mRNA_H-elongata_contig73066.14984.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 163 bits (413), Expect = 2.450e-40 Identity = 103/294 (35.03%), Postives = 155/294 (52.72%), Query Frame = 2
Query: 383 RLPKPPTATALAA-T*RGPR-----DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGLK--IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWY-DRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
RL + T LAA T P+ D+ +F + H + ++R TA+ G +L C CS ++ + + + T++ +D++ GR+F+DL G S+GG + M+ DDFTR + FLKHKSDA R + A +G+ + ++R+D GGE+ G +F S +L IK+E TP Y+PQY V ER LGL+ + +A L + K+D+LWAE M +AC+ N S+ SPYE+WY + RP PF Y R +P KL P+ SC +G
Sbjct: 640 RLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCFYVG 929
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 163 bits (413), Expect = 2.500e-40 Identity = 103/294 (35.03%), Postives = 155/294 (52.72%), Query Frame = 2
Query: 383 RLPKPPTATALAA-T*RGPR-----DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGLK--IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWY-DRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
RL + T LAA T P+ D+ +F + H + ++R TA+ G +L C CS ++ + + + T++ +D++ GR+F+DL G S+GG + M+ DDFTR + FLKHKSDA R + A +G+ + ++R+D GGE+ G +F S +L IK+E TP Y+PQY V ER LGL+ + +A L + K+D+LWAE M +AC+ N S+ SPYE+WY + RP PF Y R +P KL P+ SC +G
Sbjct: 347 RLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCFYVG 636
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 159 bits (402), Expect = 6.990e-40 Identity = 106/295 (35.93%), Postives = 153/295 (51.86%), Query Frame = 2
Query: 383 RLPKPPTATALAA-T*RGPR-----DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFA---PEGLKIGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWY-DRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
RL + T LAA T P+ DI +F + H E ++R TA+ G +L C CS S+ R + + T+ +D++ GR+F+DL G S+GG + M+ DDFTR + FLK++SDA R + A P ++I +R+D GGE+ G +F S +L IK+E TP Y+PQY V ER LGL+ + +A L + K+D+LWAE M +AC+ N S+ SPYE+WY + RP PF Y R +P KL P+ SC +G
Sbjct: 228 RLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 517
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 160 bits (404), Expect = 2.960e-39 Identity = 104/294 (35.37%), Postives = 153/294 (52.04%), Query Frame = 2
Query: 383 RLPKPPTATALAA-T*RGPR-----DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGLK--IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWY-DRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
RL + T LAA T P+ DI +F + H E ++R TA+ G +L C CS S+ R + + T+ +D++ GR+F+DL G S+GG + M+ DDFTR + FL++KSDA + R + A G+ + ++R+D GGE+ G +F S +L IK+E TP Y+PQY V ER LGL+ + +A L + K+D+LWAE M +AC+ N S+ PYE+WY + RP PF Y R +P KL P+ SC +G
Sbjct: 106 RLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 395
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 159 bits (403), Expect = 4.020e-39 Identity = 93/268 (34.70%), Postives = 143/268 (53.36%), Query Frame = 2
Query: 440 DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGLK--IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWYDRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
D+ +F + H E ++R TA+ G++L+ C CS S+ ++ + T+ +D++ GR+F+DL G S+GG + M+ DDFTR + FLK KSDA + R + A +G+ + ++R+D GGE+ G +F S +L IK+E TP Y+PQY V ER LGL+ +A L + K+DRLWAE M +AC+ N S+ SPYE+W+ + PF Y R +P KL P+ +C +G
Sbjct: 571 DVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA-SHARPYPFLKPAYCRWQRPS-KLLPKGEACFYVG 835
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 159 bits (403), Expect = 5.000e-39 Identity = 105/294 (35.71%), Postives = 153/294 (52.04%), Query Frame = 2
Query: 383 RLPKPPTATALAA-T*RGPR-----DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGLK--IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWY-DRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
RL + T LAA T P+ DI +F + H E ++R TA+ G +L C CS S+ R + T+ +D++ GR+F+DL G S+GG + M+ DDFTR + FL++KSDA + R + A G+ + ++R+D GGE+ G +F S +L IK+E TP Y+PQY V ER LGL+ + +A L + K+D+LWAE M +AC+ N S+ SPYE+WY + RP PF Y R +P KL P+ SC +G
Sbjct: 161 RLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 450
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 159 bits (401), Expect = 9.390e-39 Identity = 95/269 (35.32%), Postives = 146/269 (54.28%), Query Frame = 2
Query: 440 DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGLK--IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWY-DRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
D+ F + GH E ++R TA+ G++L+ C CS + R A+ T N +D++ GR+F++L G S+GG + M+ DDFTR + FL+ KSDA + R + + A +G+ I ++R+D GGE+ G +F S +L IK+E TP ++P++ V ER LGL+ + +A L + K+DRLWAE M +AC+ N S+ SPYE+WY + RP PF Y + +P KL P+ SC +G
Sbjct: 392 DVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVG 656
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 151 bits (381), Expect = 5.260e-38 Identity = 97/249 (38.96%), Postives = 131/249 (52.61%), Query Frame = 2
Query: 410 ALAAT*RGPRDIMKFLQVLGHPAEQIMRNTARMAGVQLSR-IWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPE-GLKIGVIRTDGGGEWHGQFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVALLQDIMEGKSDR-----LWAEDMAYACDMWNRCTSSSLDSDTSPYELWYDRRPTFDNIPPF 1135
A AAT P D+ GH E++++ TA+ GVQL+ PC+ CS S+ + KST+ + RLF++L G Q S+GGN + ++ DD TR+ V FLKHKSDA + DY A ++ V RTDGGGE+ GQF R+ GIK+E TPP TP+Y V ERALGLL D +A E D LWAE ++ AC N ++ SP EL++ P + PF
Sbjct: 127 AKAAT---PTDLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF 372
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE) HSP 1 Score: 152 bits (384), Expect = 7.240e-37 Identity = 93/242 (38.43%), Postives = 132/242 (54.55%), Query Frame = 2
Query: 434 PRDIMKFLQVLGHPAEQIMRNTARMAGVQLSR-IWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVALLQDIMEGKSDR-----LWAEDMAYACDMWNRCTSSSLDSDTSPYELWYDRRPTFDNIPPF 1135
P D+ ++ GH E ++R TA GVQL+ PC+ CS S+ V KST + + R+++DL G + S+GGN + ++ DDF+R+ V FLKHKSDA + DY EG+ K+ + RTDGGGE+ GQF R+ GIK+E TPP+TP YK V ERALGL+ D +A + D LWAE ++ AC + S + D S YE +++ P + PF
Sbjct: 419 PTDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLKCIATKSNEGDKSAYETFHNSPPPVGSTYPF 659
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 149 bits (375), Expect = 2.370e-35 Identity = 92/245 (37.55%), Postives = 132/245 (53.88%), Query Frame = 2
Query: 434 PRDIMKFLQVLGHPAEQIMRNTARMAGVQLSR-IWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVALLQDIMEGKS--------DRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWYDRRPTFDNIPPF 1135
P D+ ++ G E ++R TA GVQL+ PC+ CS S V KST ++ R+++DL G + S+GGN + ++ DDF+R+ V FLKHKSDA L + DY +G+ ++ + RTDGGGE+ GQF R+ GIK+E TPP+TP+Y V ERALG L T A L ++ LWAE ++ AC N + S + D S YE+++D P + PF
Sbjct: 583 PTDLNEYHLAHGQARETLLRITAEQQGVQLTDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF 826 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73066.14984.1 >prot_H-elongata_contig73066.14984.1 ID=prot_H-elongata_contig73066.14984.1|Name=mRNA_H-elongata_contig73066.14984.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp MKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTback to top mRNA from alignment at H-elongata_contig73066:1640..2878- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73066.14984.1 ID=mRNA_H-elongata_contig73066.14984.1|Name=mRNA_H-elongata_contig73066.14984.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1239bp|location=Sequence derived from alignment at H-elongata_contig73066:1640..2878- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73066:1640..2878- >mRNA_H-elongata_contig73066.14984.1 ID=mRNA_H-elongata_contig73066.14984.1|Name=mRNA_H-elongata_contig73066.14984.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig73066:1640..2878- (Himanthalia elongata Himel1 dioecious)back to top |