mRNA_H-elongata_contig72733.14946.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72733.14946.1
Unique NamemRNA_H-elongata_contig72733.14946.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: D7FSB2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSB2_ECTSI)

HSP 1 Score: 471 bits (1213), Expect = 7.960e-163
Identity = 215/300 (71.67%), Postives = 251/300 (83.67%), Query Frame = 1
Query:    1 KTRHCWDARSTPVKARHAFNMSNPSPLNNTSYTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEV 900
            K R  WD  +   +   + +++  S +   SY T VPRVTGI ++S  +T++CM+ NC++EV++CAKD  CRACISCL +CPPNDQVCAYRCITSYET++ME FSLCVLQKNNCMC SAEIP LPDP     FRG  +TH+ A+D+F+GWLG+E +SWKVVCGQNPAYDFFPSQHQIFYRG+G+G MWYDPVFKVVTIKGEEVWRRRHYRVK A TPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYY+GAA  AGQSYTG+LLV+RDG WP   E++RV+KAFD+CGIKLWELF V
Sbjct:  176 KDRVLWDTLNNFYERNSSEDLTFLSLVLVDSYVTTVPRVTGIGKDSNPDTVDCMMENCKQEVIDCAKDADCRACISCLTACPPNDQVCAYRCITSYETKTMEMFSLCVLQKNNCMCNSAEIPTLPDPPAQATFRGKPLTHETAQDLFMGWLGKEAYSWKVVCGQNPAYDFFPSQHQIFYRGRGEGQMWYDPVFKVVTIKGEEVWRRRHYRVKPAVTPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYAGAATAAGQSYTGSLLVSRDGDWPEQKEMERVEKAFDSCGIKLWELFPV 475          
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A835Z990_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z990_9STRA)

HSP 1 Score: 370 bits (951), Expect = 1.020e-123
Identity = 161/272 (59.19%), Postives = 204/272 (75.00%), Query Frame = 1
Query:   94 YTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQER-----FSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELF 894
            Y T VP   G+ ++SG   + C+L+ CR +++ C ++P C+ACI+CL  CPPNDQVC+YRCITSYET + E+FSLC++ K+NCM   AE+PA PDPAP+T +RG  + H+   DI +GWLG E      +SWKV CGQNPAYD+FP+QHQIFYRGK +G MWYDPVF+V T+ GE+VWRRRHYRV+    PGTF FSVLDNGV S EYWRI+  ++DLSW   YYSGAAA AGQ+Y GALL+T DG WP    ++ V  AF TCGI++WEL+
Sbjct:  145 YVTEVPAAQGLGKKSGVGMVACILTKCRAQLLACVREPTCKACITCLNKCPPNDQVCSYRCITSYETATFEQFSLCLMTKHNCMGNHAEMPASPDPAPMTHYRGRPLDHETGEDILIGWLGGEDQGLRPWSWKVACGQNPAYDYFPNQHQIFYRGKREGTMWYDPVFQVNTLAGEKVWRRRHYRVRRGTAPGTFFFSVLDNGVTSKEYWRIVAAAEDLSWACVYYSGAAAAAGQAYAGALLITPDGEWPAPAAMEEVTAAFATCGIEMWELY 416          
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A5B8MGQ5_9CHLO (VDE domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MGQ5_9CHLO)

HSP 1 Score: 352 bits (904), Expect = 1.100e-117
Identity = 163/271 (60.15%), Postives = 202/271 (74.54%), Query Frame = 1
Query:  106 VPRVTGISQESGSETLN---CMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGD-GEIDRVQKAFDTCGIKLWELFEVRH 906
            VPRV+     SG  +L    CML+NC  EV +C  D  CRA + CL  C  NDQVC+Y+CI SYE+E  EKFS CVLQK+NCM KSA++P LP+  P+  FRG  +TH+VA +I +GWLG+ER SWKVV GQN AYD FP+QHQIFYRGK +   WYDPVF+  T  G+ VWRRRHYRV+   +PGTF FSVLDNGV+S+EYWRI D +DDLSW V YYSGAA+ AGQ+YTGA+ V+R G WP D  +++R+++A D CGIK+WELFEV +
Sbjct:  100 VPRVS--MDASGGSSLPLVWCMLTNCGREVWDCVSDETCRAALDCLAGCGLNDQVCSYQCIVSYESELFEKFSKCVLQKHNCMRKSAKVPRLPEVEPMHEFRGSALTHEVAEEILIGWLGEERHSWKVVTGQNAAYDVFPNQHQIFYRGKRKRSFWYDPVFQARTFDGDLVWRRRHYRVRRGRSPGTFHFSVLDNGVISDEYWRIADAADDLSWAVLYYSGAASAAGQAYTGAVFVSRTGRWPDDRSQLERIERAHDKCGIKMWELFEVEN 368          
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A2K1K5M2_PHYPA (VDE domain-containing protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K5M2_PHYPA)

HSP 1 Score: 358 bits (918), Expect = 1.770e-117
Identity = 162/282 (57.45%), Postives = 209/282 (74.11%), Query Frame = 1
Query:   91 SYTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQE---------RFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEVRHA 909
            SY T V  +  + + +   ++ CM+ NCR ++++C  DP CR  ++CL+SC P DQVC+YRCI SYE+E +E F+LCVLQK+NC+  SA+I   PD  P+  FRG+ VTH++A D+F+GWLG+          ++SW+VV GQN AYD FP Q QIFYRGK +G MWYDPVF+V T+ G+ VWRRRHYRVK    PGTF F+VLDNGV+S E+WRI+DV DDLSWG+FYYSGAAA AGQSYTGA+LVT+DGSWP + E  R+  A D CGIK+WEL+ V +A
Sbjct:  253 SYVTPVTLLKNL-RATSLASVQCMVKNCRSQILSCILDPNCRQALNCLQSCAPTDQVCSYRCIVSYESEKLEAFTLCVLQKHNCLGLSADILMQPDVQPMKLFRGNPVTHEIAEDLFIGWLGRPNPDSLATPLKYSWRVVAGQNAAYDQFPCQFQIFYRGKAKGSMWYDPVFQVQTLDGKLVWRRRHYRVKRDVVPGTFYFTVLDNGVISKEFWRIVDVKDDLSWGLFYYSGAAAAAGQSYTGAILVTQDGSWPPESEAIRLNSALDKCGIKVWELYRVNNA 533          
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A0K9NGW4_ZOSMR (Violaxanthin de-epoxidase, chloroplastic n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NGW4_ZOSMR)

HSP 1 Score: 346 bits (888), Expect = 4.480e-115
Identity = 159/273 (58.24%), Postives = 197/273 (72.16%), Query Frame = 1
Query:   94 YTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEVRHAA 912
            Y   VP +  + +  G  TL+CM++NC  EV+NC  D  CR  + CL +C P DQVC+YRCI SYE+  +E FSLCVLQKNNC+   AEIP  P   P T FR + +THD+A D+FVGWLG  ++SW+VV GQNPAYD FP Q+Q+FYRGK +   WY+PVFKV T  GEEVWRRR Y V+    PG F FSVLDNGVVS E W I+DV DDLSWG+F+YSGAAA AGQSYTGA+LV+ DG +P D E +R+  A D CGIK+WEL+ V +++
Sbjct:  100 YIKPVPSLKNL-RAKGFSTLSCMVNNCGREVINCLLDKNCRKALQCLNACSPTDQVCSYRCIASYESPRLEAFSLCVLQKNNCLELDAEIPRKPVVQPQTTFRSEPLTHDIAEDLFVGWLGNLKWSWRVVAGQNPAYDQFPCQYQLFYRGKSKRSFWYEPVFKVTTFDGEEVWRRRKYSVRRGDVPGKFYFSVLDNGVVSKEAWTIVDVCDDLSWGLFHYSGAAAAAGQSYTGAVLVSPDGMYPPDMEGERLDSALDKCGIKIWELYNVNNSS 371          
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A7S2Z7P6_9CHLO (Hypothetical protein n=2 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z7P6_9CHLO)

HSP 1 Score: 347 bits (890), Expect = 1.360e-113
Identity = 158/269 (58.74%), Postives = 195/269 (72.49%), Query Frame = 1
Query:  106 VPRVTGISQESGSET--LNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEVRH 906
            VPRV+  +   G     + CML+NCREEVV C  DP+C+A + CL  C  NDQVC+Y+CI S+E+   E+FS CVLQ++NCM  +AE+PA P   P+  FRG  +TH+ A +I +GWLG+ER SWKVV GQN AYD FP+QHQIFYRGK +   WYDPVF+     GE VWRRRHYRV+    PGTF FSVLDNGV+SNE+WRI D +DDL+W V YY+GAA+ AGQ+YTGA+  TRDG WP + E  RV+ A   CGIKLWELFEV +
Sbjct:  246 VPRVSMTAGGGGGSLGLIWCMLTNCREEVVACVTDPECKAALDCLTGCGLNDQVCSYQCIVSHESPLFERFSQCVLQRHNCMKNAAEVPAEPVVEPMAEFRGQPLTHEAAEEILIGWLGKERHSWKVVTGQNAAYDIFPNQHQIFYRGKRKRSFWYDPVFQARKFDGELVWRRRHYRVRRGKVPGTFYFSVLDNGVISNEFWRIADAADDLTWTVLYYAGAASAAGQAYTGAVFATRDGQWPAESEFARVEAAHAKCGIKLWELFEVEN 514          
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A2C9UWK7_MANES (VDE domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9UWK7_MANES)

HSP 1 Score: 347 bits (890), Expect = 2.120e-113
Identity = 158/273 (57.88%), Postives = 198/273 (72.53%), Query Frame = 1
Query:   94 YTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEVRHAA 912
            Y   VP +  + +  G  TLNCM+ NC  ++VNC  DP CR  + CL +C P DQVC YRCI SYE+ ++E FSLCVLQKNNC+   A IP  P   P+ +FRG+E+ H+ A D+FVGWLG   +SW+VV GQNPAYD FP Q+Q+FYRGK +G  WY+PVF+V T++G  VWRRR YRVK    PGTF FSVLDNGVVSNE+W  +DVSDD SWG+F+YSGAA  AGQSYTGA+LV+ DG++P + E +R+  A D CGIK WELF V + +
Sbjct:  241 YIRPVPILKNL-RSKGFSTLNCMVKNCGPQIVNCLLDPNCRKALQCLNNCSPVDQVCNYRCIASYESPNLEAFSLCVLQKNNCLELDARIPERPYVPPMVKFRGEELCHETAEDLFVGWLGTLDWSWRVVAGQNPAYDQFPCQYQLFYRGKAKGSFWYEPVFQVQTLEGRMVWRRRKYRVKRGKVPGTFHFSVLDNGVVSNEFWTTVDVSDDFSWGLFHYSGAARAAGQSYTGAVLVSPDGAYPNEKERERMVSALDKCGIKEWELFTVDNCS 512          
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A8J9SBB6_9CHLO (Probable violaxanthin de-epoxidase, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SBB6_9CHLO)

HSP 1 Score: 346 bits (887), Expect = 2.250e-113
Identity = 154/272 (56.62%), Postives = 202/272 (74.26%), Query Frame = 1
Query:   94 YTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEVRHA 909
            +  +VPR+  + + SG   L  M+ NC  ++  C  DP C+A + CL+SC P DQVC+YRCI S+E++ +E FSLC+LQK+NC+ KSA+IPALPDP P+  FRG  ++HD+A  +F+GWLG+E +SW+VV GQN AYD FP Q+QIFYRGK +  +WYDPVF+V T+ G  VWRRRHYRV+ A  PGTF FSVLDNGV+S E+WRI+DV DDLSW +F YSGAA+ AGQ YTGA+L T DG WP D + +R+ +A    GI+ WELF V ++
Sbjct:  209 FIVKVPRLDSL-RASGPLALARMIKNCGPQIFACVNDPDCKAALDCLQSCSPTDQVCSYRCIVSHESQLLEDFSLCILQKHNCLGKSADIPALPDPPPMGSFRGRALSHDLAEALFIGWLGREEWSWRVVAGQNAAYDQFPCQYQIFYRGKAKRSLWYDPVFQVRTLDGRTVWRRRHYRVRRAEIPGTFHFSVLDNGVISKEFWRIVDVPDDLSWALFAYSGAASAAGQVYTGAVLCTPDGIWPADSQEERINRALRLSGIEPWELFRVDNS 479          
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: R0FWC2_9BRAS (VDE domain-containing protein n=4 Tax=Camelineae TaxID=980083 RepID=R0FWC2_9BRAS)

HSP 1 Score: 346 bits (888), Expect = 2.490e-113
Identity = 159/273 (58.24%), Postives = 200/273 (73.26%), Query Frame = 1
Query:   94 YTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEVRHAA 912
            Y   VP +  + +  G  TL+CM+ NC  +++NC  DP CR  + CL  C P DQVC+YRCI SYE+   E FSLCVLQK+NC+   A+IP  P   P+T FRG E+ HD A D+FVGWLG+  +SW+VV GQNPAYD FP Q+Q+FYRGKG+   WY+PVF+V T++ + VWRRR Y VK    P TFRFSVLDNGVVSNE+W I+DVSDDLSWG+F+Y+GAA VAGQSYTGA+LVT DGS+P + E +R+Q A + CGIK WELF V + +
Sbjct:  222 YIRPVPVLQNL-RSKGFSTLSCMVKNCGPQILNCLLDPNCRKALQCLNQCSPVDQVCSYRCIASYESPYFEAFSLCVLQKHNCLELDAKIPEKPYVPPMTTFRGKELCHDTAEDLFVGWLGELDWSWRVVAGQNPAYDQFPCQYQLFYRGKGKSAFWYEPVFQVRTLEEKLVWRRRRYSVKQGKIPATFRFSVLDNGVVSNEFWTIVDVSDDLSWGLFHYNGAARVAGQSYTGAVLVTPDGSYPAEKEKERLQSALEKCGIKEWELFAVDNCS 493          
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A7J7C166_TRIWF (Violaxanthin de-epoxidase-related n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7C166_TRIWF)

HSP 1 Score: 346 bits (888), Expect = 3.880e-113
Identity = 158/269 (58.74%), Postives = 196/269 (72.86%), Query Frame = 1
Query:   94 YTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEV 900
            Y   VP +  + +  G  TLNCM+ NC  E++NC  DP CR  + CL  C P DQVC YRCI SYE++++E FSLCVLQK+NC+   A+IP  P   P+ +FRG E+ H+ A D+FVGWLG   +SW+VV GQNPAYD FP Q+Q+FYRGK +G  WY+PVF+V T+ G  VWRRR YRVK    PGTF FSVLDNGVVSNE+W I+DVSDD SWG+F+YSGAA VAGQSYTGA+LV+ DG++P + E  R+  A + CGIK WELF V
Sbjct:  240 YIRPVPILKNL-RAKGFSTLNCMVRNCGTEILNCLLDPNCRKALECLNKCSPVDQVCNYRCIASYESQNLEAFSLCVLQKHNCLQLDAKIPEKPYVPPMVKFRGKELCHETAEDLFVGWLGSLNWSWRVVAGQNPAYDQFPCQYQLFYRGKARGTFWYEPVFRVKTLDGRLVWRRRKYRVKRGKVPGTFNFSVLDNGVVSNEFWTIVDVSDDFSWGLFHYSGAARVAGQSYTGAVLVSPDGAYPNEVESRRLVSALEKCGIKEWELFNV 507          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSB2_ECTSI7.960e-16371.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z990_9STRA1.020e-12359.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5B8MGQ5_9CHLO1.100e-11760.15VDE domain-containing protein n=1 Tax=Chloropicon ... [more]
A0A2K1K5M2_PHYPA1.770e-11757.45VDE domain-containing protein n=4 Tax=Physcomitriu... [more]
A0A0K9NGW4_ZOSMR4.480e-11558.24Violaxanthin de-epoxidase, chloroplastic n=1 Tax=Z... [more]
A0A7S2Z7P6_9CHLO1.360e-11358.74Hypothetical protein n=2 Tax=Chloropicon laureae T... [more]
A0A2C9UWK7_MANES2.120e-11357.88VDE domain-containing protein n=1 Tax=Manihot escu... [more]
A0A8J9SBB6_9CHLO2.250e-11356.62Probable violaxanthin de-epoxidase, chloroplastic ... [more]
R0FWC2_9BRAS2.490e-11358.24VDE domain-containing protein n=4 Tax=Camelineae T... [more]
A0A7J7C166_TRIWF3.880e-11358.74Violaxanthin de-epoxidase-related n=1 Tax=Triptery... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72733contigH-elongata_contig72733:171..2709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score471.5
Seed ortholog evalue3e-130
Seed eggNOG ortholog2880.D7FSB2
Preferred nameVDR
EggNOG free text desc.violaxanthin
EggNOG OGs2CNB1@1,2QUXT@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size918
Cds size918
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72733.14946.1prot_H-elongata_contig72733.14946.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72733 171..2709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931129.331762-CDS-H-elongata_contig72733:170..3491622931129.331762-CDS-H-elongata_contig72733:170..349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72733 171..349 -
1691679710.1040268-CDS-H-elongata_contig72733:170..3491691679710.1040268-CDS-H-elongata_contig72733:170..349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72733 171..349 -
1622931129.3528423-CDS-H-elongata_contig72733:794..9271622931129.3528423-CDS-H-elongata_contig72733:794..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72733 795..927 -
1691679710.116504-CDS-H-elongata_contig72733:794..9271691679710.116504-CDS-H-elongata_contig72733:794..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72733 795..927 -
1622931129.3662655-CDS-H-elongata_contig72733:1355..14811622931129.3662655-CDS-H-elongata_contig72733:1355..1481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72733 1356..1481 -
1691679710.1278436-CDS-H-elongata_contig72733:1355..14811691679710.1278436-CDS-H-elongata_contig72733:1355..1481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72733 1356..1481 -
1622931129.3807523-CDS-H-elongata_contig72733:1901..21231622931129.3807523-CDS-H-elongata_contig72733:1901..2123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72733 1902..2123 -
1691679710.1454446-CDS-H-elongata_contig72733:1901..21231691679710.1454446-CDS-H-elongata_contig72733:1901..2123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72733 1902..2123 -
1622931129.3967924-CDS-H-elongata_contig72733:2451..27091622931129.3967924-CDS-H-elongata_contig72733:2451..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72733 2452..2709 -
1691679710.1642792-CDS-H-elongata_contig72733:2451..27091691679710.1642792-CDS-H-elongata_contig72733:2451..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72733 2452..2709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72733.14946.1

>prot_H-elongata_contig72733.14946.1 ID=prot_H-elongata_contig72733.14946.1|Name=mRNA_H-elongata_contig72733.14946.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=306bp
KTRHCWDARSTPVKARHAFNMSNPSPLNNTSYTTRVPRVTGISQESGSET
LNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETES
MEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGW
LGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKG
EEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFY
YSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEV
RHAAL*
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mRNA from alignment at H-elongata_contig72733:171..2709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72733.14946.1 ID=mRNA_H-elongata_contig72733.14946.1|Name=mRNA_H-elongata_contig72733.14946.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2539bp|location=Sequence derived from alignment at H-elongata_contig72733:171..2709- (Himanthalia elongata Himel1 dioecious)
AAAACCCGGCACTGTTGGGATGCGCGGTCTACACCCGTTAAAGCACGACA TGCGTTTAATATGAGTAACCCCTCCCCCTTGAACAACACCAGCTACACGA CACGGGTGCCACGAGTGACGGGGATCTCGCAGGAATCCGGATCGGAAACG CTGAACTGCATGTTGTCCAACTGCAGAGAAGAAGTCGTGAACTGCGCCAA GGATCCGCAGTGTCGGGCGTGCATTTCGTGTCTGGAGAGCTGCCCACCCA ACGACCAGGTCTGATGAAAGCGTGGCCCGCTTGCGGAAGAGTTAAAATAT GCTTCTATCGGTTGTAAAAAATCGACAGTGCCATTCAGCAGGAAAAGGGT CGCCGTTTTCCGTCGGACTCGCGCTGCATGGCCTGGCGCCTAGACGTCGT CGATATATCTGGGCTGACCAGTGCGGTGAAATATTTAAAACTCGTGAATG ACGCCGCTCGGCGCCTCCAGGGCGGAAACCGATCAAGTATTACCTCTGCT GCGTTGAGGTGGAAGACTTTTTTTCCAGACTTCGATGCCTGCCGCGCGCT CTCGTGGATCACTGACTGCGCCCATCGCCCCGGCAGGTTTGCGCCTACCG TTGCATAACCTCCTACGAAACCGAGTCGATGGAGAAGTTCTCTCTGTGCG TGCTGCAGAAGAACAACTGCATGTGCAAGTCGGCCGAAATACCCGCCCTC CCCGACCCGGCACCCCTGACCCGCTTCCGAGGGGACGAGGTTACGCATGA CGTTGCTCGAGACATTTTTGTGGGCTGGTTAGGCCAGGAGCGTTTCTCGT GGAAAGTGGTGGGTGGTAATGGCGAGGCGTAAAATAACTTACCATGTGGA AAGCTAGAAGTCGAACACGAAAATATGCTATTTTATCACGAAAAGCTCTC AAAAGATCTCCAAGAGGATCATTCGGTGCTGTAAGGGCAGCTTTTTGGAT GACCCGTGAAATTTCGCCCTTCAGCCAAGCGATTACGTCGTTAAAATGCG ACTCTTTAGCTGCTGATGGCTCGACGTAGCCGATGATTCATTTCGCCGTG TTGAGTCCGTGGATCGTGTGTCCCTTCACGTCAAGGTTTCCTTGAAACTG TTAGTGTATTCGTGGCCTACCAGCCAGGGGGATTATATGCAACCTGTAGG TATTAACTATTAACAAGGATCACGCTGTTTTCCTCCATTCGGTTCCCCCA TTCGGTTTTCGCACGCTACGCCTCCCAGGTTTGTGGGCAGAATCCCGCGT ACGACTTTTTTCCATCCCAGCACCAAATATTTTATCGCGGAAAGGGACAG GGGGTGATGTGGTACGACCCCGTGTTCAAAGTTGTCACCATAAAGGGCGA GGAGGTGGGTCGGTACAAAGGTTTCCAATGTATCGAGGCGTGTAGACAAA GGCACCCGAGTCGTCCCTACTTCCCGTGCGCACTGAAAAATGAAAATCCC AGAATGTCGACGGGTCAAGCCACAGGCTGTGTCTTCTATCTATCAAGAGT ACGCCGCAGGTAGGGAGGTAGGGTCAATAACCGCAGGTAGGGTCAATGAC CGTTTCAAACAAAACACATTCCCCCCCCGAGCGTGCTCTCTGTTGCGCCC TTAAAACTAAATATATAGATCGAGCAGCGGGGGCAGCAGCGCCATGGACA CCTCACCTCCGATCGTTTTTTCGTCGTGCGCGCCATGCCTGTCCTAAAAG CACTTTTATTTTTTTCCCGCGCTGGCATCGGCATGTGCTTCGGAACACCG ACGACCCTTGGACGGCGATCGTGCTCCGTCAGGTGTGGAGACGACGCCAC TACCGAGTGAAGTCGGCCGCAACGCCTGGAACGTTTCGTTTCTCCGTCCT GGACAACGGGGTCGTGTCCAACGAGTACTGGCGAATTATCGATGTTTCCG ACGACCTGTCGTGGGGTGAGTCATGGAGAGCCTCGTGCTGTAGCTGCTTG TACTGAAGGCAGCGACACGGTGTGGGTTGTTGTTGTTGTTGCTGTTGCTG TCGTTGTTTCTCACATACAGCGTATTGGTTGTCAACCCCCCTCCCCCTCC CCTACTCTACTCTACTCTACTCTACTCTACTCTACTCTACTCTACTCTAC TCTACACGGTGGCCAATCCCGCTCGTGGTATGTTTAAAAGTCTGTGGTGG CTCATGGCACTCGAAATGAAAATCCCCCCGCGCTAACTGTTGCGTGTCGG CGTAGGTTATGGGAACATCAGCATGATCACATATATATATATATCTCTCT CTATATATATCGTTGAAAGGGTGTGAGACACCCCGACTTGAAGCATACGG AAGTATTCCCCTTGATTCAGTTGGACAAGCCTGCTGCGCATACGAACTCT ATCCTCCAAGGTGTCTTTTACTACTCCGGTGCGGCGGCGGTGGCTGGGCA ATCGTACACGGGAGCACTGCTGGTAACGCGCGACGGCAGCTGGCCTGGCG ACGGGGAGATCGATCGCGTCCAAAAGGCGTTTGACACGTGCGGGATCAAG TTGTGGGAGCTTTTCGAGGTACGACACGCAGCACTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig72733:171..2709-

>mRNA_H-elongata_contig72733.14946.1 ID=mRNA_H-elongata_contig72733.14946.1|Name=mRNA_H-elongata_contig72733.14946.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1836bp|location=Sequence derived from alignment at H-elongata_contig72733:171..2709- (Himanthalia elongata Himel1 dioecious)
AAAACCCGGCACTGTTGGGATGCGCGGTCTACACCCGTTAAAGCACGACA
TGCGTTTAATATGAGTAACCCCTCCCCCTTGAACAACACCAGCTACACGA
CACGGGTGCCACGAGTGACGGGGATCTCGCAGGAATCCGGATCGGAAACG
CTGAACTGCATGTTGTCCAACTGCAGAGAAGAAGTCGTGAACTGCGCCAA
GGATCCGCAGTGTCGGGCGTGCATTTCGTGTCTGGAGAGCTGCCCACCCA
ACGACCAGAAAACCCGGCACTGTTGGGATGCGCGGTCTACACCCGTTAAA
GCACGACATGCGTTTAATATGAGTAACCCCTCCCCCTTGAACAACACCAG
CTACACGACACGGGTGCCACGAGTGACGGGGATCTCGCAGGAATCCGGAT
CGGAAACGCTGAACTGCATGTTGTCCAACTGCAGAGAAGAAGTCGTGAAC
TGCGCCAAGGATCCGCAGTGTCGGGCGTGCATTTCGTGTCTGGAGAGCTG
CCCACCCAACGACCAGGTTTGCGCCTACCGTTGCATAACCTCCTACGAAA
CCGAGTCGATGGAGAAGTTCTCTCTGTGCGTGCTGCAGAAGAACAACTGC
ATGTGCAAGTCGGCCGAAATACCCGCCCTCCCCGACCCGGCACCCCTGAC
CCGCTTCCGAGGGGACGAGGTTACGCATGACGTTGCTCGAGACATTTTTG
TGGGCTGGTTAGGCCAGGAGCGTTTCTCGTGGAAAGTGGTTTGCGCCTAC
CGTTGCATAACCTCCTACGAAACCGAGTCGATGGAGAAGTTCTCTCTGTG
CGTGCTGCAGAAGAACAACTGCATGTGCAAGTCGGCCGAAATACCCGCCC
TCCCCGACCCGGCACCCCTGACCCGCTTCCGAGGGGACGAGGTTACGCAT
GACGTTGCTCGAGACATTTTTGTGGGCTGGTTAGGCCAGGAGCGTTTCTC
GTGGAAAGTGGTTTGTGGGCAGAATCCCGCGTACGACTTTTTTCCATCCC
AGCACCAAATATTTTATCGCGGAAAGGGACAGGGGGTGATGTGGTACGAC
CCCGTGTTCAAAGTTGTCACCATAAAGGGCGAGGAGGTTTGTGGGCAGAA
TCCCGCGTACGACTTTTTTCCATCCCAGCACCAAATATTTTATCGCGGAA
AGGGACAGGGGGTGATGTGGTACGACCCCGTGTTCAAAGTTGTCACCATA
AAGGGCGAGGAGGTGTGGAGACGACGCCACTACCGAGTGAAGTCGGCCGC
AACGCCTGGAACGTTTCGTTTCTCCGTCCTGGACAACGGGGTCGTGTCCA
ACGAGTACTGGCGAATTATCGATGTTTCCGACGACCTGTCGTGGGGTGTG
GAGACGACGCCACTACCGAGTGAAGTCGGCCGCAACGCCTGGAACGTTTC
GTTTCTCCGTCCTGGACAACGGGGTCGTGTCCAACGAGTACTGGCGAATT
ATCGATGTTTCCGACGACCTGTCGTGGGGTGTCTTTTACTACTCCGGTGC
GGCGGCGGTGGCTGGGCAATCGTACACGGGAGCACTGCTGGTAACGCGCG
ACGGCAGCTGGCCTGGCGACGGGGAGATCGATCGCGTCCAAAAGGCGTTT
GACACGTGCGGGATCAAGTTGTGGGAGCTTTTCGAGGTACGACACGCAGC
ACTTTAAGTGTCTTTTACTACTCCGGTGCGGCGGCGGTGGCTGGGCAATC
GTACACGGGAGCACTGCTGGTAACGCGCGACGGCAGCTGGCCTGGCGACG
GGGAGATCGATCGCGTCCAAAAGGCGTTTGACACGTGCGGGATCAAGTTG
TGGGAGCTTTTCGAGGTACGACACGCAGCACTTTAA
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