mRNA_H-elongata_contig72831.14962.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A6H5JD86_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JD86_9PHAE) HSP 1 Score: 139 bits (349), Expect = 1.710e-36 Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1
Query: 4 GDAKLGQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHICEKRGVYHKYYKDYTDLERHFRSDHHLCEQARILQ 225
GD +LGQ GHPRCEFCKTR+YDA LHDHLVKDHYSCHICEK+G+ HKYY+DYTDLERHFRS+H LCE+ LQ
Sbjct: 174 GDPQLGQTGHPRCEFCKTRFYDAAQLHDHLVKDHYSCHICEKQGILHKYYRDYTDLERHFRSEHFLCEEEECLQ 247
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A7S0SUL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUL2_9STRA) HSP 1 Score: 100 bits (250), Expect = 1.080e-24 Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query: 19 GQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHICEKRGVYHKYYKDYTDLERHFRSDHHLCEQARIL 222
G GHP CEFCK RYYD AL HL KDH +CH+CE +G+ H++YKDYT+LE HFRS H LCE L
Sbjct: 137 GSIGHPNCEFCKHRYYDREALFLHLRKDHLTCHLCESKGIQHRFYKDYTNLEAHFRSKHFLCENVNCL 204
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A4D9DA00_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA00_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.220e-21 Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 1 QGDAKLGQAGHPRCEFCKTR-YYDATALHDHLVKDHYSCHICEKR-GVYHKYYKDYTDLERHFRSDHHLCEQARIL 222
QG+ G GHP C FCK R +YD AL++HL KDHYSC +CE+ G+ H+YY+DY DLERHFR H LCE R L
Sbjct: 203 QGNPARGFYGHPACNFCKKRRFYDTGALYEHLHKDHYSCDLCERHAGIQHRYYRDYPDLERHFRDTHFLCEDPRCL 278
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: B7G8U2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8U2_PHATC) HSP 1 Score: 94.4 bits (233), Expect = 7.910e-21 Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 QGDAKL-GQAGHPRCEFCK-TRYYDATALHDHLVKDHYSCHICEKRGVYHKYYKDYTDLERHFRSDHHLCEQARILQA 228
+GD + G GHP CEFC+ R+YD T LH HL KDHY CH+CEK+G++++++ Y LERHF S H LC+ + LQA
Sbjct: 210 KGDGPMSGFEGHPACEFCRGRRFYDITELHQHLNKDHYKCHVCEKQGLHNQFFSTYQSLERHFDSQHFLCKDVQCLQA 287
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A8K1FHA1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHA1_PYTOL) HSP 1 Score: 94.4 bits (233), Expect = 8.000e-21 Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query: 1 QGDAKLGQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHICEK-RGVYHKYYKDYTDLERHFRSDHHLCEQARIL 222
+G+ K G GHPRC+FC TR+Y T L DHL K+HY C IC + +GV ++YYKDY DLE HFR++H LCE+ L
Sbjct: 861 KGNPKEGFMGHPRCDFCFTRFYSNTELFDHLHKNHYECDICVRSQGVQNRYYKDYHDLENHFRAEHFLCEEPECL 935
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A482S3F5_9ARCH (RING-type domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3F5_9ARCH) HSP 1 Score: 92.0 bits (227), Expect = 1.350e-20 Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 19 GQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHICEKRGVYHKYYKDYTDLERHFRSDHHLCEQARILQ 225
G GHP CEFCKTR+YD+TAL HL K+HY+C +CE+RG+ +Y+ Y +E HFR H+LCE+ L+
Sbjct: 185 GSIGHPNCEFCKTRFYDSTALFLHLTKEHYTCFLCEQRGIRFRYFHTYQHVETHFRKAHYLCEEHGCLE 253
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A1Z5JIK2_FISSO (RING-type domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIK2_FISSO) HSP 1 Score: 93.2 bits (230), Expect = 1.990e-20 Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 1 QGDAKLGQAGHPRCEFCK-TRYYDATALHDHLVKDHYSCHICEKRGVYHKYYKDYTDLERHFRSDHHLCEQARILQA 228
+GD G GHP CEFC+ TR+YD TALH HL +H+ CH+CEK+G+ +Y+K+Y+ LE+HF H LC + L A
Sbjct: 213 RGDPAAGFHGHPLCEFCRPTRFYDITALHHHLALEHFKCHVCEKQGLSDQYFKNYSQLEKHFDRQHFLCRDVQCLMA 289
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A024UQB2_9STRA (RING-type domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQB2_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 5.110e-20 Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 1 QGDAKLGQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHIC-EKRGVYHKYYKDYTDLERHFRSDHHLCEQARILQA 228
QG+ + G GHP+C+FC + YY LH+HL K HY C IC G+ ++YYKDY D+E HFRSDH LCE+ L A
Sbjct: 173 QGNPEEGFNGHPKCDFCSSSYYGNNELHEHLRKHHYECEICLHAYGIENRYYKDYNDMENHFRSDHFLCEEPSCLAA 249
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A485L9N1_9STRA (Aste57867_18171 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9N1_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 9.540e-20 Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 4 GDAKLGQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHIC-EKRGVYHKYYKDYTDLERHFRSDHHLCEQARILQA 228
G+ G GHP+C+FC+ R+Y T L+DHL K+H+ C IC G+ ++YYKDY D+E HFRSDH LCE+ + L A
Sbjct: 174 GNPDEGFNGHPKCDFCQNRFYGNTELYDHLRKNHFECEICLHAYGIENRYYKDYNDMENHFRSDHFLCEEPQCLAA 249
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Match: A0A2D4C461_PYTIN (RING-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C461_PYTIN) HSP 1 Score: 91.3 bits (225), Expect = 9.660e-20 Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query: 1 QGDAKLGQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHICEKR-GVYHKYYKDYTDLERHFRSDHHLCEQARIL 222
+G+ + G AGHPRC+FC +R+Y T L DHL K+H+ C IC + GV ++YYKDY DLE HFR++H LCE+ L
Sbjct: 869 KGNPREGFAGHPRCDFCFSRFYSNTELFDHLHKNHFECDICVRSLGVQNRYYKDYPDLENHFRAEHFLCEEPSCL 943 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72831.14962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig72831.14962.1 >prot_H-elongata_contig72831.14962.1 ID=prot_H-elongata_contig72831.14962.1|Name=mRNA_H-elongata_contig72831.14962.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp QGDAKLGQAGHPRCEFCKTRYYDATALHDHLVKDHYSCHICEKRGVYHKYback to top mRNA from alignment at H-elongata_contig72831:170..891+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig72831.14962.1 ID=mRNA_H-elongata_contig72831.14962.1|Name=mRNA_H-elongata_contig72831.14962.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=722bp|location=Sequence derived from alignment at H-elongata_contig72831:170..891+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig72831:170..891+ >mRNA_H-elongata_contig72831.14962.1 ID=mRNA_H-elongata_contig72831.14962.1|Name=mRNA_H-elongata_contig72831.14962.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig72831:170..891+ (Himanthalia elongata Himel1 dioecious)back to top |