mRNA_H-elongata_contig73184.14996.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73184.14996.1
Unique NamemRNA_H-elongata_contig73184.14996.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A2Z6QM80_9GLOM (Uncharacterized protein n=7 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QM80_9GLOM)

HSP 1 Score: 104 bits (259), Expect = 9.360e-20
Identity = 81/265 (30.57%), Postives = 138/265 (52.08%), Query Frame = 1
Query:    1 KARQHVVTLMKIAAHVAQHELPVSTFASHVELVR--DCEGNTFPDKT--YENDVGAWQLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLSRGTAVAAL 783
            KA+ H+ +LMKI   +A++++ ++  +  V+L R   C        T  YEN+V   ++L A+     + +  +L ++   G+ +DESTD S   ++ + V Y +  + +V  L L  + + D+ T          I +A+ D+ +   GLT  KLM FASDGAS M+G++ G A+ + + N  L  THC+AHR +LA +S    VD    A+ ++  +  + S SS R   L+   E +G   +  +   ++R+LS   AV  L
Sbjct:  129 KAQNHIGSLMKIIFWLAENDISLNKLSEVVKLCRILGCPQLISASSTINYENNVSGREILSAISISIEETIWNELNEAIAFGIMVDESTDISSEPHLIIYVKYCLHGKIKVRFLKLLQLKSKDSKT----------IFEAIIDLFDKK-GLT-NKLMSFASDGASVMLGRSTGVASRIKERNECLFITHCIAHRLALACNSAEKKVDFCKHAEHIIKSVYNFFSNSSKRVDILRKYQEILGHPILKIKQIYEVRWLSWYEAVKNL 381          
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A8H3QK06_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3QK06_9GLOM)

HSP 1 Score: 102 bits (255), Expect = 1.530e-19
Identity = 77/257 (29.96%), Postives = 134/257 (52.14%), Query Frame = 1
Query:    1 KARQHVVTLMKIAAHVAQHELPVSTFASHVELVR--DCEGNTFPDKT--YENDVGAWQLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLS 759
            KA+ H+ +LMKI   +A++++ ++  +  ++L R   C        T  YEN+V   ++L A+     K +  +L ++   G+ +DESTD S   +  + V Y +  + +V  L L  + + D+ T          I +A+ D+ +   GLT  KLM FASDGAS M+G++ G A+ + + N +L   HC+AHR +LA +S    VD    A+ ++  +  + S SS R   L+   E +G   +  +   ++R+LS
Sbjct:  129 KAQNHIGSLMKIIFWLAENDISLNKLSEVIKLCRILGCPQLISASSTINYENNVSGREILSAISILIEKTIWNELNEAIAFGIMVDESTDISSEPHFIIYVKYCLHRKIKVRFLKLLQLKSKDSKT----------IFEAIIDLFDKK-GLT-NKLMSFASDGASVMLGRSTGVASRIKERNEYLFIIHCIAHRLALACNSAEKKVDFCKHAEHIIKSVYNFFSNSSKRVDILRKYQEILGHPILKIKQIYEVRWLS 373          
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A7D9HI41_PARCT (Zinc finger 862-like n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HI41_PARCT)

HSP 1 Score: 89.0 bits (219), Expect = 8.970e-15
Identity = 75/240 (31.25%), Postives = 108/240 (45.00%), Query Frame = 1
Query:  160 QLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGE------------------KHVSPQAFIKIRFLSRGTAVAALVKGYPVSLVFLKGE 825
            +LL +L E +L+++   L  S FIGL IDESTDRS   +I  VV Y      ++    LK    +   T     A  E +KK + D       + V KL G   DGAS M     G   LL +ENP LI  HC+ HR  LA S     +        +++ +  +++ S  R    KNLA+ +G                   K++  +    IR+LS G AV A++  Y   L+ L+ E
Sbjct:  343 ELLHSLSEVFLRKMLNHLNSSPFIGLGIDESTDRSQEKHIAAVVRYVDSNETKIKTSFLK----LSVITSGTAPAIVEAVKKILGDF-----SIPVNKLTGLGIDGASVMASDMNGVLGLLQRENPFLIGIHCINHRLHLAVSKAAKDIKNVNTLSTILSTIYQHVNNSPNRLQKFKNLADVLGAINHDNAPEEGNENIAPSLKYLKFKRIFDIRWLSVGEAVKAVIHNYQPLLILLEEE 573          
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A7D9I064_PARCT (Zinc finger 862-like n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I064_PARCT)

HSP 1 Score: 86.7 bits (213), Expect = 2.750e-14
Identity = 74/240 (30.83%), Postives = 107/240 (44.58%), Query Frame = 1
Query:  160 QLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGE------------------KHVSPQAFIKIRFLSRGTAVAALVKGYPVSLVFLKGE 825
            +LL +L E + +++   L  S FIGL IDESTDRS   +I  VV Y      ++    LK    +   T     A  E +KK + D       + V KL G   DGAS M     G   LL +ENP LI  HC+ HR  LA S     +        +++ +  +++ S  R    KNLA+ +G                   K++  +    IR+LS G AV A++  Y   L+ L+ E
Sbjct:  233 ELLHSLSEVFQRKMLNHLNSSPFIGLGIDESTDRSQEKHIAAVVRYVDSNETKIKTSFLK----LSVITSGTAPAIVEAVKKILGDF-----SIPVNKLTGLGIDGASVMASDMNGVLGLLQRENPFLIGIHCINHRLHLAVSKAAKDIKNVNTLSTILSTIYQHVNNSPNRLQKFKNLADVLGAINHDNAPEEGNENIAPSLKYLKFKRIFDIRWLSVGEAVKAVIHNYQPLLILLEEE 463          
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A7D9JHE5_PARCT (Zinc finger 862-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JHE5_PARCT)

HSP 1 Score: 81.6 bits (200), Expect = 2.480e-13
Identity = 70/223 (31.39%), Postives = 97/223 (43.50%), Query Frame = 1
Query:  211 LQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGE------------------KHVSPQAFIKIRFLSRGTAVAALVKGYPVSLVFLKGE 825
            L  S FIGL IDESTDRS   +I  VV Y      ++    LK    +   T     A  E +KK + D       + V KL G   DGAS M     G   LL +ENP LI  HC+ HR  LA S     +        +++ +  +++ S  R    KNLA+ +G                   K++  +    IR+LS G AV A++  Y   L+ L+ E
Sbjct:    5 LNSSPFIGLGIDESTDRSQEKHIAAVVRYVDSNETKIKTSFLK----LSVITSGTAPAIVEAVKKILGDF-----SIPVNKLTGLGIDGASVMASDMNGVLGLLQRENPFLIGIHCINHRLHLAVSKAAKDIKNVNTLSTILSTIYQHVNNSPNRLQKFKNLADVLGAINHDNAPEEGNENIAPSLKYLKFKRIFDIRWLSVGEAVKAVIHNYQPLLILLEEE 218          
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: UPI001E1E0729 (zinc finger protein 862-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0729)

HSP 1 Score: 82.4 bits (202), Expect = 2.540e-13
Identity = 75/268 (27.99%), Postives = 123/268 (45.90%), Query Frame = 1
Query:   16 VVTLMKIAAHVAQHELPVSTFASHVELVRDCEGNTFPDK---------TYENDVGAWQLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHY-EVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLSRGTAVAALVK 789
            V+  +K    +AQ  +P++ F S  EL R+ +    PD           YE+   + ++L A+      +++ KL QS +I +  DESTD ++   I +          P++  L+           HE    TG  +   +   L+    ++V +L+GF SDGAS M G N G   +L ++ PHLI  HC+AHR +L  S     V       + +T +  Y S+SS R+  L  L E +    +  +    +R+LS   AV A+ +
Sbjct:   38 VLKCIKTVLWLAQENIPLNKFESIFELFRELD---VPDLEPLRLNKRVNYESYYTSTEILGAISCVIDNEINVKLAQSPYITVLADESTDLANKKRITLNARIVNGTSEPEIVFLS----------DHEYEDGTGIGLATVILQELQRRD-ISVDRLIGFGSDGASVMSGGNKGVKGILLQKQPHLIHIHCMAHRLALCTSKAADLVPAIKCYQQWLTSLYYYFSQSSSREQELHKLQEILESPTLKYKEIHAVRWLSVYQAVEAIYR 291          
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A1V9YIA3_9STRA (DUF4371 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIA3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 9.720e-13
Identity = 73/232 (31.47%), Postives = 110/232 (47.41%), Query Frame = 1
Query:  133 TYENDVGAWQLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEAT---PGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLSRGTAVAALVKGYPVSLVFLK 819
            TY  +  A +++       L      ++ +++  + +DESTD + S N+ M++ +         MLAL            V  A G    K + DV+ AT     L +  L+GFASDGAS M+G+  G AT L K  P ++++HC AHR SLA       +D    A   +  +  YLSKS  R+   K LAE  G + + P      R+LSRG  +A   + +P   + LK
Sbjct:  160 TYTTNTSAGEMVAVCRTSVLAATLAAVRLAKYFSVMVDESTDIASSKNLIMMLRFVHGATVATRMLAL------------VELADGTA--KTIVDVILATLEKHDLDIANLVGFASDGASVMIGRIKGVATWLEKLAPRVVASHCCAHRLSLATEDAEGPLDEAAIA--CIMTVYKYLSKSEPRR---KQLAE-AGTRTLKPLQGAVTRWLSRGHILANAFENFPALCIVLK 371          
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A8H3L5C8_9GLOM (Zinc finger protein 862-like n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3L5C8_9GLOM)

HSP 1 Score: 76.3 bits (186), Expect = 3.420e-12
Identity = 58/208 (27.88%), Postives = 106/208 (50.96%), Query Frame = 1
Query:  136 YENDVGAWQLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLS 759
            YEN+V   ++L A+     + +  +L ++    + +DESTD S   ++ + V Y +  + +V  L L  + + D+ T          I + + D+ +   GLT  KL+ FASDG S M+G++   A+ + + N  L  THC+A+R +LA +S    +D    A+ ++  +  + S SS R   L+   E +G   +  +   ++R+LS
Sbjct:   13 YENNVSGHEILSAISILIEETIWNELNEAIAFDIMVDESTDISSKPHLIIYVKYCLHGKIKVHFLKLLQLKSKDSKT----------IFEVIIDLFDKK-GLT-NKLISFASDGVSVMLGRSTEVASRIKERNECLFITHCIAYRLALACNSAEKKMDFCKHAEHIIKSVYNFFSNSSKRVDILRKYQEILGHPILKIKQIYEVRWLS 208          
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: UPI001C19C353 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19C353)

HSP 1 Score: 79.7 bits (195), Expect = 7.910e-12
Identity = 69/273 (25.27%), Postives = 125/273 (45.79%), Query Frame = 1
Query:   13 HVVTLMKIAAHVAQHELPVSTFASHVELVRDCEGNTFPDKT--YENDVGAWQLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRP-QVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPH-LISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLSRGTAVAALVKGYPVSLVFLK 819
            H++ +M+    +A+  LP+    S VEL+++       + T  Y N +   + L+A+ +   +++ ++L      G+ IDESTD + + ++ +   Y       +   L + P+ + +A          E I K + D+ E    L+  KL+ FASDGAS M+GKN G A  L++   + LI  HCV HR +LA       +    E + +V +   Y   S      L+ +   + +  +  +   +IR+L+   A+  +    P  L   K
Sbjct:  131 HIIGIMRAVYFLAKKNLPLKLLPSIVELIKESNSPNLLNGTITYTNHISGHEFLEAISDTIKEEIWDELSNVTAFGVMIDESTDITTTKHLDIYASYVTKKGILKTRFLCIVPLTSCNA----------EGITKVLVDIFEKRKILS--KLVAFASDGASVMLGKNEGVAAKLSRICTYPLIVNHCVTHRLALACKDAKKELRFYEEIESLVRKFYNYFKNSCSHIQQLQEIQSLLDDPILKIKKLYEIRWLAWYDAIKNICNSIPALLRIFK 391          
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A8C5FLG9_GADMO (Uncharacterized protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5FLG9_GADMO)

HSP 1 Score: 77.0 bits (188), Expect = 2.750e-11
Identity = 60/218 (27.52%), Postives = 106/218 (48.62%), Query Frame = 1
Query:  166 LQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLSRGTAVAALVKGYPVSLVFLK 819
            +QA+ E  ++ L E+++ S +  +Q+DE+TD +D +N+ + V YE +       L  + + T         R T E I + V  + + T GL   K +G  +DGA  M G++ G    + +  P +  THC  HR +LA     + +   L  D  V  +N ++    +       L ++MG +HV      ++R+LSRG  ++ L + +    VFL+
Sbjct:   28 IQAMSENVIQTLVERIKDSPYFSIQLDETTDVADLANLLVFVRYEYEKATHEDFLFCQSLQT---------RTTAEHIFQLVNALFQET-GLDWKKCVGVCTDGARAMTGRHSGVVARIREVAPDVQWTHCSIHREALAVKRMPAELKAVL--DTAVKAVN-FIKSRPMHARLFHVLCDEMGSEHVQLLLHTEVRWLSRGKVLSRLFELHREVQVFLQ 232          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z6QM80_9GLOM9.360e-2030.57Uncharacterized protein n=7 Tax=Rhizophagus clarus... [more]
A0A8H3QK06_9GLOM1.530e-1929.96Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
A0A7D9HI41_PARCT8.970e-1531.25Zinc finger 862-like n=3 Tax=Paramuricea clavata T... [more]
A0A7D9I064_PARCT2.750e-1430.83Zinc finger 862-like n=2 Tax=Paramuricea clavata T... [more]
A0A7D9JHE5_PARCT2.480e-1331.39Zinc finger 862-like n=1 Tax=Paramuricea clavata T... [more]
UPI001E1E07292.540e-1327.99zinc finger protein 862-like n=1 Tax=Mercenaria me... [more]
A0A1V9YIA3_9STRA9.720e-1331.47DUF4371 domain-containing protein n=1 Tax=Achlya h... [more]
A0A8H3L5C8_9GLOM3.420e-1227.88Zinc finger protein 862-like n=2 Tax=Rhizophagus c... [more]
UPI001C19C3537.910e-1225.27Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A8C5FLG9_GADMO2.750e-1127.52Uncharacterized protein n=1 Tax=Gadus morhua TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73184contigH-elongata_contig73184:240..2965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score96.3
Seed ortholog evalue4.8e-17
Seed eggNOG ortholog10224.XP_006822498.1
EggNOG free text desc.Domain of unknown function (DUF4371)
EggNOG OGs2CNH6@1,2QW9Y@2759,39UZV@33154,3BFP8@33208,3DCTS@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1682
Cds size1653
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.5821886-UTR-H-elongata_contig73184:239..2661622931133.5821886-UTR-H-elongata_contig73184:239..266Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73184 240..266 +
1691679712.0093575-UTR-H-elongata_contig73184:239..2661691679712.0093575-UTR-H-elongata_contig73184:239..266Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73184 240..266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.5992246-CDS-H-elongata_contig73184:266..5391622931133.5992246-CDS-H-elongata_contig73184:266..539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73184 267..539 +
1691679712.0338442-CDS-H-elongata_contig73184:266..5391691679712.0338442-CDS-H-elongata_contig73184:266..539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73184 267..539 +
1622931133.6182845-CDS-H-elongata_contig73184:753..8581622931133.6182845-CDS-H-elongata_contig73184:753..858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73184 754..858 +
1691679712.0489864-CDS-H-elongata_contig73184:753..8581691679712.0489864-CDS-H-elongata_contig73184:753..858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73184 754..858 +
1622931133.6329656-CDS-H-elongata_contig73184:1039..12761622931133.6329656-CDS-H-elongata_contig73184:1039..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73184 1040..1276 +
1691679712.0748699-CDS-H-elongata_contig73184:1039..12761691679712.0748699-CDS-H-elongata_contig73184:1039..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73184 1040..1276 +
1622931133.6492825-CDS-H-elongata_contig73184:1453..18561622931133.6492825-CDS-H-elongata_contig73184:1453..1856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73184 1454..1856 +
1691679712.0912774-CDS-H-elongata_contig73184:1453..18561691679712.0912774-CDS-H-elongata_contig73184:1453..1856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73184 1454..1856 +
1622931133.6906853-CDS-H-elongata_contig73184:2056..23761622931133.6906853-CDS-H-elongata_contig73184:2056..2376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73184 2057..2376 +
1691679712.102079-CDS-H-elongata_contig73184:2056..23761691679712.102079-CDS-H-elongata_contig73184:2056..2376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73184 2057..2376 +
1622931133.709641-CDS-H-elongata_contig73184:2650..29651622931133.709641-CDS-H-elongata_contig73184:2650..2965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73184 2651..2965 +
1691679712.110444-CDS-H-elongata_contig73184:2650..29651691679712.110444-CDS-H-elongata_contig73184:2650..2965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73184 2651..2965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73184.14996.1prot_H-elongata_contig73184.14996.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73184 267..2965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73184.14996.1

>prot_H-elongata_contig73184.14996.1 ID=prot_H-elongata_contig73184.14996.1|Name=mRNA_H-elongata_contig73184.14996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=551bp
MKIAAHVAQHELPVSTFASHVELVRDCEGNTFPDKTYENDVGAWQLLQAL
EEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAM
LALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDG
ASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEAD
KVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLSRGTAVA
ALVKGYPVSLVFLKGEGGGCLVKKNNARLTEEIRALEAEAGEKRHQLGGL
AQNKATMERVRDVLLAPYGPNPSQEQMIVMGTVLQTMNPGIEKIATDISS
LQQTITSLEQQIAGKKLLFEVPPGGADKGTDTAASLYERMTSFRFMGILY
VLKDFLEVLNNLNKLFQFRLMTYDGLMTDLERAKRTIRVTFANGVKSFEY
KNLLRLLGGAGGEAGLRQRLSQEPQGFEVPFSGDPDVKIRISAADLEAVE
TAAKELGVKALDELTARFPDVGILKKCAVLDPQLIPQAEDEICEYGVEEI
E
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mRNA from alignment at H-elongata_contig73184:240..2965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73184.14996.1 ID=mRNA_H-elongata_contig73184.14996.1|Name=mRNA_H-elongata_contig73184.14996.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2726bp|location=Sequence derived from alignment at H-elongata_contig73184:240..2965+ (Himanthalia elongata Himel1 dioecious)
AAGGCACGACAGCATGTTGTCACTCTGATGAAGATCGCTGCGCATGTTGC GCAGCACGAGCTTCCCGTCTCGACGTTTGCTTCCCATGTTGAGCTCGTAC GGGATTGCGAGGGGAACACCTTCCCGGACAAGACGTATGAAAACGATGTG GGAGCCTGGCAGCTGTTGCAAGCTCTTGAGGAGCAATATCTGAAGCAACT TCACGAAAAGCTCCAGCAGTCAGAGTTCATCGGCCTACAGATTGACGAGA GTACGGACCGCAGCGACTCAAGCAACATCTTCATGGTCGTCCACTATGAG GTACTGGAGTGTTACAGCACACAACCCACGCGATACATTATTTGCCGATT TCCGAAATGGTATATTTTTGGATCCCAGATCCCAGAAAGTTCGCATGCGC CCCCTTAATCAATTCCGTCTAATTGCATGTTTCCGCCGCCCGCGTGTTTT TCATTTGTGCATCTGGAATCTGAAATGTGGCTCCATCGCTCCATCAACAT CAAACCACGAATAGGTGGATTTCCGCCCCCAAGTTGCGATGTTGGCGCTG AAGCCGGTGCACACGATCGACGCGAACACGCACGAGGTCCACCGTGCCAC GGGGGAGCGAATCAAGAAGGTCAGCTTTTACCATCTTACTGTAGCCCATT GTCTAGCTTCCACACTCCACACTCCACGCCTAGTTTTTTCCGAAGGGCTC GCAGGCTCGGATAGCTTTTGAGAATGTGCGAAGTCCAGTCGAAGTTTCAA TGGCATTTACGATCAACGGCCCGGATCTCTTTGTTACACCCGCGAAACAG GCGGTATGTGATGTACTGGAGGCTACTCCTGGCCTGACCGTTGGCAAGCT GATGGGCTTTGCCAGCGATGGAGCGTCGTGCATGGTGGGCAAAAACGTTG GGACAGCAACCCTTCTAGCGAAAGAAAACCCTCACCTTATCAGCACGCAC TGCGTGGCTCACAGAGGATCTCTCGCCGCCAGTTCTACCTGCTCTGCCGT GGACCTGACTCTCGAGGCGGACAAAGTGGTTACTGAGGTACGACGCGGTC TTGATCTTAATCTGGGGGCGGTGTGTGTCCTAGCCGCATGAACCAGAAAA CCGCGGAGCTGTGTAGTGGATAGTGGGTACGTGGCACCTGTACTGATCGC TTCCGTTGTTTGTGCTGTGTTTTTTGTTGTGTGTGTGGTTCTTTTTTTTT GCCTTCGTCACCAGATGAATGGCTACCTCAGCAAGAGTTCTCTGAGGAAA GCTACACTCAAGAATTTAGCGGAAAAGATGGGAGAGAAACATGTTTCCCC TCAGGCGTTTATCAAAATTCGTTTCTTGAGCCGTGGAACCGCAGTGGCTG CTCTAGTGAAGGGCTACCCGGTTTCGCTGGTATTCTTGAAAGGAGAAGGG GGGGGGTGCCTTGTGAAAAAAAATAACGCACGTCTCACGGAGGAAATTCG TGCACTGGAGGCAGAGGCAGGGGAGAAAAGACACCAGTTGGGTGGTTTGG CGCAGAACAAGGCGACGATGGAGCGTGTCAGGGACGTTCTGCTGGCCCCA TACGGACCTAACCCTTCTCAAGAGCAGATGATTGTGATGGGCACCGTGCT TCAAACCATGAACCCAGGTAAAGCGAAAGAGTATGAACCCTAGTGTCGCT GACTCCTTCTAGTATTGTTTTCCCTGGCTGCTGAGCAGCAGTCTGGTGTA CGGTTCAAAATCGACGATTATCGACGATTTAAGCACAGAAAAGCGCAACC AGGACGCCCGTCTCACGTCTCACATATCATATGCTTCAACCGGCCACCTG TTTCCTGCCGTCTGCAGGGATAGAGAAGATCGCGACCGACATTTCCAGCC TGCAGCAGACGATAACCTCTCTAGAGCAGCAAATTGCGGGGAAGAAACTT CTATTCGAGGTACCTCCAGGCGGTGCGGACAAGGGCACCGACACTGCCGC AAGCCTCTATGAGCGCATGACCTCCTTCAGATTCATGGGCATCCTGTACG TGCTCAAAGATTTTTTGGAAGTACTCAACAACCTCAACAAGCTTTTCCAG TTCCGCCTGATGACATACGACGGACTCATGACGGATTTGGAGCGTGCGAA GCGGACCATCCGCGTTACGTTTGCCAATGGCGTCAAGGTGATGTTTTGTG CAAATAGAGATGGGTGTTTTCTAGGTTGAATTACCGGCTCGACTACATGT AGAGAACACGAGGACACCAACCCTGAAGGTGTTTCGAGTTTCAAGTTGGG TTTGCCTGGACGAGCGCTGGGTTGTTTTGAAGTGTGTTGCTCCTGAGAAA AACGTTTAGACGTTCAGCAGTTGCAATTGCTCATTCATGCTGCCCTCTCC CGTCTGCCCATTTTCGTTGCGTTTTTCCTTGTCTCAATCCACAACAAAAT GTTTCTGGCAGTCCTTCGAGTACAAGAACCTCCTTCGTCTTCTCGGAGGG GCAGGGGGAGAAGCGGGACTCCGCCAGAGACTGAGCCAGGAGCCTCAGGG CTTCGAGGTGCCGTTCTCCGGCGACCCCGACGTTAAAATACGCATATCGG CAGCCGACCTCGAAGCCGTGGAAACGGCGGCAAAGGAGTTGGGTGTGAAG GCGCTGGACGAGCTTACCGCGCGGTTCCCTGATGTGGGAATCTTGAAGAA GTGCGCGGTGCTTGACCCGCAGCTGATTCCTCAGGCTGAGGACGAAATCT GTGAGTACGGCGTCGAGGAAATAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig73184:240..2965+

>mRNA_H-elongata_contig73184.14996.1 ID=mRNA_H-elongata_contig73184.14996.1|Name=mRNA_H-elongata_contig73184.14996.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3306bp|location=Sequence derived from alignment at H-elongata_contig73184:240..2965+ (Himanthalia elongata Himel1 dioecious)
ATGAAGATCGCTGCGCATGTTGCGCAGCACGAGCTTCCCGTCTCGACGTT
TGCTTCCCATGTTGAGCTCGTACGGGATTGCGAGGGGAACACCTTCCCGG
ACAAGACGTATGAAAACGATGTGGGAGCCTGGCAGCTGTTGCAAGCTCTT
GAGGAGCAATATCTGAAGCAACTTCACGAAAAGCTCCAGCAGTCAGAGTT
CATCGGCCTACAGATTGACGAGAGTACGGACCGCAGCGACTCAAGCAACA
TCTTCATGGTCGTCCACTATGAGATGAAGATCGCTGCGCATGTTGCGCAG
CACGAGCTTCCCGTCTCGACGTTTGCTTCCCATGTTGAGCTCGTACGGGA
TTGCGAGGGGAACACCTTCCCGGACAAGACGTATGAAAACGATGTGGGAG
CCTGGCAGCTGTTGCAAGCTCTTGAGGAGCAATATCTGAAGCAACTTCAC
GAAAAGCTCCAGCAGTCAGAGTTCATCGGCCTACAGATTGACGAGAGTAC
GGACCGCAGCGACTCAAGCAACATCTTCATGGTCGTCCACTATGAGGTGG
ATTTCCGCCCCCAAGTTGCGATGTTGGCGCTGAAGCCGGTGCACACGATC
GACGCGAACACGCACGAGGTCCACCGTGCCACGGGGGAGCGAATCAAGAA
GGTGGATTTCCGCCCCCAAGTTGCGATGTTGGCGCTGAAGCCGGTGCACA
CGATCGACGCGAACACGCACGAGGTCCACCGTGCCACGGGGGAGCGAATC
AAGAAGGCGGTATGTGATGTACTGGAGGCTACTCCTGGCCTGACCGTTGG
CAAGCTGATGGGCTTTGCCAGCGATGGAGCGTCGTGCATGGTGGGCAAAA
ACGTTGGGACAGCAACCCTTCTAGCGAAAGAAAACCCTCACCTTATCAGC
ACGCACTGCGTGGCTCACAGAGGATCTCTCGCCGCCAGTTCTACCTGCTC
TGCCGTGGACCTGACTCTCGAGGCGGACAAAGTGGTTACTGAGGCGGTAT
GTGATGTACTGGAGGCTACTCCTGGCCTGACCGTTGGCAAGCTGATGGGC
TTTGCCAGCGATGGAGCGTCGTGCATGGTGGGCAAAAACGTTGGGACAGC
AACCCTTCTAGCGAAAGAAAACCCTCACCTTATCAGCACGCACTGCGTGG
CTCACAGAGGATCTCTCGCCGCCAGTTCTACCTGCTCTGCCGTGGACCTG
ACTCTCGAGGCGGACAAAGTGGTTACTGAGATGAATGGCTACCTCAGCAA
GAGTTCTCTGAGGAAAGCTACACTCAAGAATTTAGCGGAAAAGATGGGAG
AGAAACATGTTTCCCCTCAGGCGTTTATCAAAATTCGTTTCTTGAGCCGT
GGAACCGCAGTGGCTGCTCTAGTGAAGGGCTACCCGGTTTCGCTGGTATT
CTTGAAAGGAGAAGGGGGGGGGTGCCTTGTGAAAAAAAATAACGCACGTC
TCACGGAGGAAATTCGTGCACTGGAGGCAGAGGCAGGGGAGAAAAGACAC
CAGTTGGGTGGTTTGGCGCAGAACAAGGCGACGATGGAGCGTGTCAGGGA
CGTTCTGCTGGCCCCATACGGACCTAACCCTTCTCAAGAGCAGATGATTG
TGATGGGCACCGTGCTTCAAACCATGAACCCAGATGAATGGCTACCTCAG
CAAGAGTTCTCTGAGGAAAGCTACACTCAAGAATTTAGCGGAAAAGATGG
GAGAGAAACATGTTTCCCCTCAGGCGTTTATCAAAATTCGTTTCTTGAGC
CGTGGAACCGCAGTGGCTGCTCTAGTGAAGGGCTACCCGGTTTCGCTGGT
ATTCTTGAAAGGAGAAGGGGGGGGGTGCCTTGTGAAAAAAAATAACGCAC
GTCTCACGGAGGAAATTCGTGCACTGGAGGCAGAGGCAGGGGAGAAAAGA
CACCAGTTGGGTGGTTTGGCGCAGAACAAGGCGACGATGGAGCGTGTCAG
GGACGTTCTGCTGGCCCCATACGGACCTAACCCTTCTCAAGAGCAGATGA
TTGTGATGGGCACCGTGCTTCAAACCATGAACCCAGGGATAGAGAAGATC
GCGACCGACATTTCCAGCCTGCAGCAGACGATAACCTCTCTAGAGCAGCA
AATTGCGGGGAAGAAACTTCTATTCGAGGTACCTCCAGGCGGTGCGGACA
AGGGCACCGACACTGCCGCAAGCCTCTATGAGCGCATGACCTCCTTCAGA
TTCATGGGCATCCTGTACGTGCTCAAAGATTTTTTGGAAGTACTCAACAA
CCTCAACAAGCTTTTCCAGTTCCGCCTGATGACATACGACGGACTCATGA
CGGATTTGGAGCGTGCGAAGCGGACCATCCGCGTTACGTTTGCCAATGGC
GTCAAGGGATAGAGAAGATCGCGACCGACATTTCCAGCCTGCAGCAGACG
ATAACCTCTCTAGAGCAGCAAATTGCGGGGAAGAAACTTCTATTCGAGGT
ACCTCCAGGCGGTGCGGACAAGGGCACCGACACTGCCGCAAGCCTCTATG
AGCGCATGACCTCCTTCAGATTCATGGGCATCCTGTACGTGCTCAAAGAT
TTTTTGGAAGTACTCAACAACCTCAACAAGCTTTTCCAGTTCCGCCTGAT
GACATACGACGGACTCATGACGGATTTGGAGCGTGCGAAGCGGACCATCC
GCGTTACGTTTGCCAATGGCGTCAAGTCCTTCGAGTACAAGAACCTCCTT
CGTCTTCTCGGAGGGGCAGGGGGAGAAGCGGGACTCCGCCAGAGACTGAG
CCAGGAGCCTCAGGGCTTCGAGGTGCCGTTCTCCGGCGACCCCGACGTTA
AAATACGCATATCGGCAGCCGACCTCGAAGCCGTGGAAACGGCGGCAAAG
GAGTTGGGTGTGAAGGCGCTGGACGAGCTTACCGCGCGGTTCCCTGATGT
GGGAATCTTGAAGAAGTGCGCGGTGCTTGACCCGCAGCTGATTCCTCAGG
CTGAGGACGAAATCTGTGAGTACGGCGTCGAGGAAATAGAGTCCTTCGAG
TACAAGAACCTCCTTCGTCTTCTCGGAGGGGCAGGGGGAGAAGCGGGACT
CCGCCAGAGACTGAGCCAGGAGCCTCAGGGCTTCGAGGTGCCGTTCTCCG
GCGACCCCGACGTTAAAATACGCATATCGGCAGCCGACCTCGAAGCCGTG
GAAACGGCGGCAAAGGAGTTGGGTGTGAAGGCGCTGGACGAGCTTACCGC
GCGGTTCCCTGATGTGGGAATCTTGAAGAAGTGCGCGGTGCTTGACCCGC
AGCTGATTCCTCAGGCTGAGGACGAAATCTGTGAGTACGGCGTCGAGGAA
ATAGAG
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