mRNA_H-elongata_contig73017.14980.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE) HSP 1 Score: 189 bits (479), Expect = 1.830e-57 Identity = 93/133 (69.92%), Postives = 111/133 (83.46%), Query Frame = 1
Query: 10 ITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
I G++MY+AQV RYDI+YA QLAR M+KP+KVHM AAKH L YLAG+ DFS+TYK+GG +LA FSD+NW N+PDNG+ SSY+ MLANA +SF+ GLQGLT STME ELVA+AL MKEAVFCSNM+ ELGF
Sbjct: 98 IVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGF 230
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 192 bits (488), Expect = 5.080e-57 Identity = 95/136 (69.85%), Postives = 113/136 (83.09%), Query Frame = 1
Query: 1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
YQ I G++MY+AQV RYDI+YA QLAR M+KP+KVHM AAKH L YLAG+ DFS+TYK+GG +LA FSD+NW N+PDNG+ SSY+ MLANA +SF+ GLQGLT STME ELVA+AL MKEAVFCSNM+ ELGF
Sbjct: 218 YQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGF 353
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 191 bits (484), Expect = 9.430e-55 Identity = 94/135 (69.63%), Postives = 113/135 (83.70%), Query Frame = 1
Query: 1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELG 405
YQ I G++MY+AQV RYDI+YA QLAR+M+KP+KVHM AAKH L YLAG+ DFS+TYK+GG +LA FSD+NW N+PDNG+ SSY+ MLANA +SF+ GLQGLT STME ELVA+AL MKEAVFCSNM+ ELG
Sbjct: 439 YQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELG 573
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 192 bits (488), Expect = 3.010e-54 Identity = 95/136 (69.85%), Postives = 113/136 (83.09%), Query Frame = 1
Query: 1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
YQ I G++MY+AQV RYDI+YA QLAR M+KP+KVHM AAKH L YLAG+ DFS+TYK+GG +LA FSD+NW N+PDNG+ SSY+ MLANA +SF+ GLQGLT STME ELVA+AL MKEAVFCSNM+ ELGF
Sbjct: 778 YQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGF 913
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 176 bits (445), Expect = 3.900e-53 Identity = 87/128 (67.97%), Postives = 103/128 (80.47%), Query Frame = 1
Query: 25 MYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
MY+AQV RYDI+YA LAR M+KP+KVH AK L YLAG+ DFS+TYK+GG +LA FSD+NW N+PDNG+ SSY+ MLANA +SF+ GLQGLT STME ELVA+AL MKEAVFCSNM+ ELGF
Sbjct: 1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGF 128
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 185 bits (470), Expect = 8.530e-52 Identity = 90/133 (67.67%), Postives = 110/133 (82.71%), Query Frame = 1
Query: 10 ITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
I G+V+YLAQ+TRYDI+Y +QLARAMS P+K+HMGAAKHLL YL+GS DFS+TYK+GG L A SDANWGN+PDN + SSYI+M++ A +SFK GLQ LT ST+E ELVAAAL MKE +FC+NM+ ELGF
Sbjct: 475 IIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGF 607
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 184 bits (468), Expect = 1.860e-51 Identity = 92/136 (67.65%), Postives = 111/136 (81.62%), Query Frame = 1
Query: 1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
YQ I G++MY+AQV RYDI+YA QLAR M+KP+KVHM AAKH L YLAG+ DFS+TYK+GG +LA FSD+NW N+PDNG+ SSY+ +LANA +SF+ GLQGLT STME ELVA+AL M EAVF SNM+ ELGF
Sbjct: 1447 YQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGF 1582
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 176 bits (447), Expect = 4.170e-49 Identity = 86/136 (63.24%), Postives = 110/136 (80.88%), Query Frame = 1
Query: 1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
YQ I G ++YL+Q+ RYDI+YA +QLAR M+KP+K HMGAAK YLAG+ F + YK+GG +L AF+D+NWGN+PDNG+ SS++ ML +A ++FK GLQ LTTQSTMEVELVAAAL +KEAVFCSN++ ELGF
Sbjct: 501 YQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGF 636
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 174 bits (442), Expect = 2.630e-48 Identity = 88/136 (64.71%), Postives = 108/136 (79.41%), Query Frame = 1
Query: 1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAVFCSNMILELGF 408
YQ I G+VMYLAQVTRYDI+Y +Q ARAMS P+K+HMGAAKHLL YL+GS DFS+TYK+GG L A S+AN G++ DNG+ SSYI+M++ A S K GLQ LT ST+E ELVA+AL MKE +FC+NM+ ELGF
Sbjct: 559 YQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGF 694
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE) HSP 1 Score: 155 bits (391), Expect = 9.020e-43 Identity = 75/125 (60.00%), Postives = 93/125 (74.40%), Query Frame = 1
Query: 1 YQTITGAVMYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYKQGGLRLAAFSDANWGNDPDNGRFPSSYIVMLANASISFKVGLQGLTTQSTMEVELVAAALTMKEAV 375
YQ I G +MY+AQV RYDI+YA QLAR M KP+K+HM AAKH L Y+AG+ +F +TYK G +LA FSD+NW N+PDNG+ S Y+ ML N +S K G+QG T STME EL+A+AL MKEAV
Sbjct: 309 YQGIVGCLMYIAQVLRYDIMYATGQLARPMEKPSKIHMVAAKHTLRYVAGTTNFRITYKSEGFKLATFSDSNWANNPDNGKSTSCYLTMLGNTPVSLKSGIQGPTAMSTMEAELIASALAMKEAV 433 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73017.14980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73017.14980.1 >prot_H-elongata_contig73017.14980.1 ID=prot_H-elongata_contig73017.14980.1|Name=mRNA_H-elongata_contig73017.14980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp MYLAQVTRYDILYAVNQLARAMSKPAKVHMGAAKHLLCYLAGSADFSMTYback to top mRNA from alignment at H-elongata_contig73017:2492..2899+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73017.14980.1 ID=mRNA_H-elongata_contig73017.14980.1|Name=mRNA_H-elongata_contig73017.14980.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig73017:2492..2899+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73017:2492..2899+ >mRNA_H-elongata_contig73017.14980.1 ID=mRNA_H-elongata_contig73017.14980.1|Name=mRNA_H-elongata_contig73017.14980.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig73017:2492..2899+ (Himanthalia elongata Himel1 dioecious)back to top |