPHQVSEEAAGESPSMGQGTVPTRGANHAITPGTRMETTQDSGSINTSFRCASGSNTSGTKRTVKRKG-QQGRKGASADSEL*VVF---LLGLNIY*SGMG 891
            +F ID   V+N  F  FV  + Y T+AE F+WSFVLEYL   +T+   D   G GRV+ + +W+ V+GA WR+PEGP SSL  R   PV  VS+ DA AYC+WAGRRLPTE EWE+AARGG  + +E      A   +  N W G+FP+ N L DG+ G  P   F PN  G+Y+M+GNVWEWV+ G    R +RGGS++D                    T+  R  NHA+   +R     DSG  +T FRCASG   +  +R +  +G   G  G S +    V+    + GL  Y + MG
Sbjct:  119 TFSIDITAVSNSQFQKFVRATKYKTDAEKFEWSFVLEYLASKDTVDAVDGESGYGRVKDAPHWMAVQGAYWRRPEGPGSSLRGRASHPVTHVSYNDAKAYCEWAGRRLPTEREWEHAARGG--LEDEPFPWGSAALSNRMNGWTGDFPSANDLSDGFDGTCPVDTFLPNDFGLYNMVGNVWEWVEAGSEQERVVRGGSYID--------------------TIDGR-HNHALRVSSRQVVPPDSGGGSTGFRCASGDLVNSDRREIAIEGLDPGADGMSQEKLQKVIAEGGVEGLTRYLAEMG 398          
BLAST of mRNA_H-elongata_contig73314.15017.1 vs. uniprot
Match: A0A7S3YFE4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFE4_HETAK)

HSP 1 Score: 214 bits (545), Expect = 2.110e-62
Identity = 116/261 (44.44%), Postives = 150/261 (57.47%), Query Frame = 1
Query:    4 FRIDKHPVTNDNFAAFVAD------SSYVTEAENFQWSFVLEYLLDAETIK--EADDGIGRVQGSEYWVGVEGANWRQPEGPRSSLEK--RGDFPVVQVSWVDADAYCKWAGRRLPTEAEWEYAARGGQVVIEEGSKDNRAGGWSVGNAWQGEFPTKNSLEDGYAGPSPATKFPPNALGIYDMLGNVWEWVDGGEPARRTLRGGSFVDYDPHQVSEEAAGESPSMGQGTVPTRGANHAITPGTRMETTQDSGSINTSFRCA 756
            F+I+K  V+N+ F  FV D        Y T+A+ F WSFVL+  L  E +   ++D+G+GR+Q + +WVGV  ANWR PEG  S + K  + D P + +SW DA AYCKWAGRRLP E EWEYAARGG   +        A  + + N WQG FP +N+ EDG+A  +P   F PN  G+Y+ +GN WEWV GG+P  R LRGGSF+D      S + A                NH +   +R   T DSGS NT FRCA
Sbjct:   72 FQIEKCAVSNEQFKIFVEDVERTTGKPYQTDADKFGWSFVLDSTLSKEQLDFADSDEGMGRIQNAPHWVGVLKANWRHPEGEDSDVFKQDKADHPAIHISWNDAKAYCKWAGRRLPKEREWEYAARGGHDGLPYPWGIPEASPFDM-NYWQGAFPRENTAEDGFATTAPVAAFAPNHFGLYNTVGNTWEWVAGGQPEARVLRGGSFLD------SLDGA---------------FNHPVMTSSRQLNTADSGSYNTGFRCA 310          
BLAST of mRNA_H-elongata_contig73314.15017.1 vs. uniprot
Match: UPI001FEA6B4F (formylglycine-generating enzyme family protein n=1 Tax=Bacillus tamaricis TaxID=2069301 RepID=UPI001FEA6B4F)

HSP 1 Score: 212 bits (540), Expect = 6.830e-62
Identity = 116/254 (45.67%), Postives = 147/254 (57.87%), Query Frame = 1
Query:    1 SFRIDKHPVTNDNFAAFVADSSYVTEAENFQWSFVLEYLLDAETIKEADDGIGRVQGSEYWVGVEGANWRQPEGPRSSLEKRGDFPVVQVSWVDADAYCKWAGRRLPTEAEWEYAARGG-QVVIEEGSKDNRAGGWSVGNAWQGEFPTKNSLEDGYAGPSPATKFPPNALGIYDMLGNVWEWVDGGEPARRTLRGGSFVDYDPHQVSEEAAGESPSMGQGTVPTRGAN-HAITPGTRMETTQDSGSINTSFRCA 756
            SF +D + VTN  F AF+ D+ YVTEAE F WSFV   L+  ET K+    I +V+ + +W  VEGA W  PEGP S++E R D PV+ VSW DA+ YC+WAG+RLPTEAEWEYAARGG +  +     D    G    N WQG+FP KN+LEDGY G +PA  FPPN  G++++ GNVWEW       +   RGGS     P      A G+S  M  G+     +  +      R   T DS + N  FRCA
Sbjct:   49 SFYMDAYAVTNREFHAFIKDTGYVTEAERFGWSFVFYQLVSKETAKKV---IQQVESTPWWWVVEGATWNHPEGPDSTIEGRWDHPVIHVSWNDAETYCEWAGKRLPTEAEWEYAARGGLEQKLYPWGDDLNPSGKHYCNIWQGQFPGKNTLEDGYLGTAPAKSFPPNNFGLFNVAGNVWEWCSDWFTNQSENRGGSENPQGP------ATGDSKVMRGGSYLCHHSYCNRYRVAARTSNTPDSSTGNIGFRCA 293          
BLAST of mRNA_H-elongata_contig73314.15017.1 vs. uniprot
Match: A0A812H9J1_9DINO (SUMF2 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812H9J1_9DINO)

HSP 1 Score: 212 bits (540), Expect = 5.810e-61
Identity = 123/278 (44.24%), Postives = 156/278 (56.12%), Query Frame = 1
Query:    1 SFRIDKHPVTNDNFAAFVADSSYVTEAENFQWSFVLEYLLDAETIKEADDGIGRVQGSEYWVGVEGANWRQPEGPRSSLEKRG-DFPVVQVSWVDADAYCKWAGRRLPTEAEWEYAARGGQ---VVIEEGSKDNRAGGWSVGNAWQGEFPTKNSLEDGYAGPSPATKFPPNALGIYDMLGNVWEWVDGGEPARR-------TLRGGSFVDYDPHQVSEEAAGESPSMGQGTVPTRGANHAITPGTRMETTQDSGSINTSFRCASGSNTSGTKRTVKRK 801
            ++ ID+ PVTN +F  FV ++ + T+AE + WSFVL   L    ++E+   I   + + +WV VE A WR PEG  SSL+ R  D+PVV +SW DA+AYC+WAG+RLPTEAEWE AARG +   +   E S     G W + N WQG FP +N LEDGY   SP   +P N+ G++  +GNVWEW     P  R       TL+GGSF+D          AGE              NH  T  TRM  T DSGS NT FRCASG    G KR   +K
Sbjct:   67 AYAIDETPVTNSHFREFVKETKFKTDAERYGWSFVLNSSLSQAVLRESPQHI---ESAPHWVAVENAWWRHPEGRDSSLKDRWEDYPVVHISWTDANAYCEWAGKRLPTEAEWENAARGKRKESLYPWEDSDVPGKGRWKM-NIWQGRFPFENLLEDGYHAISPVKAYPANSYGVFSTVGNVWEWTSDPFPGSRPEEEPQWTLKGGSFID--------SPAGEF-------------NHKATVVTRMGNTADSGSYNTGFRCASGKGGGGRKRPPDQK 319          
BLAST of mRNA_H-elongata_contig73314.15017.1 vs. uniprot
Match: A0A7S2ME14_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ME14_9STRA)

HSP 1 Score: 210 bits (535), Expect = 9.050e-61
Identity = 118/260 (45.38%), Postives = 153/260 (58.85%), Query Frame = 1
Query:    4 FRIDKHPVTNDNFAAFVADSSYVTEAENFQWSFVLEYLLDAETIKEADD--GIGRVQGSEYWVGVEGANWRQPEGPRSSLEKRGDFPVVQVSWVDADAYCKWAGRRLPTEAEWEYAARGG--QVVIEEGSKDNRAGGWSVGNAWQGEFPTKNSLEDGYAGPSPATKFPPNALGIYDMLGNVWEWVDG---GEPARRTLRGGSFVDYDPHQVSEEAAGESPSMGQGTVPTRGANHAITPGTRMETTQDSGSINTSFRCASG 762
            F +D   VTN  F  FV ++ + TEAE +QWSFVLEYL   E ++E D   G GRV+ + +W+ V+GA WR+PEG  S+L  RG+ PVV VS+ D+ AYC+WAGRRLP E EWEY ARGG        GS D R       N W G FPT+NS  D YAG +P   + PNA G+Y+M+GNVWEW +G   GE   + +RGGS++D     ++ E                  NHA+   +R   + DSG  N+ FRCASG
Sbjct:   19 FGLDITTVTNTQFQKFVRETKFRTEAEIYQWSFVLEYLAAPEIVEEVDSPQGYGRVKDAHHWMAVKGAYWRRPEGIGSNLRGRGNHPVVHVSYNDSLAYCEWAGRRLPMEKEWEYVARGGLEDEPFPWGS-DPRP---EKCNGWTGNFPTENSKLDQYAGTAPVDFYEPNAYGVYNMVGNVWEWTEGKRGGEEKEKAIRGGSYIDT----INGEY-----------------NHALRVSSRQMVSADSGGGNSGFRCASG 253          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73314.15017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPR0_ECTSI9.470e-12667.27Sulfatase-modifying factor 2 n=1 Tax=Ectocarpus si... [more]
A0A7S2Y1G9_9STRA2.800e-7048.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2SID5_9STRA3.500e-7048.44Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A8J5XF83_DIALT4.360e-6849.02FGE-sulfatase domain-containing protein n=1 Tax=Di... [more]
F0XYZ8_AURAN6.230e-6757.30FGE-sulfatase domain-containing protein (Fragment)... [more]
A0A7S2SNU0_9STRA8.410e-6341.91Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3YFE4_HETAK2.110e-6244.44Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI001FEA6B4F6.830e-6245.67formylglycine-generating enzyme family protein n=1... [more]
A0A812H9J1_9DINO5.810e-6144.24SUMF2 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A7S2ME14_9STRA9.050e-6145.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73314contigH-elongata_contig73314:244..3119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue9.2e-21
Seed eggNOG ortholog2880.D7FPR0
KEGG koko:K13444
KEGG Pathwayko04142,map04142
EggNOG free text desc.Formylglycine-generating oxidase activity
EggNOG OGs2QVDG@2759,COG1262@1
EC1.8.3.7
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size1388
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73314.15017.1prot_H-elongata_contig73314.15017.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73314 2251..2577 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931136.059082-UTR-H-elongata_contig73314:243..3531622931136.059082-UTR-H-elongata_contig73314:243..353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73314 244..353 +
1691679713.306627-UTR-H-elongata_contig73314:243..3531691679713.306627-UTR-H-elongata_contig73314:243..353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73314 244..353 +
1622931136.0742247-UTR-H-elongata_contig73314:707..9111622931136.0742247-UTR-H-elongata_contig73314:707..911Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73314 708..911 +
1691679713.3282878-UTR-H-elongata_contig73314:707..9111691679713.3282878-UTR-H-elongata_contig73314:707..911Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73314 708..911 +
1622931136.0919735-UTR-H-elongata_contig73314:1338..15341622931136.0919735-UTR-H-elongata_contig73314:1338..1534Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73314 1339..1534 +
1691679713.345844-UTR-H-elongata_contig73314:1338..15341691679713.345844-UTR-H-elongata_contig73314:1338..1534Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73314 1339..1534 +
1622931136.1113112-UTR-H-elongata_contig73314:2241..22501622931136.1113112-UTR-H-elongata_contig73314:2241..2250Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73314 2242..2250 +
1691679713.355666-UTR-H-elongata_contig73314:2241..22501691679713.355666-UTR-H-elongata_contig73314:2241..2250Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73314 2242..2250 +
1622931136.13984-UTR-H-elongata_contig73314:2577..31191622931136.13984-UTR-H-elongata_contig73314:2577..3119Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73314 2578..3119 +
1691679713.3732178-UTR-H-elongata_contig73314:2577..31191691679713.3732178-UTR-H-elongata_contig73314:2577..3119Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73314 2578..3119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931136.1257205-CDS-H-elongata_contig73314:2250..25771622931136.1257205-CDS-H-elongata_contig73314:2250..2577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73314 2251..2577 +
1691679713.364449-CDS-H-elongata_contig73314:2250..25771691679713.364449-CDS-H-elongata_contig73314:2250..2577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73314 2251..2577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73314.15017.1

>prot_H-elongata_contig73314.15017.1 ID=prot_H-elongata_contig73314.15017.1|Name=mRNA_H-elongata_contig73314.15017.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MLGNVWEWVDGGEPARRTLRGGSFVDYDPHQVSEEAAGESPSMGQGTVPT
RGANHAITPGTRMETTQDSGSINTSFRCASGSNTSGTKRTVKRKGQQGRK
GASADSEL*
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mRNA from alignment at H-elongata_contig73314:244..3119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73314.15017.1 ID=mRNA_H-elongata_contig73314.15017.1|Name=mRNA_H-elongata_contig73314.15017.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2876bp|location=Sequence derived from alignment at H-elongata_contig73314:244..3119+ (Himanthalia elongata Himel1 dioecious)
TCATTTCGCATCGATAAGCATCCAGTCACGAACGATAACTTCGCAGCCTT CGTGGCGGATTCGAGCTACGTCACTGAGGCGGAAAATTTCCAGTGGAGTT TCGTGCTTGAGTGGGTGCTTCCTCCAGATTGCTCTTTCCTTTTTAATGTA TTTTTTAAATGTCAAATTGCACATGTCGAGCCACAAGATTTCCTCTCTTG CTGCTATTAATACCAACGCTGCCCGCTTGGGAGCCATGTACGCTGCCCGA TATCTTTTGAGGTCCAATGTTCAGCTAAACATGCCCACCGTCGCGTATGC CGTGTACCGTATACTTTGGAGGTTGTCACGAGTGGCGGTAAATTGTTTTC ATACCATACCGTTACATTTCTTGATTTCGATGAATCTGTAGCCGGGCTTG CGCGATGTTAACATTTTCAAATCTTGTGACATTTGGTCGCTTCGTTTTTA CCCTTATGGCCCAGGTATCTGCTTGATGCAGAGACTATCAAGGAAGCTGA CGATGGCATCGGAAGAGTCCAGGGTTCGGAATACTGGGTTGGGGTGGAAG GTGCAAACTGGCGACAACCGGAGGGGCCACGATCGTCACTCGAGAAGAGA GGAGACTTCCCGGTGGTGCAGGTTTCGTGGGTGGATGCCGACGCTTATTG CAAATGGGCTGGCAGACGGTAAGCGAAAGAAAAACGCTGAGGAATGATAT GCGATGATGGTTTACAACGAGGGTGATATGCGATGAAGCCATTAAAGTTT CTCTAGACCCTTGCGCAGAAGCCATTGGTATTTAAGGCGTATGCCGCGAG AACCGAGGCGTTAAAAACGCGCGCCATCGCCATCCCCCGACGTTTGAGAC TGATAGATCTTCGTCGTGATCGCCGAAAAGAGTATCGCTTGCCAATATCA CCGTCACCGTCACGCTGAGAGACCCAACAATACGGGATCAATATAACACC ATAACATCATCACACTATCACACACCATGACGCTAACGTGTGACGGATAA TCTGCCTCGAAGGACGAAGAGATTTGAGCATAATATCTCTAGCGGGGATC CCCTGAAAACTGAAAACTAACGTAACTCAATGGTGTGCATGGCAGACTTC CGACTGAAGCTGAGTGGGAATACGCAGCTCGCGGCGGCCAGGTTGTTATT GAGGAAGGCTCAAAAGACAACCGGGCGGGGGGTTGGAGTGTGGGAAATGC TTGGCAGGGGGAATTTCCGACAAAAAATTCTCTTGAGGACGGGTACGCGG GACCTTCCCCTGCCACAAAATTCCCTCCAAATGCTTTAGGGGTGAGATTG CCTTTAGTCTAGTCCTTGCACCATGTTACCATCGTAATTTGATGTAATAG AAGAAATGTCATTGTGGATGTCATCGTCAATGTCGGGAACTGGTGGTGAA AGGGTACCGAAGAATCTAATACGTCCACCGACCACGAACGTCGTGGTCAA CATAACTCAAGCAACAGTCAGGGGATATCGAAATATGTGTAGCCGGAAAC CAACCACCTAGACCAATCAGCGCTGGATGGTCTTAGATCTATAAAAAGCT AGACAAATATTTTTATTTAAAAGTTGGGCCATGAATTCGAGCCCCGGCAC AAAAATCGCGAGACAGTATCCTGGCGTGGGGGGGGTGCGTCCTCGTGAAA AAGAGAAGTCGAGCGTCGGACACCTGGGCCGAAACTTCCGTCGCCGGAAA TTAACCACTTGCGCTAGTCAGCGCTGCTTTCCGGCTGTTGACATGTTAAT TGACATATTAACGGTGACCAAAGCCTATTGGAGAATGCCAAGAATGCTTG CCCGTGACTTCAGTGCTACGCAGAAAATTTGCGAAGCGTTATTTCGGGTG ATGTTGGAGGCTTTCCCTGAATCTTGTATATCCGCACAAATACTTTAATT GGTATCCGAAGGAATCAGTCACTCTGTCACTCATTCCACTAGAGTTCAAA ACTCCTCTACCCCTCTGACCGCCCCGACGTGACTCGGTCATATCCCAGAT CTACGACATGTTGGGAAACGTGTGGGAGTGGGTAGACGGCGGGGAACCCG CTCGACGCACTCTCCGCGGAGGCTCGTTCGTTGACTACGACCCCCACCAG GTTTCCGAAGAAGCAGCCGGAGAATCGCCTTCCATGGGACAGGGTACCGT TCCCACGCGAGGGGCGAATCACGCGATCACACCAGGGACCCGAATGGAAA CCACCCAAGATAGCGGCAGCATAAACACGTCTTTCAGATGTGCTTCAGGC TCCAACACCAGCGGAACAAAACGAACAGTAAAAAGGAAAGGACAGCAGGG AAGAAAAGGGGCCAGCGCTGATAGTGAGCTTTGAGTAGTTTTCCTTCTTG GCCTTAATATATACTAATCTGGTATGGGGTATAGTCTATACTATTACAGT ATAGTATTTACCATATACTGTACAGTATAATATTTCCTGGGTATGTTAAA TGCGACACGTCGGGAGGATTGATTGTGAAGGCAAGGCAGTAAGGCGACGA ATACCTCATGCGTCTTTTTGTCACTTGACAAAAACATTGCTGCCTTATCA CTTCTCACCTCTCACCTCTCACCACCTGTTTGGGTACTGTAATCATCATC TATCGTGTATCGCGTAACAGACATGTACATCCAGCTTAAGAGAAAAAAAA CAGGCATTCAAAATTAACTCAGTATTATTATGGGGATTATTCAAAGATTT CTTCCCAAGTTTCCTTTACTGGGCGTGACGAGCTTCGACGCGCTGACCTC GTAGGGCAAAGTATGCTCCCTCCGTCTGTTTGTGTGAGTGGGCTGATATT GTCGCTGCACCATTTTTTATGCATATTATTTTTATTTAAAAGACTTTAGG CTCATTCTAACGCTTCGAACATCCAC
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Coding sequence (CDS) from alignment at H-elongata_contig73314:244..3119+

>mRNA_H-elongata_contig73314.15017.1 ID=mRNA_H-elongata_contig73314.15017.1|Name=mRNA_H-elongata_contig73314.15017.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig73314:244..3119+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGGAAACGTGTGGGAGTGGGTAGACGGCGGGGAACCCGCTCGACG
CACTCTCCGCGGAGGCTCGTTCGTTGACTACGACCCCCACCAGGTTTCCG
AAGAAGCAGCCGGAGAATCGCCTTCCATGGGACAGGGTACCGTTCCCACG
CGAGGGGCGAATCACGCGATCACACCAGGGACCCGAATGGAAACCACCCA
AGATAGCGGCAGCATAAACACGTCTTTCAGATGTGCTTCAGGCTCCAACA
CCAGCGGAACAAAACGAACAGTAAAAAGGAAAGGACAGCAGGGAAGAAAA
GGGGCCAGCGCTGATAGTGAGCTTTGAATGTTGGGAAACGTGTGGGAGTG
GGTAGACGGCGGGGAACCCGCTCGACGCACTCTCCGCGGAGGCTCGTTCG
TTGACTACGACCCCCACCAGGTTTCCGAAGAAGCAGCCGGAGAATCGCCT
TCCATGGGACAGGGTACCGTTCCCACGCGAGGGGCGAATCACGCGATCAC
ACCAGGGACCCGAATGGAAACCACCCAAGATAGCGGCAGCATAAACACGT
CTTTCAGATGTGCTTCAGGCTCCAACACCAGCGGAACAAAACGAACAGTA
AAAAGGAAAGGACAGCAGGGAAGAAAAGGGGCCAGCGCTGATAGTGAGCT
TTGA
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