prot_H-elongata_contig73017.14979.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig73017.14979.1
Unique Nameprot_H-elongata_contig73017.14979.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length108
Homology
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.600e-30
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 0 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIETS 108
            MLADS  PS +WG+L  TA YL NRTPH  L   TP+K L G ++ L HL  +GAR FVH +  ++KL+  AWEG++ GYS +SKSYR++N +T RV ESRNV FIET+
Sbjct:  751 MLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETT 859
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.600e-30
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 0 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIETS 108
            MLADS  PS +WG+L  TA YL NRTPH  L   TP+K L G ++ L HL  +GAR FVH +  ++KL+  AWEG++ GYS +SKSYR++N +T RV ESRNV FIET+
Sbjct:  657 MLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETN 765
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.620e-30
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 0 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIETS 108
            MLADS  PS +WG+L  TA YL NRTPH  L   TP+K L G ++ L HL  +GAR FVH +  ++KL+  AWEG++ GYS +SKSYR++N +T RV ESRNV FIET+
Sbjct:  980 MLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETT 1088
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.570e-29
Identity = 59/108 (54.63%), Postives = 78/108 (72.22%), Query Frame = 0 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIET 107
            +LADS  P+ +WG+L  TA YL NR PH  L+  TP+K L+G+++ L HL  IG+R FVH +  +RKLE  AWEG++ GYS +SKSYR++N +T RV  SRNV FIET
Sbjct:  221 LLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIET 328
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 3.310e-29
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 0 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIETS 108
            MLADS  PS +WG L  TA YL NRTPH  L   TP+K L G ++ L H   +GAR FVH +  ++KL+  AWEG++ GYS +SKSYR++N +T RV ESRNV FIET+
Sbjct:    7 MLADSTLPSLLWGKLMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHPRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETT 115
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 8.020e-28
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 0 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIET 107
            +LADS  P+ +WG+L  TA YL NR PH+ L+  TP+K L+G+++ L HL  IG+R FVH +  +RKLE  AWEG++ GYS +SKSYR++N +T RV  SR V FI+T
Sbjct:  690 LLADSTLPNFLWGELIQTAVYLSNRVPHEALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRIVVFIKT 797
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.750e-27
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = 0 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKDSRK-LEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIET 107
            +L D  FP SMWG+L +TAAYL NR+PH  L   TP+  LH +  DLS L  IGAR FVH +  RK L+  A+EGK+ G+  +S++YRV NP    VVESRNVTFIE+
Sbjct:  223 LLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSRLRVIGARAFVHQERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5L8D5_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D5_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.990e-27
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = 0 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKDSRK-LEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIET 107
            +L D  FP SMWG+L +TAAYL NR+PH  L   TP+  LH +  DLS L  IGAR FVH +  RK L+  A+EGK+ G+  +S++YRV NP    VVESRNVTFIE+
Sbjct:  176 LLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSELRIIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 283
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5JRS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS9_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 7.110e-27
Identity = 56/108 (51.85%), Postives = 78/108 (72.22%), Query Frame = 0 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKD-SRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIET 107
            ++ D  FP ++WG+L MTA  L NR+PH VL   TP+  ++G+E+DLS L  IGAR FV+ +  ++KL    +EGK+ G+S +SK+YR++NP T  VVESRNVTFIET
Sbjct: 1102 LMEDGAFPPTLWGELMMTAVDLSNRSPHSVLGGVTPYFKMYGKEADLSRLRVIGARSFVNYERYTKKLSDRTFEGKLCGFSRDSKTYRIYNPATGNVVESRNVTFIET 1209
[Close]
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Match: A0A6H5KLG0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 8.550e-27
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = 0 
Query:    1 MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHLHAIGARIFVHMKDSRK-LEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESRNVTFIET 107
            +L D  FP SMWG+L +TAAYL NR+PH  L   TP+  LH +  DLS L  IGAR FVH +  RK L+  A+EGK+ G+  +S++YRV NP    VVESRNVTFIE+
Sbjct:  114 LLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73017.14979.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE1.600e-3055.96Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE1.600e-3055.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.620e-3055.96Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KL37_9PHAE2.570e-2954.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMG0_9PHAE3.310e-2955.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIN1_9PHAE8.020e-2852.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRJ1_9PHAE2.750e-2754.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L8D5_9PHAE4.990e-2754.63Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JRS9_9PHAE7.110e-2751.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KLG0_9PHAE8.550e-2754.63Integrase catalytic domain-containing protein (Fra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..106
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 1..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73017contigH-elongata_contig73017:1507..1830 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73017.14979.1mRNA_H-elongata_contig73017.14979.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig73017 1507..1830 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig73017.14979.1 ID=prot_H-elongata_contig73017.14979.1|Name=mRNA_H-elongata_contig73017.14979.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MLADSGFPSSMWGDLFMTAAYLKNRTPHKVLKMETPFKMLHGEESDLSHL
HAIGARIFVHMKDSRKLEVAAWEGKVYGYSEESKSYRVWNPKTYRVVESR
NVTFIETS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like