mRNA_H-elongata_contig72969.14975.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72969.14975.1
Unique NamemRNA_H-elongata_contig72969.14975.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72969.14975.1 vs. uniprot
Match: D7FKP6_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP6_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 3.730e-49
Identity = 87/132 (65.91%), Postives = 103/132 (78.03%), Query Frame = 1
Query:    1 MSTSLDAVDLGSNTAQDVSAGQSHTCVLLTSGNVTCFGYNYYGQLGLGDRTTRGLSPSDMGENLGLVNLGSNRTASRIGCGQHHTCAVLDDASLKCWGINNKGMLGLGDTKNRGDEDIELGDNLPTVDLGTG 396
            MS++L  VDLG NT   V+AGQSHTCVLL SGNV C+G+N YGQLGLGD   RG S SDMGE L +V+LG+ RTA+ I CGQ+HTCA+LD  +LKCWG N+ G LGLGDT NRG+ +  +GDNLP VDLGTG
Sbjct:   99 MSSNLPEVDLGGNTVLQVAAGQSHTCVLLASGNVACWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLGTGRTATHIACGQYHTCAILDIGALKCWGYNSFGALGLGDTDNRGEANDTMGDNLPFVDLGTG 230          
BLAST of mRNA_H-elongata_contig72969.14975.1 vs. uniprot
Match: A0A6H5JPT1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT1_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.390e-48
Identity = 86/132 (65.15%), Postives = 102/132 (77.27%), Query Frame = 1
Query:    1 MSTSLDAVDLGSNTAQDVSAGQSHTCVLLTSGNVTCFGYNYYGQLGLGDRTTRGLSPSDMGENLGLVNLGSNRTASRIGCGQHHTCAVLDDASLKCWGINNKGMLGLGDTKNRGDEDIELGDNLPTVDLGTG 396
            MS++L  VDLG NT   V+AGQSHTCVLL SG+V C+G+N YGQLGLGD   RG S SDMGE L +V+LG+ RTA+ I CGQ+HTCA+LD  SLKCWG NN G LGLGDT +RG  +  +GD LP+VDLGTG
Sbjct:    1 MSSNLPQVDLGGNTVLQVAAGQSHTCVLLASGDVACWGFNEYGQLGLGDTQHRGTSSSDMGEGLAVVDLGTGRTATHIACGQYHTCAILDIGSLKCWGRNNYGALGLGDTDDRGQTNDTMGDQLPSVDLGTG 132          
BLAST of mRNA_H-elongata_contig72969.14975.1 vs. uniprot
Match: A0A3M1P0V4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1P0V4_9BACT)

HSP 1 Score: 148 bits (374), Expect = 2.500e-42
Identity = 73/133 (54.89%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    1 MSTSLDAVDLGSNTAQDVSAGQSHTCVLLTSGNVTCFGYNYYGQLGLGDRTTRGLSPSDMGENLGLVNLGSNRTASRIGCGQHHTCAVLDDASLKCWGINNKGMLGLGDTKNRGDEDIELGDNLPTVDLGTGK 399
            M T+L AVDLG+     V AG +HTC LL +  V C+G N  GQLGLGD+ TRG  P +MG +L  ++LG+ RT + I  G   TCA LD+A++KCWG N+ G LGLGDT +RGD   E+GDNLP VDLGTG+
Sbjct:   83 MGTNLPAVDLGTGVISGVEAGSTHTCALLDNATVKCWGSNVNGQLGLGDKLTRGDDPGEMGNSLPPIDLGAGRTPTAIAAGGSFTCARLDNATVKCWGANSDGQLGLGDTSDRGDAPGEMGDNLPAVDLGTGR 215          
BLAST of mRNA_H-elongata_contig72969.14975.1 vs. uniprot
Match: A0A383CPK5_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383CPK5_9ZZZZ)

HSP 1 Score: 147 bits (370), Expect = 1.910e-41
Identity = 73/134 (54.48%), Postives = 94/134 (70.15%), Query Frame = 1
Query:    1 MSTSLDAVDLGSN-TAQDVSAGQSHTCVLLTSGNVTCFGYNYYGQLGLGDRTTRGLSPSDMGENLGLVNLGSNRTASRIGCGQHHTCAVLDDASLKCWGINNKGMLGLGDTKNRGDEDIELGDNLPTVDLGTGK 399
            M  SL  VDLG+  TA+ + AG +HTC +L + +V C+G N  GQLGLGD  +RG + S+MG++L +VN+GS RTA  I  G  HTCA+LD+A +KCWG N  G LGLGD  NRGD   E+G NL TVDLG+G+
Sbjct:   87 MGDSLPVVDLGTGKTARAIEAGDNHTCAILDNASVKCWGSNASGQLGLGDTDSRGDNSSEMGDSLPIVNMGSGRTAKAIAAGYAHTCAILDNAYVKCWGSNTSGQLGLGDINNRGDNSSEMGGNLTTVDLGSGR 220          
BLAST of mRNA_H-elongata_contig72969.14975.1 vs. uniprot
Match: A0A017SY21_9DELT (Uncharacterized protein n=2 Tax=Chondromyces apiculatus TaxID=51 RepID=A0A017SY21_9DELT)

HSP 1 Score: 155 bits (391), Expect = 2.790e-41
Identity = 80/134 (59.70%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    1 MSTSLDAVDLGSN-TAQDVSAGQSHTCVLLTSGNVTCFGYNYYGQLGLGDRTTRGLSPSDMGENLGLVNLGSNRTASRIGCGQHHTCAVLDDASLKCWGINNKGMLGLGDTKNRGDEDIELGDNLPTVDLGTGK 399
            M  SL AV LG+  +A  VSA   HTCVLL  G+V C+GYN YGQLGLG   +RG SPSDMG NL  VNLG+ +TA+ +  G  +TCAVL+D S+KCWG N+ G LGLGDT NRG     +GDNLP V+LGTGK
Sbjct:  431 MGDSLPAVALGTGQSAIAVSAAGGHTCVLLNGGSVKCWGYNTYGQLGLGSPASRGTSPSDMGNNLPAVNLGTGKTATLVSAGSQYTCAVLNDGSVKCWGNNDYGQLGLGDTFNRGTGSTSMGDNLPVVNLGTGK 564          
BLAST of mRNA_H-elongata_contig72969.14975.1 vs. uniprot
Match: A0A835T669_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T669_9CHLO)

HSP 1 Score: 147 bits (370), Expect = 2.930e-39
Identity = 72/134 (53.73%), Postives = 93/134 (69.40%), Query Frame = 1
Query:    1 MSTSLDAVDLGSN-TAQDVSAGQSHTCVLLTSGNVTCFGYNYYGQLGLGDRTTRGLSPSDMGENLGLVNLGSNRTASRIGCGQHHTCAVLDDASLKCWGINNKGMLGLGDTKNRGDEDIELGDNLPTVDLGTGK 399
            M  +L A+ LG+  TA  +S G  HTC LL +G+V C+GYN YGQLGLGD + RG  P +MG+ L  + LG+ RTA+ I  G +HTCA+LD+ S+KCWG N  G LGLGDT +RGD   E+GD LP + LGTG+
Sbjct:  149 MGDTLPAITLGTGRTATAISVGGIHTCALLDNGSVKCWGYNAYGQLGLGDTSDRGDGPGEMGDTLPAITLGTGRTAAAISVGGYHTCALLDNGSIKCWGYNAYGQLGLGDTSSRGDGPGEMGDTLPAITLGTGR 282          
BLAST of mRNA_H-elongata_contig72969.14975.1 vs. uniprot
Match: L7UHS0_MYXSD (RCC1 repeat-containing protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) TaxID=1278073 RepID=L7UHS0_MYXSD)

HSP 1 Score: 144 bits (362), Expect = 6.720e-39
Identity = 71/134 (52.99%), Postives = 94/134 (70.15%), Query Frame = 1
Query:    1 MSTSLDAVDLGSN-TAQDVSAGQSHTCVLLTSGNVTCFGYNYYGQLGLGDRTTRGLSPSDMGENLGLVNLGSNRTASRIGCGQHHTCAVLDDASLKCWGINNKGMLGLGDTKNRGDEDIELGDNLPTVDLGTGK 399
            M  +L  V+LG+  TA+ ++AG++H+C +L  G V C+G N YGQLGLGD+ +RG+ P +MG+ L  V LG  RTA+ I  G  HTCA+LDD ++KCWG N  G LGLGD   RGD   E+GD LP+VDLGTG+
Sbjct:  121 MGDALPTVNLGTKRTAKAITAGRAHSCAILDDGAVKCWGGNEYGQLGLGDKASRGVEPDEMGDALPEVKLGVGRTATAIAAGNLHTCAILDDGAVKCWGDNGYGRLGLGDKSGRGDAPGEMGDALPSVDLGTGR 254          
BLAST of mRNA_H-elongata_contig72969.14975.1 vs. uniprot
Match: A0A7S0YYL7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YYL7_9CRYP)

HSP 1 Score: 140 bits (353), Expect = 1.850e-38
Identity = 74/136 (54.41%), Postives = 92/136 (67.65%), Query Frame = 1
Query:    1 MSTSLDAVDLGSNTAQDVSAGQSHTCVLLTSGNVTCFGYNYYGQLGLGDRTTRGLSPSDMGENLGLVNLGSNRTASRIGCGQHHTCAVLDDASLKCWGINNKGMLGLGDTKNRGDEDIELGDNLPTVDLGTGKGVC 408
            M  +L  VD+G + +  +S GQ HTCV+L  G+V C+GYN+ GQLG+GDR TRG S   MG  L  V LGS RTA  +  G  HTCA+LDD ++KCWG N  G LGLGDT NRGD +  +GD LP+VDLG G+ V 
Sbjct:    2 MGDALPVVDVGGSVSS-ISVGQLHTCVVLVGGSVKCWGYNHRGQLGVGDRMTRGDSNGQMGAALPSVYLGSGRTAVSVSVGNSHTCAMLDDQTVKCWGENTFGQLGLGDTVNRGDGNGAMGDALPSVDLG-GRAVA 135          
BLAST of mRNA_H-elongata_contig72969.14975.1 vs. uniprot
Match: UPI001056704E (hypothetical protein n=1 Tax=Legionella yabuuchiae TaxID=376727 RepID=UPI001056704E)

HSP 1 Score: 145 bits (366), Expect = 3.000e-38
Identity = 74/134 (55.22%), Postives = 94/134 (70.15%), Query Frame = 1
Query:    1 MSTSLDAVDLGSN-TAQDVSAGQSHTCVLLTSGNVTCFGYNYYGQLGLGDRTTRGLSPSDMGENLGLVNLGSNRTASRIGCGQHHTCAVLDDASLKCWGINNKGMLGLGDTKNRGDEDIELGDNLPTVDLGTGK 399
            M  +L AVDLG+  TA+ ++AG    C LL +  V C+G N  GQLGLGD T RG    +MG+NL  VNLG+ +TA ++  G  H CA+L+D SLKCWG+N+ G LGLGDT NRGD   E+GDNLPTV+LGTG+
Sbjct:  336 MGDNLPAVDLGTGRTAKQLTAGGGFNCTLLDNDTVKCWGRNTSGQLGLGDTTNRGDGAGEMGDNLPAVNLGTGKTAIKLRAGDAHACAILNDNSLKCWGLNDSGQLGLGDTINRGDGPGEMGDNLPTVNLGTGR 469          
BLAST of mRNA_H-elongata_contig72969.14975.1 vs. uniprot
Match: A0A7C7JGX1_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7JGX1_9FLAO)

HSP 1 Score: 140 bits (354), Expect = 6.810e-38
Identity = 66/131 (50.38%), Postives = 95/131 (72.52%), Query Frame = 1
Query:    1 MSTSLDAVDLGSN-TAQDVSAGQSHTCVLLTSGNVTCFGYNYYGQLGLGDRTTRGLSPSDMGENLGLVNLGSNRTASRIGCGQHHTCAVLDDASLKCWGINNKGMLGLGDTKNRGDEDIELGDNLPTVDLG 390
            M  +L  ++LG N TA+ ++AG+SHTC LL +  + C+G+N YGQLG GD T+RG  P +MG+NL  +NLG N TA+ I  G++HTCA+ D+ ++KCWG+N+ G LGLGDT  RGD + ++GD L  ++LG
Sbjct:   37 MGVNLQHIELGGNHTAKSIAAGESHTCALLDNNKIKCWGWNDYGQLGQGDTTSRGDGPGEMGDNLNPINLGENLTATSIVAGEYHTCALFDNNTIKCWGLNDFGQLGLGDTTFRGDGNGKMGDKLNPINLG 167          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72969.14975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKP6_ECTSI3.730e-4965.91Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JPT1_9PHAE2.390e-4865.15Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A3M1P0V4_9BACT2.500e-4254.89Uncharacterized protein (Fragment) n=1 Tax=Bactero... [more]
A0A383CPK5_9ZZZZ1.910e-4154.48Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A017SY21_9DELT2.790e-4159.70Uncharacterized protein n=2 Tax=Chondromyces apicu... [more]
A0A835T669_9CHLO2.930e-3953.73Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
L7UHS0_MYXSD6.720e-3952.99RCC1 repeat-containing protein n=1 Tax=Myxococcus ... [more]
A0A7S0YYL7_9CRYP1.850e-3854.41Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
UPI001056704E3.000e-3855.22hypothetical protein n=1 Tax=Legionella yabuuchiae... [more]
A0A7C7JGX1_9FLAO6.810e-3850.38Uncharacterized protein n=1 Tax=Flavobacteriales b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72969contigH-elongata_contig72969:924..1881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue3.9e-43
Seed eggNOG ortholog2880.D7FKP6
Preferred nameRCCD1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0515@1,COG5184@1,KOG0192@2759,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size435
Cds size435
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72969.14975.1prot_H-elongata_contig72969.14975.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72969 924..1881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.5056477-CDS-H-elongata_contig72969:923..10471622931131.5056477-CDS-H-elongata_contig72969:923..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72969 924..1047 -
1691679711.0715332-CDS-H-elongata_contig72969:923..10471691679711.0715332-CDS-H-elongata_contig72969:923..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72969 924..1047 -
1622931131.522878-CDS-H-elongata_contig72969:1239..14181622931131.522878-CDS-H-elongata_contig72969:1239..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72969 1240..1418 -
1691679711.0843961-CDS-H-elongata_contig72969:1239..14181691679711.0843961-CDS-H-elongata_contig72969:1239..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72969 1240..1418 -
1622931131.535993-CDS-H-elongata_contig72969:1749..18811622931131.535993-CDS-H-elongata_contig72969:1749..1881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72969 1750..1881 -
1691679711.0948434-CDS-H-elongata_contig72969:1749..18811691679711.0948434-CDS-H-elongata_contig72969:1749..1881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72969 1750..1881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72969.14975.1

>prot_H-elongata_contig72969.14975.1 ID=prot_H-elongata_contig72969.14975.1|Name=mRNA_H-elongata_contig72969.14975.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MSTSLDAVDLGSNTAQDVSAGQSHTCVLLTSGNVTCFGYNYYGQLGLGDR
TTRGLSPSDMGENLGLVNLGSNRTASRIGCGQHHTCAVLDDASLKCWGIN
NKGMLGLGDTKNRGDEDIELGDNLPTVDLGTGKGVCWFELFVHEH
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mRNA from alignment at H-elongata_contig72969:924..1881-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72969.14975.1 ID=mRNA_H-elongata_contig72969.14975.1|Name=mRNA_H-elongata_contig72969.14975.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=958bp|location=Sequence derived from alignment at H-elongata_contig72969:924..1881- (Himanthalia elongata Himel1 dioecious)
ATGAGCACTAGTTTAGATGCGGTGGACTTGGGCAGCAATACAGCGCAAGA TGTCTCGGCAGGGCAGAGTCACACCTGCGTCCTTTTAACCTCGGGGAACG TTACCTGCTTCGGGTACAATTATTACGGGCAGGTAAGTAAAATGCGGCGT CAGTCGTGACGTCATATTCACTTTCAGTAAAACGCGACAACGTCGTTCTC GTTTCTGTCTGACATGCGTCGCCGCTGTGCGTTTGGGATTTCTGGGGGTT CAAGAGGATATAATGCACCAGTAGAGAATGCAGCTATGTGAATACATGTT ATCGTAAGAAATGTGAAGACAATATACCTAAAGTACCGATTTCAAAATGT ACAACTCAAGGAGGAACTCTTCGTTGACGTGTCTGAGCGATGTGCGTCCA AAAGTAAAACCATCGCGAAGTCCGATTTTTGATATGCTACAATTTCTGCA ACTATCCGGACAGCTCGGCTTGGGAGACAGGACTACGAGAGGACTCTCGC CGTCGGACATGGGCGAGAATCTCGGGCTGGTGAACCTCGGATCGAATAGA ACTGCGAGTCGTATTGGTTGCGGGCAACATCACACGTGCGCGGTGCTCGA TGACGCTTCGCTTAAGTGCTGGGGGATAAACAACAAAGGGATGTAAGGCT CGGCTAAAGGAACAAGACTTGAAAGCTTTTTCGCGATACCGCCGCATCTA CGCCGTCATATATCATGCGCTTGGTTTTTCTTTGGTAGAGACCCAGCCCC ACGCAAGTACGAATATATCAAGCAGGCTATGAACTTCTTGTTTTTTTTCC GGGACATAAGTACGCCTTATGCCCCGCGGTACAGGCTCGGCTTGGGAGAC ACCAAAAATCGCGGGGATGAAGACATCGAGCTAGGCGATAACCTTCCAAC GGTCGACCTGGGGACCGGTAAGGGGGTGTGTTGGTTCGAGCTCTTCGTGC ATGAACAT
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Coding sequence (CDS) from alignment at H-elongata_contig72969:924..1881-

>mRNA_H-elongata_contig72969.14975.1 ID=mRNA_H-elongata_contig72969.14975.1|Name=mRNA_H-elongata_contig72969.14975.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig72969:924..1881- (Himanthalia elongata Himel1 dioecious)
ATGAGCACTAGTTTAGATGCGGTGGACTTGGGCAGCAATACAGCGCAAGA
TGTCTCGGCAGGGCAGAGTCACACCTGCGTCCTTTTAACCTCGGGGAACG
TTACCTGCTTCGGGTACAATTATTACGGGCAGATGAGCACTAGTTTAGAT
GCGGTGGACTTGGGCAGCAATACAGCGCAAGATGTCTCGGCAGGGCAGAG
TCACACCTGCGTCCTTTTAACCTCGGGGAACGTTACCTGCTTCGGGTACA
ATTATTACGGGCAGCTCGGCTTGGGAGACAGGACTACGAGAGGACTCTCG
CCGTCGGACATGGGCGAGAATCTCGGGCTGGTGAACCTCGGATCGAATAG
AACTGCGAGTCGTATTGGTTGCGGGCAACATCACACGTGCGCGGTGCTCG
ATGACGCTTCGCTTAAGTGCTGGGGGATAAACAACAAAGGGATCTCGGCT
TGGGAGACAGGACTACGAGAGGACTCTCGCCGTCGGACATGGGCGAGAAT
CTCGGGCTGGTGAACCTCGGATCGAATAGAACTGCGAGTCGTATTGGTTG
CGGGCAACATCACACGTGCGCGGTGCTCGATGACGCTTCGCTTAAGTGCT
GGGGGATAAACAACAAAGGGATGCTCGGCTTGGGAGACACCAAAAATCGC
GGGGATGAAGACATCGAGCTAGGCGATAACCTTCCAACGGTCGACCTGGG
GACCGGTAAGGGGGTGTGTTGGTTCGAGCTCTTCGTGCATGAACATGCTC
GGCTTGGGAGACACCAAAAATCGCGGGGATGAAGACATCGAGCTAGGCGA
TAACCTTCCAACGGTCGACCTGGGGACCGGTAAGGGGGTGTGTTGGTTCG
AGCTCTTCGTGCATGAACAT
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