mRNA_H-elongata_contig73017.14980.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73017.14980.1
Unique NamemRNA_H-elongata_contig73017.14980.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.830e-57
Identity = 93/133 (69.92%), Postives = 111/133 (83.46%), Query Frame = 1
Query:   10 ITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
            I G++MY+AQV RYDI+YA  QLAR M+KP+KVHM AAKH L YLAG+ DFS+TYK+GG +LA FSD+NW N+PDNG+  SSY+ MLANA +SF+ GLQGLT  STME ELVA+AL MKEAVFCSNM+ ELGF
Sbjct:   98 IVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGF 230          
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 5.080e-57
Identity = 95/136 (69.85%), Postives = 113/136 (83.09%), Query Frame = 1
Query:    1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
            YQ I G++MY+AQV RYDI+YA  QLAR M+KP+KVHM AAKH L YLAG+ DFS+TYK+GG +LA FSD+NW N+PDNG+  SSY+ MLANA +SF+ GLQGLT  STME ELVA+AL MKEAVFCSNM+ ELGF
Sbjct:  218 YQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGF 353          
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 9.430e-55
Identity = 94/135 (69.63%), Postives = 113/135 (83.70%), Query Frame = 1
Query:    1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELG 405
            YQ I G++MY+AQV RYDI+YA  QLAR+M+KP+KVHM AAKH L YLAG+ DFS+TYK+GG +LA FSD+NW N+PDNG+  SSY+ MLANA +SF+ GLQGLT  STME ELVA+AL MKEAVFCSNM+ ELG
Sbjct:  439 YQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELG 573          
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 3.010e-54
Identity = 95/136 (69.85%), Postives = 113/136 (83.09%), Query Frame = 1
Query:    1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
            YQ I G++MY+AQV RYDI+YA  QLAR M+KP+KVHM AAKH L YLAG+ DFS+TYK+GG +LA FSD+NW N+PDNG+  SSY+ MLANA +SF+ GLQGLT  STME ELVA+AL MKEAVFCSNM+ ELGF
Sbjct:  778 YQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGF 913          
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.900e-53
Identity = 87/128 (67.97%), Postives = 103/128 (80.47%), Query Frame = 1
Query:   25 MYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
            MY+AQV RYDI+YA   LAR M+KP+KVH   AK  L YLAG+ DFS+TYK+GG +LA FSD+NW N+PDNG+  SSY+ MLANA +SF+ GLQGLT  STME ELVA+AL MKEAVFCSNM+ ELGF
Sbjct:    1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGF 128          
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 8.530e-52
Identity = 90/133 (67.67%), Postives = 110/133 (82.71%), Query Frame = 1
Query:   10 ITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
            I G+V+YLAQ+TRYDI+Y  +QLARAMS P+K+HMGAAKHLL YL+GS DFS+TYK+GG  L A SDANWGN+PDN +  SSYI+M++ A +SFK GLQ LT  ST+E ELVAAAL MKE +FC+NM+ ELGF
Sbjct:  475 IIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGF 607          
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.860e-51
Identity = 92/136 (67.65%), Postives = 111/136 (81.62%), Query Frame = 1
Query:    1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
            YQ I G++MY+AQV RYDI+YA  QLAR M+KP+KVHM AAKH L YLAG+ DFS+TYK+GG +LA FSD+NW N+PDNG+  SSY+ +LANA +SF+ GLQGLT  STME ELVA+AL M EAVF SNM+ ELGF
Sbjct: 1447 YQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGF 1582          
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 4.170e-49
Identity = 86/136 (63.24%), Postives = 110/136 (80.88%), Query Frame = 1
Query:    1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
            YQ I G ++YL+Q+ RYDI+YA +QLAR M+KP+K HMGAAK    YLAG+  F + YK+GG +L AF+D+NWGN+PDNG+  SS++ ML +A ++FK GLQ LTTQSTMEVELVAAAL +KEAVFCSN++ ELGF
Sbjct:  501 YQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGF 636          
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 2.630e-48
Identity = 88/136 (64.71%), Postives = 108/136 (79.41%), Query Frame = 1
Query:    1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
            YQ I G+VMYLAQVTRYDI+Y  +Q ARAMS P+K+HMGAAKHLL YL+GS DFS+TYK+GG  L A S+AN G++ DNG+  SSYI+M++ A  S K GLQ LT  ST+E ELVA+AL MKE +FC+NM+ ELGF
Sbjct:  559 YQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGF 694          
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 9.020e-43
Identity = 75/125 (60.00%), Postives = 93/125 (74.40%), Query Frame = 1
Query:    1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAV 375
            YQ I G +MY+AQV RYDI+YA  QLAR M KP+K+HM AAKH L Y+AG+ +F +TYK  G +LA FSD+NW N+PDNG+  S Y+ ML N  +S K G+QG T  STME EL+A+AL MKEAV
Sbjct:  309 YQGIVGCLMYIAQVLRYDIMYATGQLARPMEKPSKIHMVAAKHTLRYVAGTTNFRITYKSEGFKLATFSDSNWANNPDNGKSTSCYLTMLGNTPVSLKSGIQGPTAMSTMEAELIASALAMKEAV 433          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNV2_9PHAE1.830e-5769.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE5.080e-5769.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE9.430e-5569.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE3.010e-5469.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMK0_9PHAE3.900e-5367.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE8.530e-5267.67CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJH6_9PHAE1.860e-5167.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG39_9PHAE4.170e-4963.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE2.630e-4864.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPN4_9PHAE9.020e-4360.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73017contigH-elongata_contig73017:2492..2899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue1e-15
Seed eggNOG ortholog67593.Physo109406
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QHRW@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.9148967-UTR-H-elongata_contig73017:2491..25151622931131.9148967-UTR-H-elongata_contig73017:2491..2515Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73017 2492..2515 +
1691679711.297618-UTR-H-elongata_contig73017:2491..25151691679711.297618-UTR-H-elongata_contig73017:2491..2515Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73017 2492..2515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.9271414-CDS-H-elongata_contig73017:2515..28991622931131.9271414-CDS-H-elongata_contig73017:2515..2899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73017 2516..2899 +
1691679711.3096445-CDS-H-elongata_contig73017:2515..28991691679711.3096445-CDS-H-elongata_contig73017:2515..2899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73017 2516..2899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73017.14980.1prot_H-elongata_contig73017.14980.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73017 2516..2899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73017.14980.1

>prot_H-elongata_contig73017.14980.1 ID=prot_H-elongata_contig73017.14980.1|Name=mRNA_H-elongata_contig73017.14980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
MYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTY
KQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQS
TMEVELVAAALTMKEAVFCSNMILELGF
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mRNA from alignment at H-elongata_contig73017:2492..2899+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73017.14980.1 ID=mRNA_H-elongata_contig73017.14980.1|Name=mRNA_H-elongata_contig73017.14980.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig73017:2492..2899+ (Himanthalia elongata Himel1 dioecious)
TACCAGACAATTACTGGAGCCGTGATGTACCTTGCACAGGTCACCCGCTA CGATATTCTCTACGCGGTCAATCAGCTCGCGAGGGCCATGTCCAAGCCCG CGAAAGTTCACATGGGAGCGGCCAAGCACCTGCTTTGCTACTTGGCCGGA TCCGCAGACTTCTCTATGACTTATAAGCAAGGCGGGTTAAGGCTTGCTGC CTTCTCAGATGCCAACTGGGGCAACGACCCAGACAACGGCAGATTTCCGT CATCGTACATCGTGATGCTGGCCAACGCCTCGATCAGCTTCAAAGTGGGA CTGCAGGGACTGACCACACAGTCCACGATGGAGGTAGAGCTCGTGGCGGC AGCTCTGACAATGAAGGAGGCGGTGTTCTGCTCTAACATGATTCTGGAGC TTGGCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig73017:2492..2899+

>mRNA_H-elongata_contig73017.14980.1 ID=mRNA_H-elongata_contig73017.14980.1|Name=mRNA_H-elongata_contig73017.14980.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig73017:2492..2899+ (Himanthalia elongata Himel1 dioecious)
ATGTACCTTGCACAGGTCACCCGCTACGATATTCTCTACGCGGTCAATCA
GCTCGCGAGGGCCATGTCCAAGCCCGCGAAAGTTCACATGGGAGCGGCCA
AGCACCTGCTTTGCTACTTGGCCGGATCCGCAGACTTCTCTATGACTTAT
AAGCAAGGCGGGTTAAGGCTTGCTGCCTTCTCAGATGCCAACTGGGGCAA
CGACCCAGACAACGGCAGATTTCCGTCATCGTACATCGTGATGCTGGCCA
ACGCCTCGATCAGCTTCAAAGTGGGACTGCAGGGACTGACCACACAGTCC
ACGATGGAGGTAGAGCTCGTGGCGGCAGCTCTGACAATGAAGGAGGCGGT
GTTCTGCTCTAACATGATTCTGGAGCTTGGCTTCATGTACCTTGCACAGG
TCACCCGCTACGATATTCTCTACGCGGTCAATCAGCTCGCGAGGGCCATG
TCCAAGCCCGCGAAAGTTCACATGGGAGCGGCCAAGCACCTGCTTTGCTA
CTTGGCCGGATCCGCAGACTTCTCTATGACTTATAAGCAAGGCGGGTTAA
GGCTTGCTGCCTTCTCAGATGCCAACTGGGGCAACGACCCAGACAACGGC
AGATTTCCGTCATCGTACATCGTGATGCTGGCCAACGCCTCGATCAGCTT
CAAAGTGGGACTGCAGGGACTGACCACACAGTCCACGATGGAGGTAGAGC
TCGTGGCGGCAGCTCTGACAATGAAGGAGGCGGTGTTCTGCTCTAACATG
ATTCTGGAGCTTGGCTTC
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