mRNA_H-elongata_contig73017.14979.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73017.14979.1
Unique NamemRNA_H-elongata_contig73017.14979.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.600e-30
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIETS 324
            MLADS  PS +WG+L  TA YL NRTPH  L   TP+K L G ++ L HL  +GAR FVH +  ++KL+  AWEG++ GYS +SKSYR++N +T RV ESRNV FIET+
Sbjct:  751 MLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETT 859
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BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.600e-30
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIETS 324
            MLADS  PS +WG+L  TA YL NRTPH  L   TP+K L G ++ L HL  +GAR FVH +  ++KL+  AWEG++ GYS +SKSYR++N +T RV ESRNV FIET+
Sbjct:  657 MLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETN 765
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.620e-30
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIETS 324
            MLADS  PS +WG+L  TA YL NRTPH  L   TP+K L G ++ L HL  +GAR FVH +  ++KL+  AWEG++ GYS +SKSYR++N +T RV ESRNV FIET+
Sbjct:  980 MLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETT 1088
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.570e-29
Identity = 59/108 (54.63%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIET 321
            +LADS  P+ +WG+L  TA YL NR PH  L+  TP+K L+G+++ L HL  IG+R FVH +  +RKLE  AWEG++ GYS +SKSYR++N +T RV  SRNV FIET
Sbjct:  221 LLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIET 328
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 3.310e-29
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIETS 324
            MLADS  PS +WG L  TA YL NRTPH  L   TP+K L G ++ L H   +GAR FVH +  ++KL+  AWEG++ GYS +SKSYR++N +T RV ESRNV FIET+
Sbjct:    7 MLADSTLPSLLWGKLMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHPRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETT 115
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 8.020e-28
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIET 321
            +LADS  P+ +WG+L  TA YL NR PH+ L+  TP+K L+G+++ L HL  IG+R FVH +  +RKLE  AWEG++ GYS +SKSYR++N +T RV  SR V FI+T
Sbjct:  690 LLADSTLPNFLWGELIQTAVYLSNRVPHEALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRIVVFIKT 797
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.750e-27
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKDSRK-LEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIET 321
            +L D  FP SMWG+L +TAAYL NR+PH  L   TP+  LH +  DLS L  IGAR FVH +  RK L+  A+EGK+ G+  +S++YRV NP    VVESRNVTFIE+
Sbjct:  223 LLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSRLRVIGARAFVHQERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5L8D5_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D5_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.990e-27
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKDSRK-LEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIET 321
            +L D  FP SMWG+L +TAAYL NR+PH  L   TP+  LH +  DLS L  IGAR FVH +  RK L+  A+EGK+ G+  +S++YRV NP    VVESRNVTFIE+
Sbjct:  176 LLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSELRIIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 283
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5JRS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS9_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 7.110e-27
Identity = 56/108 (51.85%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIET 321
            ++ D  FP ++WG+L MTA  L NR+PH VL   TP+  ++G+E+DLS L  IGAR FV+ +  ++KL    +EGK+ G+S +SK+YR++NP T  VVESRNVTFIET
Sbjct: 1102 LMEDGAFPPTLWGELMMTAVDLSNRSPHSVLGGVTPYFKMYGKEADLSRLRVIGARSFVNYERYTKKLSDRTFEGKLCGFSRDSKTYRIYNPATGNVVESRNVTFIET 1209
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5KLG0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 8.550e-27
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKDSRK-LEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIET 321
            +L D  FP SMWG+L +TAAYL NR+PH  L   TP+  LH +  DLS L  IGAR FVH +  RK L+  A+EGK+ G+  +S++YRV NP    VVESRNVTFIE+
Sbjct:  114 LLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE1.600e-3055.96Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE1.600e-3055.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.620e-3055.96Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KL37_9PHAE2.570e-2954.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMG0_9PHAE3.310e-2955.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIN1_9PHAE8.020e-2852.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRJ1_9PHAE2.750e-2754.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L8D5_9PHAE4.990e-2754.63Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JRS9_9PHAE7.110e-2751.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KLG0_9PHAE8.550e-2754.63Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73017contigH-elongata_contig73017:1507..1830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score89.4
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog126957.SMAR007140-PA
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs396RX@33154,3C537@33208,3DK3A@33213,423UB@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.8800085-CDS-H-elongata_contig73017:1506..18301622931131.8800085-CDS-H-elongata_contig73017:1506..1830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73017 1507..1830 +
1691679711.2870476-CDS-H-elongata_contig73017:1506..18301691679711.2870476-CDS-H-elongata_contig73017:1506..1830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73017 1507..1830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73017.14979.1prot_H-elongata_contig73017.14979.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73017 1507..1830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73017.14979.1

>prot_H-elongata_contig73017.14979.1 ID=prot_H-elongata_contig73017.14979.1|Name=mRNA_H-elongata_contig73017.14979.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHL
HAIGARIFVHMKDSRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESR
NVTFIETS
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mRNA from alignment at H-elongata_contig73017:1507..1830+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73017.14979.1 ID=mRNA_H-elongata_contig73017.14979.1|Name=mRNA_H-elongata_contig73017.14979.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig73017:1507..1830+ (Himanthalia elongata Himel1 dioecious)
ATGCTCGCAGACAGCGGCTTCCCATCGTCCATGTGGGGGGACCTGTTCAT
GACGGCTGCGTACCTCAAGAACAGGACTCCGCACAAGGTGCTCAAGATGG
AGACGCCGTTCAAGATGCTTCACGGTGAGGAATCCGACCTCTCGCACCTT
CACGCTATCGGAGCCAGAATCTTTGTGCACATGAAGGACTCCAGAAAGCT
TGAAGTCGCGGCCTGGGAAGGGAAGGTGTACGGCTACAGCGAGGAGAGCA
AATCCTACCGAGTCTGGAACCCAAAGACTTACCGCGTCGTGGAAAGCAGG
AACGTCACCTTTATCGAGACATCG
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Coding sequence (CDS) from alignment at H-elongata_contig73017:1507..1830+

>mRNA_H-elongata_contig73017.14979.1 ID=mRNA_H-elongata_contig73017.14979.1|Name=mRNA_H-elongata_contig73017.14979.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig73017:1507..1830+ (Himanthalia elongata Himel1 dioecious)
ATGCTCGCAGACAGCGGCTTCCCATCGTCCATGTGGGGGGACCTGTTCAT
GACGGCTGCGTACCTCAAGAACAGGACTCCGCACAAGGTGCTCAAGATGG
AGACGCCGTTCAAGATGCTTCACGGTGAGGAATCCGACCTCTCGCACCTT
CACGCTATCGGAGCCAGAATCTTTGTGCACATGAAGGACTCCAGAAAGCT
TGAAGTCGCGGCCTGGGAAGGGAAGGTGTACGGCTACAGCGAGGAGAGCA
AATCCTACCGAGTCTGGAACCCAAAGACTTACCGCGTCGTGGAAAGCAGG
AACGTCACCTTTATCGAGACATCGATGCTCGCAGACAGCGGCTTCCCATC
GTCCATGTGGGGGGACCTGTTCATGACGGCTGCGTACCTCAAGAACAGGA
CTCCGCACAAGGTGCTCAAGATGGAGACGCCGTTCAAGATGCTTCACGGT
GAGGAATCCGACCTCTCGCACCTTCACGCTATCGGAGCCAGAATCTTTGT
GCACATGAAGGACTCCAGAAAGCTTGAAGTCGCGGCCTGGGAAGGGAAGG
TGTACGGCTACAGCGAGGAGAGCAAATCCTACCGAGTCTGGAACCCAAAG
ACTTACCGCGTCGTGGAAAGCAGGAACGTCACCTTTATCGAGACATCG
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