mRNA_H-elongata_contig72782.14954.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE) HSP 1 Score: 189 bits (481), Expect = 1.610e-54 Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 1
Query: 1 GKFLEGSSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 285
GKFLEGS+TIT+GFTHAIS+GNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct: 470 GKFLEGSTTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 564
BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.000e-47 Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = 1
Query: 10 LEGSSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 285
L GS IT GF HAISTGNWV+KRFK+DRQGVTQVLSRLS+IS LGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct: 445 LAGSMNITQGFIHAISTGNWVVKRFKMDRQGVTQVLSRLSYISCLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 536
BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A7S3DSN5_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DSN5_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.640e-46 Identity = 72/87 (82.76%), Postives = 83/87 (95.40%), Query Frame = 1
Query: 25 TITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 285
TITNG +AI+TGNWVLKRFK+DR GVTQVLSRLS++S+LGMMTR++SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct: 51 TITNGMINAIATGNWVLKRFKMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 137
BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A822DRV6_9NEOB (DNA-directed RNA polymerase n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822DRV6_9NEOB) HSP 1 Score: 155 bits (393), Expect = 4.850e-46 Identity = 73/86 (84.88%), Postives = 81/86 (94.19%), Query Frame = 1
Query: 28 ITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 285
ITNG +AISTGNW LKRFK+DRQGVTQVLSRLSFIS+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct: 74 ITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 159
BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A7S1V6C3_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6C3_9STRA) HSP 1 Score: 152 bits (385), Expect = 4.810e-45 Identity = 72/87 (82.76%), Postives = 81/87 (93.10%), Query Frame = 1
Query: 25 TITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 285
TIT G AISTGNWVLKRF++DR GVTQVLSRLS++S+LGMMTRV+SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct: 19 TITYGMVTAISTGNWVLKRFRMDRAGVTQVLSRLSYVSALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 105
BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A059LAC5_9CHLO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LAC5_9CHLO) HSP 1 Score: 151 bits (381), Expect = 6.040e-45 Identity = 70/89 (78.65%), Postives = 82/89 (92.13%), Query Frame = 1
Query: 19 SSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 285
S T+T G HA+S+GNW ++RF+++R+GVTQVLSRLSFIS+LGMMTRV SQF+K RKVSGPRALQPSQWGM+CPADTPEGESCGLVKNL
Sbjct: 67 SDTLTYGLEHALSSGNWNIRRFRMERRGVTQVLSRLSFISALGMMTRVTSQFEKTRKVSGPRALQPSQWGMVCPADTPEGESCGLVKNL 155
BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A7S0U407_HEMAN (DNA-directed RNA polymerase (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U407_HEMAN) HSP 1 Score: 150 bits (378), Expect = 8.260e-45 Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 1
Query: 4 KFLEGSSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 285
K+L +S IT+G +AISTGNW L+RF ++RQGVTQVLSRLSFI++LGM+TRV SQF+K RKVSGPR+LQPSQWGMLCPADTPEGESCGLVKNL
Sbjct: 21 KYLP-ASKITSGLVNAISTGNWNLRRFGMERQGVTQVLSRLSFIAALGMITRVQSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGESCGLVKNL 113
BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A7S2WKY6_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WKY6_9STRA) HSP 1 Score: 154 bits (389), Expect = 1.210e-44 Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = 1
Query: 19 SSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 285
S TIT G AISTGNWVLKRF++DR GVTQVLSRLS++S+LGMMTRV+SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct: 145 SDTITMGMVMAISTGNWVLKRFRMDRAGVTQVLSRLSYVSALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 233
BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A7S3PBU7_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBU7_9STRA) HSP 1 Score: 154 bits (389), Expect = 3.370e-44 Identity = 71/87 (81.61%), Postives = 83/87 (95.40%), Query Frame = 1
Query: 25 TITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 285
TITNG +AI+TGNWVLKRF++DR GVTQVLSRLS++S+LGMMTR++SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct: 165 TITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 251
BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A482SPL4_9ARCH (DNA-directed RNA polymerase subunit beta n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPL4_9ARCH) HSP 1 Score: 160 bits (404), Expect = 1.330e-43 Identity = 76/94 (80.85%), Postives = 86/94 (91.49%), Query Frame = 1
Query: 4 KFLEGSSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 285
KF+ G TIT GF HAISTG+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct: 193 KFIRGD-TITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 285 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig72782.14954.1 >prot_H-elongata_contig72782.14954.1 ID=prot_H-elongata_contig72782.14954.1|Name=mRNA_H-elongata_contig72782.14954.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp GKFLEGSSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMback to top mRNA from alignment at H-elongata_contig72782:1262..3108+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig72782.14954.1 ID=mRNA_H-elongata_contig72782.14954.1|Name=mRNA_H-elongata_contig72782.14954.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1847bp|location=Sequence derived from alignment at H-elongata_contig72782:1262..3108+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig72782:1262..3108+ >mRNA_H-elongata_contig72782.14954.1 ID=mRNA_H-elongata_contig72782.14954.1|Name=mRNA_H-elongata_contig72782.14954.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig72782:1262..3108+ (Himanthalia elongata Himel1 dioecious)back to top |