mRNA_H-elongata_contig73066.14984.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73066.14984.1
Unique NamemRNA_H-elongata_contig73066.14984.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 2.450e-40
Identity = 103/294 (35.03%), Postives = 155/294 (52.72%), Query Frame = 2
Query:  383 RLPKPPTATALAA-T*RGPR-----DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGLK--IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWY-DRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
            RL +    T LAA T   P+     D+ +F  +  H  + ++R TA+  G +L      C  CS ++  +  + + T++ +D++ GR+F+DL G     S+GG  + M+  DDFTR   + FLKHKSDA    R  +    A +G+   + ++R+D GGE+ G +F S   +L IK+E TP Y+PQY  V ER LGL+ +  +A       L   +   K+D+LWAE M +AC+  N    S+     SPYE+WY + RP      PF    Y R  +P  KL P+  SC  +G
Sbjct:  640 RLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCFYVG 929          
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 2.500e-40
Identity = 103/294 (35.03%), Postives = 155/294 (52.72%), Query Frame = 2
Query:  383 RLPKPPTATALAA-T*RGPR-----DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGLK--IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWY-DRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
            RL +    T LAA T   P+     D+ +F  +  H  + ++R TA+  G +L      C  CS ++  +  + + T++ +D++ GR+F+DL G     S+GG  + M+  DDFTR   + FLKHKSDA    R  +    A +G+   + ++R+D GGE+ G +F S   +L IK+E TP Y+PQY  V ER LGL+ +  +A       L   +   K+D+LWAE M +AC+  N    S+     SPYE+WY + RP      PF    Y R  +P  KL P+  SC  +G
Sbjct:  347 RLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCFYVG 636          
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 6.990e-40
Identity = 106/295 (35.93%), Postives = 153/295 (51.86%), Query Frame = 2
Query:  383 RLPKPPTATALAA-T*RGPR-----DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFA---PEGLKIGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWY-DRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
            RL +    T LAA T   P+     DI +F  +  H  E ++R TA+  G +L      C  CS S+  R  + + T+  +D++ GR+F+DL G     S+GG  + M+  DDFTR   + FLK++SDA    R  +    A   P  ++I  +R+D GGE+ G +F S   +L IK+E TP Y+PQY  V ER LGL+ +  +A       L   +   K+D+LWAE M +AC+  N    S+     SPYE+WY + RP      PF    Y R  +P  KL P+  SC  +G
Sbjct:  228 RLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 517          
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.960e-39
Identity = 104/294 (35.37%), Postives = 153/294 (52.04%), Query Frame = 2
Query:  383 RLPKPPTATALAA-T*RGPR-----DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGLK--IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWY-DRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
            RL +    T LAA T   P+     DI +F  +  H  E ++R TA+  G +L      C  CS S+  R  + + T+  +D++ GR+F+DL G     S+GG  + M+  DDFTR   + FL++KSDA +  R  +    A  G+   + ++R+D GGE+ G +F S   +L IK+E TP Y+PQY  V ER LGL+ +  +A       L   +   K+D+LWAE M +AC+  N    S+      PYE+WY + RP      PF    Y R  +P  KL P+  SC  +G
Sbjct:  106 RLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 395          
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 4.020e-39
Identity = 93/268 (34.70%), Postives = 143/268 (53.36%), Query Frame = 2
Query:  440 DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGLK--IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWYDRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
            D+ +F  +  H  E ++R TA+  G++L+     C  CS S+ ++  +   T+  +D++ GR+F+DL G     S+GG  + M+  DDFTR   + FLK KSDA +  R  +    A +G+   + ++R+D GGE+ G +F S   +L IK+E TP Y+PQY  V ER LGL+    +A       L   +   K+DRLWAE M +AC+  N    S+     SPYE+W+    +     PF    Y R  +P  KL P+  +C  +G
Sbjct:  571 DVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA-SHARPYPFLKPAYCRWQRPS-KLLPKGEACFYVG 835          
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 5.000e-39
Identity = 105/294 (35.71%), Postives = 153/294 (52.04%), Query Frame = 2
Query:  383 RLPKPPTATALAA-T*RGPR-----DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGLK--IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWY-DRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
            RL +    T LAA T   P+     DI +F  +  H  E ++R TA+  G +L      C  CS S+  R  +   T+  +D++ GR+F+DL G     S+GG  + M+  DDFTR   + FL++KSDA +  R  +    A  G+   + ++R+D GGE+ G +F S   +L IK+E TP Y+PQY  V ER LGL+ +  +A       L   +   K+D+LWAE M +AC+  N    S+     SPYE+WY + RP      PF    Y R  +P  KL P+  SC  +G
Sbjct:  161 RLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCFYVG 450          
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 9.390e-39
Identity = 95/269 (35.32%), Postives = 146/269 (54.28%), Query Frame = 2
Query:  440 DIMKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGLK--IGVIRTDGGGEWHG-QFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVA-------LLQDIMEGKSDRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWY-DRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRVSCIMLG 1213
            D+  F  + GH  E ++R TA+  G++L+     C  CS  +  R A+   T N +D++ GR+F++L G     S+GG  + M+  DDFTR   + FL+ KSDA +  R  + +  A +G+   I ++R+D GGE+ G +F S   +L IK+E TP ++P++  V ER LGL+ +  +A       L   +   K+DRLWAE M +AC+  N    S+     SPYE+WY + RP      PF    Y +  +P  KL P+  SC  +G
Sbjct:  392 DVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVG 656          
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 5.260e-38
Identity = 97/249 (38.96%), Postives = 131/249 (52.61%), Query Frame = 2
Query:  410 ALAAT*RGPRDIMKFLQVLGHPAEQIMRNTARMAGVQLSR-IWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPE-GLKIGVIRTDGGGEWHGQFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVALLQDIMEGKSDR-----LWAEDMAYACDMWNRCTSSSLDSDTSPYELWYDRRPTFDNIPPF 1135
            A AAT   P D+       GH  E++++ TA+  GVQL+     PC+ CS S+     + KST+     +  RLF++L G  Q  S+GGN + ++  DD TR+  V FLKHKSDA       + DY A     ++ V RTDGGGE+ GQF    R+ GIK+E TPP TP+Y  V ERALGLL D  +A      E   D      LWAE ++ AC   N   ++      SP EL++   P   +  PF
Sbjct:  127 AKAAT---PTDLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF 372          
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 7.240e-37
Identity = 93/242 (38.43%), Postives = 132/242 (54.55%), Query Frame = 2
Query:  434 PRDIMKFLQVLGHPAEQIMRNTARMAGVQLSR-IWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVALLQDIMEGKSDR-----LWAEDMAYACDMWNRCTSSSLDSDTSPYELWYDRRPTFDNIPPF 1135
            P D+ ++    GH  E ++R TA   GVQL+     PC+ CS S+     V KST +    +  R+++DL G  +  S+GGN + ++  DDF+R+  V FLKHKSDA       + DY   EG+  K+ + RTDGGGE+ GQF    R+ GIK+E TPP+TP YK V ERALGL+ D  +A      +   D      LWAE ++ AC       + S + D S YE +++  P   +  PF
Sbjct:  419 PTDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLKCIATKSNEGDKSAYETFHNSPPPVGSTYPF 659          
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 2.370e-35
Identity = 92/245 (37.55%), Postives = 132/245 (53.88%), Query Frame = 2
Query:  434 PRDIMKFLQVLGHPAEQIMRNTARMAGVQLSR-IWRPCVHCSESRVWRYAVPKSTENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNTLRDIINDYFAPEGL--KIGVIRTDGGGEWHGQFLSFLRKLGIKRESTPPYTPQYKSVVERALGLLRDKTVALLQDIMEGKS--------DRLWAEDMAYACDMWNRCTSSSLDSDTSPYELWYDRRPTFDNIPPF 1135
            P D+ ++    G   E ++R TA   GVQL+     PC+ CS S      V KST     ++  R+++DL G  +  S+GGN + ++  DDF+R+  V FLKHKSDA   L   + DY   +G+  ++ + RTDGGGE+ GQF    R+ GIK+E TPP+TP+Y  V ERALG L   T A L   ++             LWAE ++ AC   N   + S + D S YE+++D  P   +  PF
Sbjct:  583 PTDLNEYHLAHGQARETLLRITAEQQGVQLTDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF 826          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73066.14984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBA7_9PHAE2.450e-4035.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE2.500e-4035.03Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE6.990e-4035.93Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L3Y0_9PHAE2.960e-3935.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE4.020e-3934.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE5.000e-3935.71Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JH25_9PHAE9.390e-3935.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LL52_9PHAE5.260e-3838.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPZ8_9PHAE7.240e-3738.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE2.370e-3537.55Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73066contigH-elongata_contig73066:1640..2878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score123.2
Seed ortholog evalue1.7e-25
Seed eggNOG ortholog400682.PAC_15703055
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1213
Cds size768
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73066.14984.1prot_H-elongata_contig73066.14984.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73066 1640..2407 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.3053243-CDS-H-elongata_contig73066:1639..24071622931132.3053243-CDS-H-elongata_contig73066:1639..2407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73066 1640..2407 -
1691679711.4945264-CDS-H-elongata_contig73066:1639..24071691679711.4945264-CDS-H-elongata_contig73066:1639..2407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73066 1640..2407 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.324445-UTR-H-elongata_contig73066:2407..24711622931132.324445-UTR-H-elongata_contig73066:2407..2471Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73066 2408..2471 -
1691679711.5074291-UTR-H-elongata_contig73066:2407..24711691679711.5074291-UTR-H-elongata_contig73066:2407..2471Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73066 2408..2471 -
1622931132.33917-UTR-H-elongata_contig73066:2497..28781622931132.33917-UTR-H-elongata_contig73066:2497..2878Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73066 2498..2878 -
1691679711.5154924-UTR-H-elongata_contig73066:2497..28781691679711.5154924-UTR-H-elongata_contig73066:2497..2878Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73066 2498..2878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73066.14984.1

>prot_H-elongata_contig73066.14984.1 ID=prot_H-elongata_contig73066.14984.1|Name=mRNA_H-elongata_contig73066.14984.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
MKFLQVLGHPAEQIMRNTARMAGVQLSRIWRPCVHCSESRVWRYAVPKST
ENLTDRRAGRLFIDLSGPFQETSLGGNRFVMLCIDDFTRFKMVRFLKHKS
DATNTLRDIINDYFAPEGLKIGVIRTDGGGEWHGQFLSFLRKLGIKREST
PPYTPQYKSVVERALGLLRDKTVALLQDIMEGKSDRLWAEDMAYACDMWN
RCTSSSLDSDTSPYELWYDRRPTFDNIPPFGTVGYLRRSKPGHKLSPRRV
SCIMLG
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mRNA from alignment at H-elongata_contig73066:1640..2878-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73066.14984.1 ID=mRNA_H-elongata_contig73066.14984.1|Name=mRNA_H-elongata_contig73066.14984.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1239bp|location=Sequence derived from alignment at H-elongata_contig73066:1640..2878- (Himanthalia elongata Himel1 dioecious)
TGGGCGAACGATAGCGGTGCGACAGAGCATATGACACAAGACCCGGCGGG TCTAGAGGATTATACGCCGGAACCCGCTGGAGATCGAGTGGAGAGCGCCG GCGGTACCCTAATTCCGGTGGCGGGATATGGACATCTCCGCCTCCTGGTG GACCAAGGCAACGGCAACTTCACCGACTCGACACGCCAGCTCACGCTAAA GCACGTCGCACATGTGCCGAATCTTGGACAGCATAATCTGCTCTCTACGA AACGGCTGACACAGTTTTTCGACGCACCGATGCGCGTCTACCCAGCAGCT GCATTGATCCGCACCCGGCGAGGGGGCATGCCACTCTTTTTCCGCCCATT TCGACCAGAAAACGGCCTTTTGGGGATCAAGGTGCGCCGCCACGTCGCTG GGAAGAGCCGCCTACCCAAACCCCCAACAGCAACAGCGCTCGCGGCGACG TAGCGCGGCCCGCGGGATATCATGAAGTTCCTCCAGGTGCTGGGGCACCC GGCAGAGCAGATCATGCGCAACACGGCCCGTATGGCGGGCGTGCAATTAA GCAGAATTTGGCGACCATGCGTACACTGCTCCGAATCTAGGGTGTGGCGA TACGCCGTGCCTAAATCCACGGAGAATCTGACTGACAGGCGCGCGGGACG GCTGTTTATTGATCTCTCAGGCCCCTTTCAAGAGACGTCTCTCGGAGGAA ACAGATTCGTCATGCTGTGCATTGACGACTTCACCCGTTTCAAAATGGTC CGTTTCCTCAAGCACAAGAGTGACGCCACGAATACGTTGAGGGACATAAT CAACGACTACTTCGCGCCCGAGGGCCTCAAGATCGGCGTCATCCGCACGG ATGGTGGGGGAGAATGGCACGGCCAGTTCCTGTCTTTCCTGCGTAAGCTC GGAATCAAGCGCGAGTCGACACCTCCATATACCCCCCAATACAAAAGCGT CGTGGAGCGCGCTCTGGGGCTACTGCGCGACAAGACCGTGGCCCTGCTGC AAGATATAATGGAGGGTAAGAGCGACCGTCTATGGGCGGAAGATATGGCG TACGCATGCGATATGTGGAACCGATGCACCTCCTCCTCCCTCGACAGCGA CACCTCGCCATATGAGCTTTGGTACGACCGACGGCCGACATTCGACAACA TCCCCCCATTCGGGACCGTGGGATATCTACGACGGTCGAAGCCGGGGCAC AAACTATCCCCCCGCAGGGTGAGCTGCATCATGCTCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig73066:1640..2878-

>mRNA_H-elongata_contig73066.14984.1 ID=mRNA_H-elongata_contig73066.14984.1|Name=mRNA_H-elongata_contig73066.14984.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig73066:1640..2878- (Himanthalia elongata Himel1 dioecious)
ATGAAGTTCCTCCAGGTGCTGGGGCACCCGGCAGAGCAGATCATGCGCAA
CACGGCCCGTATGGCGGGCGTGCAATTAAGCAGAATTTGGCGACCATGCG
TACACTGCTCCGAATCTAGGGTGTGGCGATACGCCGTGCCTAAATCCACG
GAGAATCTGACTGACAGGCGCGCGGGACGGCTGTTTATTGATCTCTCAGG
CCCCTTTCAAGAGACGTCTCTCGGAGGAAACAGATTCGTCATGCTGTGCA
TTGACGACTTCACCCGTTTCAAAATGGTCCGTTTCCTCAAGCACAAGAGT
GACGCCACGAATACGTTGAGGGACATAATCAACGACTACTTCGCGCCCGA
GGGCCTCAAGATCGGCGTCATCCGCACGGATGGTGGGGGAGAATGGCACG
GCCAGTTCCTGTCTTTCCTGCGTAAGCTCGGAATCAAGCGCGAGTCGACA
CCTCCATATACCCCCCAATACAAAAGCGTCGTGGAGCGCGCTCTGGGGCT
ACTGCGCGACAAGACCGTGGCCCTGCTGCAAGATATAATGGAGGGTAAGA
GCGACCGTCTATGGGCGGAAGATATGGCGTACGCATGCGATATGTGGAAC
CGATGCACCTCCTCCTCCCTCGACAGCGACACCTCGCCATATGAGCTTTG
GTACGACCGACGGCCGACATTCGACAACATCCCCCCATTCGGGACCGTGG
GATATCTACGACGGTCGAAGCCGGGGCACAAACTATCCCCCCGCAGGGTG
AGCTGCATCATGCTCGGGATGAAGTTCCTCCAGGTGCTGGGGCACCCGGC
AGAGCAGATCATGCGCAACACGGCCCGTATGGCGGGCGTGCAATTAAGCA
GAATTTGGCGACCATGCGTACACTGCTCCGAATCTAGGGTGTGGCGATAC
GCCGTGCCTAAATCCACGGAGAATCTGACTGACAGGCGCGCGGGACGGCT
GTTTATTGATCTCTCAGGCCCCTTTCAAGAGACGTCTCTCGGAGGAAACA
GATTCGTCATGCTGTGCATTGACGACTTCACCCGTTTCAAAATGGTCCGT
TTCCTCAAGCACAAGAGTGACGCCACGAATACGTTGAGGGACATAATCAA
CGACTACTTCGCGCCCGAGGGCCTCAAGATCGGCGTCATCCGCACGGATG
GTGGGGGAGAATGGCACGGCCAGTTCCTGTCTTTCCTGCGTAAGCTCGGA
ATCAAGCGCGAGTCGACACCTCCATATACCCCCCAATACAAAAGCGTCGT
GGAGCGCGCTCTGGGGCTACTGCGCGACAAGACCGTGGCCCTGCTGCAAG
ATATAATGGAGGGTAAGAGCGACCGTCTATGGGCGGAAGATATGGCGTAC
GCATGCGATATGTGGAACCGATGCACCTCCTCCTCCCTCGACAGCGACAC
CTCGCCATATGAGCTTTGGTACGACCGACGGCCGACATTCGACAACATCC
CCCCATTCGGGACCGTGGGATATCTACGACGGTCGAAGCCGGGGCACAAA
CTATCCCCCCGCAGGGTGAGCTGCATCATGCTCGGG
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