mRNA_H-elongata_contig73184.14996.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A2Z6QM80_9GLOM (Uncharacterized protein n=7 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QM80_9GLOM) HSP 1 Score: 104 bits (259), Expect = 9.360e-20 Identity = 81/265 (30.57%), Postives = 138/265 (52.08%), Query Frame = 1
Query: 1 KARQHVVTLMKIAAHVAQHELPVSTFASHVELVR--DCEGNTFPDKT--YENDVGAWQLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLSRGTAVAAL 783
KA+ H+ +LMKI +A++++ ++ + V+L R C T YEN+V ++L A+ + + +L ++ G+ +DESTD S ++ + V Y + + +V L L + + D+ T I +A+ D+ + GLT KLM FASDGAS M+G++ G A+ + + N L THC+AHR +LA +S VD A+ ++ + + S SS R L+ E +G + + ++R+LS AV L
Sbjct: 129 KAQNHIGSLMKIIFWLAENDISLNKLSEVVKLCRILGCPQLISASSTINYENNVSGREILSAISISIEETIWNELNEAIAFGIMVDESTDISSEPHLIIYVKYCLHGKIKVRFLKLLQLKSKDSKT----------IFEAIIDLFDKK-GLT-NKLMSFASDGASVMLGRSTGVASRIKERNECLFITHCIAHRLALACNSAEKKVDFCKHAEHIIKSVYNFFSNSSKRVDILRKYQEILGHPILKIKQIYEVRWLSWYEAVKNL 381
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A8H3QK06_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3QK06_9GLOM) HSP 1 Score: 102 bits (255), Expect = 1.530e-19 Identity = 77/257 (29.96%), Postives = 134/257 (52.14%), Query Frame = 1
Query: 1 KARQHVVTLMKIAAHVAQHELPVSTFASHVELVR--DCEGNTFPDKT--YENDVGAWQLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLS 759
KA+ H+ +LMKI +A++++ ++ + ++L R C T YEN+V ++L A+ K + +L ++ G+ +DESTD S + + V Y + + +V L L + + D+ T I +A+ D+ + GLT KLM FASDGAS M+G++ G A+ + + N +L HC+AHR +LA +S VD A+ ++ + + S SS R L+ E +G + + ++R+LS
Sbjct: 129 KAQNHIGSLMKIIFWLAENDISLNKLSEVIKLCRILGCPQLISASSTINYENNVSGREILSAISILIEKTIWNELNEAIAFGIMVDESTDISSEPHFIIYVKYCLHRKIKVRFLKLLQLKSKDSKT----------IFEAIIDLFDKK-GLT-NKLMSFASDGASVMLGRSTGVASRIKERNEYLFIIHCIAHRLALACNSAEKKVDFCKHAEHIIKSVYNFFSNSSKRVDILRKYQEILGHPILKIKQIYEVRWLS 373
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A7D9HI41_PARCT (Zinc finger 862-like n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HI41_PARCT) HSP 1 Score: 89.0 bits (219), Expect = 8.970e-15 Identity = 75/240 (31.25%), Postives = 108/240 (45.00%), Query Frame = 1
Query: 160 QLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGE------------------KHVSPQAFIKIRFLSRGTAVAALVKGYPVSLVFLKGE 825
+LL +L E +L+++ L S FIGL IDESTDRS +I VV Y ++ LK + T A E +KK + D + V KL G DGAS M G LL +ENP LI HC+ HR LA S + +++ + +++ S R KNLA+ +G K++ + IR+LS G AV A++ Y L+ L+ E
Sbjct: 343 ELLHSLSEVFLRKMLNHLNSSPFIGLGIDESTDRSQEKHIAAVVRYVDSNETKIKTSFLK----LSVITSGTAPAIVEAVKKILGDF-----SIPVNKLTGLGIDGASVMASDMNGVLGLLQRENPFLIGIHCINHRLHLAVSKAAKDIKNVNTLSTILSTIYQHVNNSPNRLQKFKNLADVLGAINHDNAPEEGNENIAPSLKYLKFKRIFDIRWLSVGEAVKAVIHNYQPLLILLEEE 573
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A7D9I064_PARCT (Zinc finger 862-like n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I064_PARCT) HSP 1 Score: 86.7 bits (213), Expect = 2.750e-14 Identity = 74/240 (30.83%), Postives = 107/240 (44.58%), Query Frame = 1
Query: 160 QLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGE------------------KHVSPQAFIKIRFLSRGTAVAALVKGYPVSLVFLKGE 825
+LL +L E + +++ L S FIGL IDESTDRS +I VV Y ++ LK + T A E +KK + D + V KL G DGAS M G LL +ENP LI HC+ HR LA S + +++ + +++ S R KNLA+ +G K++ + IR+LS G AV A++ Y L+ L+ E
Sbjct: 233 ELLHSLSEVFQRKMLNHLNSSPFIGLGIDESTDRSQEKHIAAVVRYVDSNETKIKTSFLK----LSVITSGTAPAIVEAVKKILGDF-----SIPVNKLTGLGIDGASVMASDMNGVLGLLQRENPFLIGIHCINHRLHLAVSKAAKDIKNVNTLSTILSTIYQHVNNSPNRLQKFKNLADVLGAINHDNAPEEGNENIAPSLKYLKFKRIFDIRWLSVGEAVKAVIHNYQPLLILLEEE 463
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A7D9JHE5_PARCT (Zinc finger 862-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JHE5_PARCT) HSP 1 Score: 81.6 bits (200), Expect = 2.480e-13 Identity = 70/223 (31.39%), Postives = 97/223 (43.50%), Query Frame = 1
Query: 211 LQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGE------------------KHVSPQAFIKIRFLSRGTAVAALVKGYPVSLVFLKGE 825
L S FIGL IDESTDRS +I VV Y ++ LK + T A E +KK + D + V KL G DGAS M G LL +ENP LI HC+ HR LA S + +++ + +++ S R KNLA+ +G K++ + IR+LS G AV A++ Y L+ L+ E
Sbjct: 5 LNSSPFIGLGIDESTDRSQEKHIAAVVRYVDSNETKIKTSFLK----LSVITSGTAPAIVEAVKKILGDF-----SIPVNKLTGLGIDGASVMASDMNGVLGLLQRENPFLIGIHCINHRLHLAVSKAAKDIKNVNTLSTILSTIYQHVNNSPNRLQKFKNLADVLGAINHDNAPEEGNENIAPSLKYLKFKRIFDIRWLSVGEAVKAVIHNYQPLLILLEEE 218
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: UPI001E1E0729 (zinc finger protein 862-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0729) HSP 1 Score: 82.4 bits (202), Expect = 2.540e-13 Identity = 75/268 (27.99%), Postives = 123/268 (45.90%), Query Frame = 1
Query: 16 VVTLMKIAAHVAQHELPVSTFASHVELVRDCEGNTFPDK---------TYENDVGAWQLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHY-EVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLSRGTAVAALVK 789
V+ +K +AQ +P++ F S EL R+ + PD YE+ + ++L A+ +++ KL QS +I + DESTD ++ I + P++ L+ HE TG + + L+ ++V +L+GF SDGAS M G N G +L ++ PHLI HC+AHR +L S V + +T + Y S+SS R+ L L E + + + +R+LS AV A+ +
Sbjct: 38 VLKCIKTVLWLAQENIPLNKFESIFELFRELD---VPDLEPLRLNKRVNYESYYTSTEILGAISCVIDNEINVKLAQSPYITVLADESTDLANKKRITLNARIVNGTSEPEIVFLS----------DHEYEDGTGIGLATVILQELQRRD-ISVDRLIGFGSDGASVMSGGNKGVKGILLQKQPHLIHIHCMAHRLALCTSKAADLVPAIKCYQQWLTSLYYYFSQSSSREQELHKLQEILESPTLKYKEIHAVRWLSVYQAVEAIYR 291
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A1V9YIA3_9STRA (DUF4371 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIA3_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 9.720e-13 Identity = 73/232 (31.47%), Postives = 110/232 (47.41%), Query Frame = 1
Query: 133 TYENDVGAWQLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEAT---PGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLSRGTAVAALVKGYPVSLVFLK 819
TY + A +++ L ++ +++ + +DESTD + S N+ M++ + MLAL V A G K + DV+ AT L + L+GFASDGAS M+G+ G AT L K P ++++HC AHR SLA +D A + + YLSKS R+ K LAE G + + P R+LSRG +A + +P + LK
Sbjct: 160 TYTTNTSAGEMVAVCRTSVLAATLAAVRLAKYFSVMVDESTDIASSKNLIMMLRFVHGATVATRMLAL------------VELADGTA--KTIVDVILATLEKHDLDIANLVGFASDGASVMIGRIKGVATWLEKLAPRVVASHCCAHRLSLATEDAEGPLDEAAIA--CIMTVYKYLSKSEPRR---KQLAE-AGTRTLKPLQGAVTRWLSRGHILANAFENFPALCIVLK 371
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A8H3L5C8_9GLOM (Zinc finger protein 862-like n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3L5C8_9GLOM) HSP 1 Score: 76.3 bits (186), Expect = 3.420e-12 Identity = 58/208 (27.88%), Postives = 106/208 (50.96%), Query Frame = 1
Query: 136 YENDVGAWQLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLS 759
YEN+V ++L A+ + + +L ++ + +DESTD S ++ + V Y + + +V L L + + D+ T I + + D+ + GLT KL+ FASDG S M+G++ A+ + + N L THC+A+R +LA +S +D A+ ++ + + S SS R L+ E +G + + ++R+LS
Sbjct: 13 YENNVSGHEILSAISILIEETIWNELNEAIAFDIMVDESTDISSKPHLIIYVKYCLHGKIKVHFLKLLQLKSKDSKT----------IFEVIIDLFDKK-GLT-NKLISFASDGVSVMLGRSTEVASRIKERNECLFITHCIAYRLALACNSAEKKMDFCKHAEHIIKSVYNFFSNSSKRVDILRKYQEILGHPILKIKQIYEVRWLS 208
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: UPI001C19C353 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19C353) HSP 1 Score: 79.7 bits (195), Expect = 7.910e-12 Identity = 69/273 (25.27%), Postives = 125/273 (45.79%), Query Frame = 1
Query: 13 HVVTLMKIAAHVAQHELPVSTFASHVELVRDCEGNTFPDKT--YENDVGAWQLLQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRP-QVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPH-LISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLSRGTAVAALVKGYPVSLVFLK 819
H++ +M+ +A+ LP+ S VEL+++ + T Y N + + L+A+ + +++ ++L G+ IDESTD + + ++ + Y + L + P+ + +A E I K + D+ E L+ KL+ FASDGAS M+GKN G A L++ + LI HCV HR +LA + E + +V + Y S L+ + + + + + +IR+L+ A+ + P L K
Sbjct: 131 HIIGIMRAVYFLAKKNLPLKLLPSIVELIKESNSPNLLNGTITYTNHISGHEFLEAISDTIKEEIWDELSNVTAFGVMIDESTDITTTKHLDIYASYVTKKGILKTRFLCIVPLTSCNA----------EGITKVLVDIFEKRKILS--KLVAFASDGASVMLGKNEGVAAKLSRICTYPLIVNHCVTHRLALACKDAKKELRFYEEIESLVRKFYNYFKNSCSHIQQLQEIQSLLDDPILKIKKLYEIRWLAWYDAIKNICNSIPALLRIFK 391
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Match: A0A8C5FLG9_GADMO (Uncharacterized protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5FLG9_GADMO) HSP 1 Score: 77.0 bits (188), Expect = 2.750e-11 Identity = 60/218 (27.52%), Postives = 106/218 (48.62%), Query Frame = 1
Query: 166 LQALEEQYLKQLHEKLQQSEFIGLQIDESTDRSDSSNIFMVVHYEVDFRPQVAMLALKPVHTIDANTHEVHRATGERIKKAVCDVLEATPGLTVGKLMGFASDGASCMVGKNVGTATLLAKENPHLISTHCVAHRGSLAASSTCSAVDLTLEADKVVTEMNGYLSKSSLRKATLKNLAEKMGEKHVSPQAFIKIRFLSRGTAVAALVKGYPVSLVFLK 819
+QA+ E ++ L E+++ S + +Q+DE+TD +D +N+ + V YE + L + + T R T E I + V + + T GL K +G +DGA M G++ G + + P + THC HR +LA + + L D V +N ++ + L ++MG +HV ++R+LSRG ++ L + + VFL+
Sbjct: 28 IQAMSENVIQTLVERIKDSPYFSIQLDETTDVADLANLLVFVRYEYEKATHEDFLFCQSLQT---------RTTAEHIFQLVNALFQET-GLDWKKCVGVCTDGARAMTGRHSGVVARIREVAPDVQWTHCSIHREALAVKRMPAELKAVL--DTAVKAVN-FIKSRPMHARLFHVLCDEMGSEHVQLLLHTEVRWLSRGKVLSRLFELHREVQVFLQ 232 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73184.14996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73184.14996.1 >prot_H-elongata_contig73184.14996.1 ID=prot_H-elongata_contig73184.14996.1|Name=mRNA_H-elongata_contig73184.14996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=551bp MKIAAHVAQHELPVSTFASHVELVRDCEGNTFPDKTYENDVGAWQLLQALback to top mRNA from alignment at H-elongata_contig73184:240..2965+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73184.14996.1 ID=mRNA_H-elongata_contig73184.14996.1|Name=mRNA_H-elongata_contig73184.14996.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2726bp|location=Sequence derived from alignment at H-elongata_contig73184:240..2965+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73184:240..2965+ >mRNA_H-elongata_contig73184.14996.1 ID=mRNA_H-elongata_contig73184.14996.1|Name=mRNA_H-elongata_contig73184.14996.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3306bp|location=Sequence derived from alignment at H-elongata_contig73184:240..2965+ (Himanthalia elongata Himel1 dioecious)back to top |