mRNA_H-elongata_contig72831.14962.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72831.14962.1
Unique NamemRNA_H-elongata_contig72831.14962.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A6H5JD86_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JD86_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.710e-36
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1
Query:    4 GDAKLGQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHICEKRGVYHKYYKDYTDLERHFRSDHHLCEQARILQ 225
            GD +LGQ GHPRCEFCKTR+YDA  LHDHLVKDHYSCHICEK+G+ HKYY+DYTDLERHFRS+H LCE+   LQ
Sbjct:  174 GDPQLGQTGHPRCEFCKTRFYDAAQLHDHLVKDHYSCHICEKQGILHKYYRDYTDLERHFRSEHFLCEEEECLQ 247          
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A7S0SUL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUL2_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.080e-24
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   19 GQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHICEKRGVYHKYYKDYTDLERHFRSDHHLCEQARIL 222
            G  GHP CEFCK RYYD  AL  HL KDH +CH+CE +G+ H++YKDYT+LE HFRS H LCE    L
Sbjct:  137 GSIGHPNCEFCKHRYYDREALFLHLRKDHLTCHLCESKGIQHRFYKDYTNLEAHFRSKHFLCENVNCL 204          
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A4D9DA00_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA00_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.220e-21
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 QGDAKLGQAGHPRCEFCKTR-YYDATALHDHLVKDHYSCHICEKR-GVYHKYYKDYTDLERHFRSDHHLCEQARIL 222
            QG+   G  GHP C FCK R +YD  AL++HL KDHYSC +CE+  G+ H+YY+DY DLERHFR  H LCE  R L
Sbjct:  203 QGNPARGFYGHPACNFCKKRRFYDTGALYEHLHKDHYSCDLCERHAGIQHRYYRDYPDLERHFRDTHFLCEDPRCL 278          
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: B7G8U2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8U2_PHATC)

HSP 1 Score: 94.4 bits (233), Expect = 7.910e-21
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 QGDAKL-GQAGHPRCEFCK-TRYYDATALHDHLVKDHYSCHICEKRGVYHKYYKDYTDLERHFRSDHHLCEQARILQA 228
            +GD  + G  GHP CEFC+  R+YD T LH HL KDHY CH+CEK+G++++++  Y  LERHF S H LC+  + LQA
Sbjct:  210 KGDGPMSGFEGHPACEFCRGRRFYDITELHQHLNKDHYKCHVCEKQGLHNQFFSTYQSLERHFDSQHFLCKDVQCLQA 287          
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A8K1FHA1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHA1_PYTOL)

HSP 1 Score: 94.4 bits (233), Expect = 8.000e-21
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 QGDAKLGQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHICEK-RGVYHKYYKDYTDLERHFRSDHHLCEQARIL 222
            +G+ K G  GHPRC+FC TR+Y  T L DHL K+HY C IC + +GV ++YYKDY DLE HFR++H LCE+   L
Sbjct:  861 KGNPKEGFMGHPRCDFCFTRFYSNTELFDHLHKNHYECDICVRSQGVQNRYYKDYHDLENHFRAEHFLCEEPECL 935          
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A482S3F5_9ARCH (RING-type domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3F5_9ARCH)

HSP 1 Score: 92.0 bits (227), Expect = 1.350e-20
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   19 GQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHICEKRGVYHKYYKDYTDLERHFRSDHHLCEQARILQ 225
            G  GHP CEFCKTR+YD+TAL  HL K+HY+C +CE+RG+  +Y+  Y  +E HFR  H+LCE+   L+
Sbjct:  185 GSIGHPNCEFCKTRFYDSTALFLHLTKEHYTCFLCEQRGIRFRYFHTYQHVETHFRKAHYLCEEHGCLE 253          
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A1Z5JIK2_FISSO (RING-type domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIK2_FISSO)

HSP 1 Score: 93.2 bits (230), Expect = 1.990e-20
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 QGDAKLGQAGHPRCEFCK-TRYYDATALHDHLVKDHYSCHICEKRGVYHKYYKDYTDLERHFRSDHHLCEQARILQA 228
            +GD   G  GHP CEFC+ TR+YD TALH HL  +H+ CH+CEK+G+  +Y+K+Y+ LE+HF   H LC   + L A
Sbjct:  213 RGDPAAGFHGHPLCEFCRPTRFYDITALHHHLALEHFKCHVCEKQGLSDQYFKNYSQLEKHFDRQHFLCRDVQCLMA 289          
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A024UQB2_9STRA (RING-type domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQB2_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.110e-20
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 QGDAKLGQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHIC-EKRGVYHKYYKDYTDLERHFRSDHHLCEQARILQA 228
            QG+ + G  GHP+C+FC + YY    LH+HL K HY C IC    G+ ++YYKDY D+E HFRSDH LCE+   L A
Sbjct:  173 QGNPEEGFNGHPKCDFCSSSYYGNNELHEHLRKHHYECEICLHAYGIENRYYKDYNDMENHFRSDHFLCEEPSCLAA 249          
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A485L9N1_9STRA (Aste57867_18171 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9N1_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 9.540e-20
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    4 GDAKLGQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHIC-EKRGVYHKYYKDYTDLERHFRSDHHLCEQARILQA 228
            G+   G  GHP+C+FC+ R+Y  T L+DHL K+H+ C IC    G+ ++YYKDY D+E HFRSDH LCE+ + L A
Sbjct:  174 GNPDEGFNGHPKCDFCQNRFYGNTELYDHLRKNHFECEICLHAYGIENRYYKDYNDMENHFRSDHFLCEEPQCLAA 249          
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A2D4C461_PYTIN (RING-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C461_PYTIN)

HSP 1 Score: 91.3 bits (225), Expect = 9.660e-20
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 QGDAKLGQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHICEKR-GVYHKYYKDYTDLERHFRSDHHLCEQARIL 222
            +G+ + G AGHPRC+FC +R+Y  T L DHL K+H+ C IC +  GV ++YYKDY DLE HFR++H LCE+   L
Sbjct:  869 KGNPREGFAGHPRCDFCFSRFYSNTELFDHLHKNHFECDICVRSLGVQNRYYKDYPDLENHFRAEHFLCEEPSCL 943          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JD86_9PHAE1.710e-3678.38RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S0SUL2_9STRA1.080e-2461.76Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A4D9DA00_9STRA1.220e-2157.89Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
B7G8U2_PHATC7.910e-2152.56Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A8K1FHA1_PYTOL8.000e-2156.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A482S3F5_9ARCH1.350e-2053.62RING-type domain-containing protein (Fragment) n=1... [more]
A0A1Z5JIK2_FISSO1.990e-2050.65RING-type domain-containing protein n=2 Tax=Fistul... [more]
A0A024UQB2_9STRA5.110e-2051.95RING-type domain-containing protein n=2 Tax=Aphano... [more]
A0A485L9N1_9STRA9.540e-2051.32Aste57867_18171 protein n=1 Tax=Aphanomyces stella... [more]
A0A2D4C461_PYTIN9.660e-2053.33RING-type domain-containing protein n=1 Tax=Pythiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72831contigH-elongata_contig72831:170..891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue4e-31
Seed eggNOG ortholog2880.D7FHL2
Preferred nameZNF598
KEGG koko:K22381
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006325,GO:0006412,GO:0006414,GO:0006417,GO:0006464,GO:0006513,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0030163,GO:0031323,GO:0031326,GO:0032268,GO:0032446,GO:0034248,GO:0034641,GO:0034645,GO:0036205,GO:0036211,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0051276,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:2000112,GO:2000765
EggNOG free text desc.rescue of stalled ribosome
EggNOG OGsCOG5236@1,KOG2231@2759
EC2.3.2.27
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931130.556664-CDS-H-elongata_contig72831:169..3161622931130.556664-CDS-H-elongata_contig72831:169..316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72831 170..316 +
1691679710.6415715-CDS-H-elongata_contig72831:169..3161691679710.6415715-CDS-H-elongata_contig72831:169..316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72831 170..316 +
1622931130.5706112-CDS-H-elongata_contig72831:810..8911622931130.5706112-CDS-H-elongata_contig72831:810..891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72831 811..891 +
1691679710.658414-CDS-H-elongata_contig72831:810..8911691679710.658414-CDS-H-elongata_contig72831:810..891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72831 811..891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72831.14962.1prot_H-elongata_contig72831.14962.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72831 170..891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72831.14962.1

>prot_H-elongata_contig72831.14962.1 ID=prot_H-elongata_contig72831.14962.1|Name=mRNA_H-elongata_contig72831.14962.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
QGDAKLGQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHICEKRGVYHKY
YKDYTDLERHFRSDHHLCEQARILQA
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mRNA from alignment at H-elongata_contig72831:170..891+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72831.14962.1 ID=mRNA_H-elongata_contig72831.14962.1|Name=mRNA_H-elongata_contig72831.14962.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=722bp|location=Sequence derived from alignment at H-elongata_contig72831:170..891+ (Himanthalia elongata Himel1 dioecious)
CAGGGAGACGCAAAGCTTGGGCAGGCCGGTCACCCGCGCTGCGAGTTCTG CAAGACGCGGTACTATGACGCGACGGCGCTTCACGATCACCTGGTGAAGG ACCACTACTCGTGTCACATATGCGAAAAGCGAGGGGTTTATCACAAGGTG AGGGCGGGATTATGAGAGGGGGAACCAGGGGGGGGGGCGTACTCGAGTTT CGCATTGTAGGTACAAATTGCGATGCGTGCTCCTGAGGAAGGACGGAGTG TGCTGTTCCTGGAAGGGAATTGAAAAATAGTGACCAAAAAGTAAAATAAA TCAAAGCATAGTGTTTTCTTTTTAAAAACGTAATGGATTTAAATCGGGAG CCTCGACTATTTTAGGCGGAAAAAGTAAGCACACACTTAGGGTGCCACTC GGAATATTGTCGAAGACAAGACTAGCCTGAGGAGTTCAAGCCTAAAACAA AAATTGGAGACAACATGCTTTATACTTGAAGTATATGTTTTGTGGTAAGA CCCAAGACATGTTCAATCTCCCGTTATGTTGTCTCAAGGGCCGTTGCATT CTTCCCTTATTTATCATTGCATGTTGCTTTATTTCCTTCGTTGTCATTGC CTGACATGCCACGTCCTACCTGTTGCCTCTCACGACGGCAGTACTACAAG GACTACACAGACTTAGAGAGACACTTCCGGAGCGATCACCATCTCTGCGA GCAGGCACGTATTTTACAAGCT
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Coding sequence (CDS) from alignment at H-elongata_contig72831:170..891+

>mRNA_H-elongata_contig72831.14962.1 ID=mRNA_H-elongata_contig72831.14962.1|Name=mRNA_H-elongata_contig72831.14962.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig72831:170..891+ (Himanthalia elongata Himel1 dioecious)
CAGGGAGACGCAAAGCTTGGGCAGGCCGGTCACCCGCGCTGCGAGTTCTG
CAAGACGCGGTACTATGACGCGACGGCGCTTCACGATCACCTGGTGAAGG
ACCACTACTCGTGTCACATATGCGAAAAGCGAGGGGTTTATCACAAGCAG
GGAGACGCAAAGCTTGGGCAGGCCGGTCACCCGCGCTGCGAGTTCTGCAA
GACGCGGTACTATGACGCGACGGCGCTTCACGATCACCTGGTGAAGGACC
ACTACTCGTGTCACATATGCGAAAAGCGAGGGGTTTATCACAAGTACTAC
AAGGACTACACAGACTTAGAGAGACACTTCCGGAGCGATCACCATCTCTG
CGAGCAGGCACGTATTTTACAAGCTTACTACAAGGACTACACAGACTTAG
AGAGACACTTCCGGAGCGATCACCATCTCTGCGAGCAGGCACGTATTTTA
CAAGCT
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