mRNA_H-elongata_contig73145.14992.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI) HSP 1 Score: 223 bits (567), Expect = 5.600e-65 Identity = 105/122 (86.07%), Postives = 112/122 (91.80%), Query Frame = 1
Query: 1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGD 366
QMIGRAGRPQFDDHAVACILVHEPKKNF+KKFLYEPFPVES+LP +LHNHLSAECAGGAIR RRDAVDYLTWTF+FVRLLANPS+YGLE TEGVQ HLL LV++TL DL AGCIELGGD
Sbjct: 1824 QMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGVQEHLLGLVESTLADLEDAGCIELGGD 1945
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A7S2BB24_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BB24_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.770e-49 Identity = 77/122 (63.11%), Postives = 97/122 (79.51%), Query Frame = 1
Query: 1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGD 366
QM+GRAGRPQFDD ++C+ V + KKNFYKKFLYEPFPVES L + LHNH++AE AGG I+ ++DAV+YLTWT+FF RLL NP+YY L T+GVQ +LL L+DTT+ DL AGC+E+ D
Sbjct: 35 QMMGRAGRPQFDDKGISCVFVEQSKKNFYKKFLYEPFPVESSLKDVLHNHMNAEVAGGTIKNKQDAVEYLTWTYFFRRLLVNPAYYHLHESSTDGVQKYLLALIDTTMDDLENAGCVEIEDD 156
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A7S1T1Q3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T1Q3_9CHLO) HSP 1 Score: 166 bits (419), Expect = 5.090e-49 Identity = 77/123 (62.60%), Postives = 91/123 (73.98%), Query Frame = 1
Query: 1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGDG 369
QM+GRAGRPQ+D H VA I+VHEPKKNFYKKFLYEPFPVES LPE L +H++AE GG +R +DA+DYLTWTFF+ RLL NPSYY LE + E V L +VD L AGC+E G+G
Sbjct: 19 QMMGRAGRPQYDKHGVAVIMVHEPKKNFYKKFLYEPFPVESSLPEQLPDHINAEVVGGTVRSMQDALDYLTWTFFYRRLLQNPSYYDLESTEAESVNGFLSTMVDDVFAALEEAGCVETDGEG 141
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: W7TU71_9STRA (Activating signal cointegrator 1 complex subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU71_9STRA) HSP 1 Score: 168 bits (426), Expect = 5.480e-46 Identity = 78/125 (62.40%), Postives = 97/125 (77.60%), Query Frame = 1
Query: 1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGDGMG 375
QM+GRAGRPQFD VACILVHEPKKNF KKFLYEPFPVES L + LHNHL+AE +GG+++ + A++YLTWTFFF RL+ NP+YY LE E VQ++LL+L++ +DL AGCIE+ D G
Sbjct: 1741 QMMGRAGRPQFDTRGVACILVHEPKKNFIKKFLYEPFPVESSLKDVLHNHLNAEVSGGSVQNKEQAMEYLTWTFFFRRLVMNPTYYSLEETAPEAVQSYLLELINGVFEDLEDAGCIEIDEDEFG 1865
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A7S0PZ95_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PZ95_9EUKA) HSP 1 Score: 164 bits (415), Expect = 1.320e-45 Identity = 75/124 (60.48%), Postives = 92/124 (74.19%), Query Frame = 1
Query: 1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGDGM 372
QM+GRAGRPQFD+ VACILVHEPKK FYKKFLYEPFPVES+L LH+H +AE G IR ++DAVD+LTWT+F+ RL NP+YY EG A L +LV+ T+ DL AGC+E+ DG+
Sbjct: 228 QMMGRAGRPQFDERGVACILVHEPKKTFYKKFLYEPFPVESQLQNQLHDHFNAEVVTGTIRSKQDAVDFLTWTYFYRRLGKNPAYYSQPDASEEGTAAFLSELVEATISDLENAGCVEVADDGV 351
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: UPI00053A131A (DExH-box ATP-dependent RNA helicase DExH14-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A131A) HSP 1 Score: 156 bits (395), Expect = 2.750e-45 Identity = 74/119 (62.18%), Postives = 88/119 (73.95%), Query Frame = 1
Query: 1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIEL 357
QM+GRAGRPQFD H A ILVHEPKK+FYKKFLYEPFPVES L E LH+H +AE G I + DAV YLTWT+ F RL+ANP+YYGLEG E V ++L LV T DL +GC+++
Sbjct: 52 QMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGLEGTQDETVCSYLSRLVQNTFDDLEDSGCLKV 170
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A250WZI2_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WZI2_9CHLO) HSP 1 Score: 166 bits (420), Expect = 3.530e-45 Identity = 79/122 (64.75%), Postives = 90/122 (73.77%), Query Frame = 1
Query: 1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGD 366
QM+GRAGRPQ+D H VA I+VHEPKK FYK+FLYEPFPVES LP L NH +AE G I CR+DAVDYLTWTFFF RLL NPSYY LE E + +L +LV+ L L AGC+ LGGD
Sbjct: 1761 QMMGRAGRPQYDKHGVAVIMVHEPKKQFYKRFLYEPFPVESSLPGQLANHFNAEVVAGTITCRQDAVDYLTWTFFFRRLLQNPSYYDLEETTAEALNVYLTELVEGALVALEEAGCVVLGGD 1882
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A7S0NSC9_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NSC9_9EUKA) HSP 1 Score: 165 bits (418), Expect = 6.430e-45 Identity = 78/125 (62.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query: 1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGDGMG 375
QM+GRAGRPQFDD +A ILVHEPKK FYKKFLYEPFPVES+L E LH+H +AE G+IR ++DAVD+LTWT+F+ RL NPSYY EG A L LV+TT+ DL AGC+E+ DG+G
Sbjct: 879 QMMGRAGRPQFDDTGIAVILVHEPKKTFYKKFLYEPFPVESQLQEQLHDHFNAEVVSGSIRSKQDAVDFLTWTYFYRRLGKNPSYYHQPDASEEGTAAFLSALVETTVADLENAGCLEVADDGVG 1003
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A7S3UTV5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTV5_HETAK) HSP 1 Score: 163 bits (413), Expect = 6.870e-45 Identity = 78/114 (68.42%), Postives = 91/114 (79.82%), Query Frame = 1
Query: 1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGA 342
QM+GRAGRPQFDD AVA +LVHEPKK FY+KFLY PFPVES L E LHNH+SAE AGG+I+ ++DAV+YLTWT+FF RL+ NP+YY LE EGVQ +LL LVD L DL A
Sbjct: 527 QMMGRAGRPQFDDTAVAAVLVHEPKKIFYQKFLYSPFPVESSLREYLHNHISAEVAGGSIKSKQDAVEYLTWTYFFRRLVMNPTYYHLEDPSPEGVQDYLLSLVDAVLTDLEAA 640
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A8J4D9Y5_9CHLO (Uncharacterized protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D9Y5_9CHLO) HSP 1 Score: 165 bits (417), Expect = 8.960e-45 Identity = 80/125 (64.00%), Postives = 92/125 (73.60%), Query Frame = 1
Query: 1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGDGMG 375
QM+GRAGRPQFD H VA ILVHEPKK FYK+FLYEPFPVES L + + +H +AE G I R+DAVDYLTWT+FF RLL NPSYY LE D++ V A++ LV T L L AGCI LGGD G
Sbjct: 1792 QMMGRAGRPQFDRHGVAVILVHEPKKQFYKRFLYEPFPVESSLQDQVADHFNAEVVAGTISSRQDAVDYLTWTYFFRRLLQNPSYYDLEATDSDSVNAYMSGLVATALSQLEEAGCITLGGDDDG 1916 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73145.14992.1 >prot_H-elongata_contig73145.14992.1 ID=prot_H-elongata_contig73145.14992.1|Name=mRNA_H-elongata_contig73145.14992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp MIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLback to top mRNA from alignment at H-elongata_contig73145:1337..2218- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73145.14992.1 ID=mRNA_H-elongata_contig73145.14992.1|Name=mRNA_H-elongata_contig73145.14992.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=882bp|location=Sequence derived from alignment at H-elongata_contig73145:1337..2218- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73145:1337..2218- >mRNA_H-elongata_contig73145.14992.1 ID=mRNA_H-elongata_contig73145.14992.1|Name=mRNA_H-elongata_contig73145.14992.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig73145:1337..2218- (Himanthalia elongata Himel1 dioecious)back to top |