mRNA_H-elongata_contig73145.14992.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73145.14992.1
Unique NamemRNA_H-elongata_contig73145.14992.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 5.600e-65
Identity = 105/122 (86.07%), Postives = 112/122 (91.80%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGD 366
            QMIGRAGRPQFDDHAVACILVHEPKKNF+KKFLYEPFPVES+LP +LHNHLSAECAGGAIR RRDAVDYLTWTF+FVRLLANPS+YGLE   TEGVQ HLL LV++TL DL  AGCIELGGD
Sbjct: 1824 QMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGVQEHLLGLVESTLADLEDAGCIELGGD 1945          
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A7S2BB24_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BB24_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.770e-49
Identity = 77/122 (63.11%), Postives = 97/122 (79.51%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGD 366
            QM+GRAGRPQFDD  ++C+ V + KKNFYKKFLYEPFPVES L + LHNH++AE AGG I+ ++DAV+YLTWT+FF RLL NP+YY L    T+GVQ +LL L+DTT+ DL  AGC+E+  D
Sbjct:   35 QMMGRAGRPQFDDKGISCVFVEQSKKNFYKKFLYEPFPVESSLKDVLHNHMNAEVAGGTIKNKQDAVEYLTWTYFFRRLLVNPAYYHLHESSTDGVQKYLLALIDTTMDDLENAGCVEIEDD 156          
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A7S1T1Q3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T1Q3_9CHLO)

HSP 1 Score: 166 bits (419), Expect = 5.090e-49
Identity = 77/123 (62.60%), Postives = 91/123 (73.98%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGDG 369
            QM+GRAGRPQ+D H VA I+VHEPKKNFYKKFLYEPFPVES LPE L +H++AE  GG +R  +DA+DYLTWTFF+ RLL NPSYY LE  + E V   L  +VD     L  AGC+E  G+G
Sbjct:   19 QMMGRAGRPQYDKHGVAVIMVHEPKKNFYKKFLYEPFPVESSLPEQLPDHINAEVVGGTVRSMQDALDYLTWTFFYRRLLQNPSYYDLESTEAESVNGFLSTMVDDVFAALEEAGCVETDGEG 141          
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: W7TU71_9STRA (Activating signal cointegrator 1 complex subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU71_9STRA)

HSP 1 Score: 168 bits (426), Expect = 5.480e-46
Identity = 78/125 (62.40%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGDGMG 375
            QM+GRAGRPQFD   VACILVHEPKKNF KKFLYEPFPVES L + LHNHL+AE +GG+++ +  A++YLTWTFFF RL+ NP+YY LE    E VQ++LL+L++   +DL  AGCIE+  D  G
Sbjct: 1741 QMMGRAGRPQFDTRGVACILVHEPKKNFIKKFLYEPFPVESSLKDVLHNHLNAEVSGGSVQNKEQAMEYLTWTFFFRRLVMNPTYYSLEETAPEAVQSYLLELINGVFEDLEDAGCIEIDEDEFG 1865          
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A7S0PZ95_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PZ95_9EUKA)

HSP 1 Score: 164 bits (415), Expect = 1.320e-45
Identity = 75/124 (60.48%), Postives = 92/124 (74.19%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGDGM 372
            QM+GRAGRPQFD+  VACILVHEPKK FYKKFLYEPFPVES+L   LH+H +AE   G IR ++DAVD+LTWT+F+ RL  NP+YY       EG  A L +LV+ T+ DL  AGC+E+  DG+
Sbjct:  228 QMMGRAGRPQFDERGVACILVHEPKKTFYKKFLYEPFPVESQLQNQLHDHFNAEVVTGTIRSKQDAVDFLTWTYFYRRLGKNPAYYSQPDASEEGTAAFLSELVEATISDLENAGCVEVADDGV 351          
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: UPI00053A131A (DExH-box ATP-dependent RNA helicase DExH14-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A131A)

HSP 1 Score: 156 bits (395), Expect = 2.750e-45
Identity = 74/119 (62.18%), Postives = 88/119 (73.95%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIEL 357
            QM+GRAGRPQFD H  A ILVHEPKK+FYKKFLYEPFPVES L E LH+H +AE   G I  + DAV YLTWT+ F RL+ANP+YYGLEG   E V ++L  LV  T  DL  +GC+++
Sbjct:   52 QMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGLEGTQDETVCSYLSRLVQNTFDDLEDSGCLKV 170          
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A250WZI2_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WZI2_9CHLO)

HSP 1 Score: 166 bits (420), Expect = 3.530e-45
Identity = 79/122 (64.75%), Postives = 90/122 (73.77%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGD 366
            QM+GRAGRPQ+D H VA I+VHEPKK FYK+FLYEPFPVES LP  L NH +AE   G I CR+DAVDYLTWTFFF RLL NPSYY LE    E +  +L +LV+  L  L  AGC+ LGGD
Sbjct: 1761 QMMGRAGRPQYDKHGVAVIMVHEPKKQFYKRFLYEPFPVESSLPGQLANHFNAEVVAGTITCRQDAVDYLTWTFFFRRLLQNPSYYDLEETTAEALNVYLTELVEGALVALEEAGCVVLGGD 1882          
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A7S0NSC9_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NSC9_9EUKA)

HSP 1 Score: 165 bits (418), Expect = 6.430e-45
Identity = 78/125 (62.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGDGMG 375
            QM+GRAGRPQFDD  +A ILVHEPKK FYKKFLYEPFPVES+L E LH+H +AE   G+IR ++DAVD+LTWT+F+ RL  NPSYY       EG  A L  LV+TT+ DL  AGC+E+  DG+G
Sbjct:  879 QMMGRAGRPQFDDTGIAVILVHEPKKTFYKKFLYEPFPVESQLQEQLHDHFNAEVVSGSIRSKQDAVDFLTWTYFYRRLGKNPSYYHQPDASEEGTAAFLSALVETTVADLENAGCLEVADDGVG 1003          
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A7S3UTV5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTV5_HETAK)

HSP 1 Score: 163 bits (413), Expect = 6.870e-45
Identity = 78/114 (68.42%), Postives = 91/114 (79.82%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGA 342
            QM+GRAGRPQFDD AVA +LVHEPKK FY+KFLY PFPVES L E LHNH+SAE AGG+I+ ++DAV+YLTWT+FF RL+ NP+YY LE    EGVQ +LL LVD  L DL  A
Sbjct:  527 QMMGRAGRPQFDDTAVAAVLVHEPKKIFYQKFLYSPFPVESSLREYLHNHISAEVAGGSIKSKQDAVEYLTWTYFFRRLVMNPTYYHLEDPSPEGVQDYLLSLVDAVLTDLEAA 640          
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Match: A0A8J4D9Y5_9CHLO (Uncharacterized protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D9Y5_9CHLO)

HSP 1 Score: 165 bits (417), Expect = 8.960e-45
Identity = 80/125 (64.00%), Postives = 92/125 (73.60%), Query Frame = 1
Query:    1 QMIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHLSAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLLDLVDTTLKDLAGAGCIELGGDGMG 375
            QM+GRAGRPQFD H VA ILVHEPKK FYK+FLYEPFPVES L + + +H +AE   G I  R+DAVDYLTWT+FF RLL NPSYY LE  D++ V A++  LV T L  L  AGCI LGGD  G
Sbjct: 1792 QMMGRAGRPQFDRHGVAVILVHEPKKQFYKRFLYEPFPVESSLQDQVADHFNAEVVAGTISSRQDAVDYLTWTYFFRRLLQNPSYYDLEATDSDSVNAYMSGLVATALSQLEEAGCITLGGDDDG 1916          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73145.14992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN81_ECTSI5.600e-6586.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2BB24_9STRA1.770e-4963.11Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1T1Q3_9CHLO5.090e-4962.60Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
W7TU71_9STRA5.480e-4662.40Activating signal cointegrator 1 complex subunit 3... [more]
A0A7S0PZ95_9EUKA1.320e-4560.48Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
UPI00053A131A2.750e-4562.18DExH-box ATP-dependent RNA helicase DExH14-like n=... [more]
A0A250WZI2_9CHLO3.530e-4564.75Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A7S0NSC9_9EUKA6.430e-4562.40Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3UTV5_HETAK6.870e-4568.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J4D9Y5_9CHLO8.960e-4564.00Uncharacterized protein n=3 Tax=Volvox reticulifer... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73145contigH-elongata_contig73145:1337..2218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.0
Seed ortholog evalue7.7e-56
Seed eggNOG ortholog2880.D7FN81
KEGG koko:K12854,ko:K18663
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0952@2759
EC3.6.4.12,3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73145.14992.1prot_H-elongata_contig73145.14992.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73145 1337..2215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.1887712-CDS-H-elongata_contig73145:1336..14201622931133.1887712-CDS-H-elongata_contig73145:1336..1420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73145 1337..1420 -
1691679711.8609881-CDS-H-elongata_contig73145:1336..14201691679711.8609881-CDS-H-elongata_contig73145:1336..1420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73145 1337..1420 -
1622931133.2079127-CDS-H-elongata_contig73145:1927..22151622931133.2079127-CDS-H-elongata_contig73145:1927..2215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73145 1928..2215 -
1691679711.8796048-CDS-H-elongata_contig73145:1927..22151691679711.8796048-CDS-H-elongata_contig73145:1927..2215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73145 1928..2215 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.225766-UTR-H-elongata_contig73145:2215..22181622931133.225766-UTR-H-elongata_contig73145:2215..2218Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73145 2216..2218 -
1691679711.8919947-UTR-H-elongata_contig73145:2215..22181691679711.8919947-UTR-H-elongata_contig73145:2215..2218Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73145 2216..2218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73145.14992.1

>prot_H-elongata_contig73145.14992.1 ID=prot_H-elongata_contig73145.14992.1|Name=mRNA_H-elongata_contig73145.14992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MIGRAGRPQFDDHAVACILVHEPKKNFYKKFLYEPFPVESRLPEALHNHL
SAECAGGAIRCRRDAVDYLTWTFFFVRLLANPSYYGLEGGDTEGVQAHLL
DLVDTTLKDLAGAGCIELGGDGMG
back to top

mRNA from alignment at H-elongata_contig73145:1337..2218-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73145.14992.1 ID=mRNA_H-elongata_contig73145.14992.1|Name=mRNA_H-elongata_contig73145.14992.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=882bp|location=Sequence derived from alignment at H-elongata_contig73145:1337..2218- (Himanthalia elongata Himel1 dioecious)
CAGATGATTGGGCGGGCGGGCCGACCACAGTTCGATGATCACGCCGTGGC CTGCATCCTGGTACACGAGCCCAAGAAAAACTTTTACAAGAAATTTCTGT ATGAGCCGTTCCCCGTGGAGTCCCGACTCCCCGAAGCGCTCCACAACCAC CTCAGCGCCGAGTGCGCCGGCGGGGCGATTCGCTGCCGGAGGGACGCGGT GGACTATCTTACGTGGACGTTCTTCTTTGTTAGGCTATTGGCTAACCCTT CCTACTACGGACTCGAGGGGGGCGACACGGAGGGGGTTCAGGTGCCAGCA CGCGTGCGCGCGATTTTTTTTTTTTTTTTGGCCTTGGCCTCGAGGCCCGC GCTGTTGGTGNNNNNNNNNNGCGGGGCTGTCGGCTGCCCGGGCGGGCTCC GGTTTGGCGGGGGGCGTCACGGAGGTGGTTCGGGGGCCGGCGCGCGTGCG CGCGATTTTTTTTTTTTATCGGCCTTGGCCTCGAGGCACGCGCTGTCGGC GCACGCTGTCGGTAGCACGCTAAGTGCTGGTAAAAGTTATTAAATTGACG AGTGCCGCGCATCTACTGGTACCCTTGACGGATTTTAAGGAGGGATTGGG AGAGGGTAACTCTACCTGGGAGAGCTTATTTGAAAGGTGTAACACCTTCG GCAAGGGTCGCGCCCAGCTGTTGGTGATCTCGCGCGCATCCCGCGGCTAG AGAGTGTAGAAAGTGTACAAGGCACCTCGCGGGGTTAGGCTGAACATGTG CGGCGATCCACGATTTTATTTATTGCAACGGCTGAACGCGTCCGGCAGGC ACATCTTCTAGATCTCGTGGATACCACCCTGAAGGATCTGGCAGGCGCTG GGTGCATCGAGCTTGGCGGCGACGGAATGGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig73145:1337..2218-

>mRNA_H-elongata_contig73145.14992.1 ID=mRNA_H-elongata_contig73145.14992.1|Name=mRNA_H-elongata_contig73145.14992.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig73145:1337..2218- (Himanthalia elongata Himel1 dioecious)
ATGATTGGGCGGGCGGGCCGACCACAGTTCGATGATCACGCCGTGGCCTG
CATCCTGGTACACGAGCCCAAGAAAAACTTTTACAAGAAATTTCTGTATG
AGCCGTTCCCCGTGGAGTCCCGACTCCCCGAAGCGCTCCACAACCACCTC
AGCGCCGAGTGCGCCGGCGGGGCGATTCGCTGCCGGAGGGACGCGGTGGA
CTATCTTACGTGGACGTTCTTCTTTGTTAGGCTATTGGCTAACCCTTCCT
ACTACGGACTCGAGGGGGGCGACACGGAGGGGGTTCAGATGATTGGGCGG
GCGGGCCGACCACAGTTCGATGATCACGCCGTGGCCTGCATCCTGGTACA
CGAGCCCAAGAAAAACTTTTACAAGAAATTTCTGTATGAGCCGTTCCCCG
TGGAGTCCCGACTCCCCGAAGCGCTCCACAACCACCTCAGCGCCGAGTGC
GCCGGCGGGGCGATTCGCTGCCGGAGGGACGCGGTGGACTATCTTACGTG
GACGTTCTTCTTTGTTAGGCTATTGGCTAACCCTTCCTACTACGGACTCG
AGGGGGGCGACACGGAGGGGGTTCAGGCACATCTTCTAGATCTCGTGGAT
ACCACCCTGAAGGATCTGGCAGGCGCTGGGTGCATCGAGCTTGGCGGCGA
CGGAATGGGAGCACATCTTCTAGATCTCGTGGATACCACCCTGAAGGATC
TGGCAGGCGCTGGGTGCATCGAGCTTGGCGGCGACGGAATGGGA
back to top