mRNA_H-elongata_contig72733.14946.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: D7FSB2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSB2_ECTSI) HSP 1 Score: 471 bits (1213), Expect = 7.960e-163 Identity = 215/300 (71.67%), Postives = 251/300 (83.67%), Query Frame = 1
Query: 1 KTRHCWDARSTPVKARHAFNMSNPSPLNNTSYTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEV 900
K R WD + + + +++ S + SY T VPRVTGI ++S +T++CM+ NC++EV++CAKD CRACISCL +CPPNDQVCAYRCITSYET++ME FSLCVLQKNNCMC SAEIP LPDP FRG +TH+ A+D+F+GWLG+E +SWKVVCGQNPAYDFFPSQHQIFYRG+G+G MWYDPVFKVVTIKGEEVWRRRHYRVK A TPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYY+GAA AGQSYTG+LLV+RDG WP E++RV+KAFD+CGIKLWELF V
Sbjct: 176 KDRVLWDTLNNFYERNSSEDLTFLSLVLVDSYVTTVPRVTGIGKDSNPDTVDCMMENCKQEVIDCAKDADCRACISCLTACPPNDQVCAYRCITSYETKTMEMFSLCVLQKNNCMCNSAEIPTLPDPPAQATFRGKPLTHETAQDLFMGWLGKEAYSWKVVCGQNPAYDFFPSQHQIFYRGRGEGQMWYDPVFKVVTIKGEEVWRRRHYRVKPAVTPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYAGAATAAGQSYTGSLLVSRDGDWPEQKEMERVEKAFDSCGIKLWELFPV 475
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A835Z990_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z990_9STRA) HSP 1 Score: 370 bits (951), Expect = 1.020e-123 Identity = 161/272 (59.19%), Postives = 204/272 (75.00%), Query Frame = 1
Query: 94 YTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQER-----FSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELF 894
Y T VP G+ ++SG + C+L+ CR +++ C ++P C+ACI+CL CPPNDQVC+YRCITSYET + E+FSLC++ K+NCM AE+PA PDPAP+T +RG + H+ DI +GWLG E +SWKV CGQNPAYD+FP+QHQIFYRGK +G MWYDPVF+V T+ GE+VWRRRHYRV+ PGTF FSVLDNGV S EYWRI+ ++DLSW YYSGAAA AGQ+Y GALL+T DG WP ++ V AF TCGI++WEL+
Sbjct: 145 YVTEVPAAQGLGKKSGVGMVACILTKCRAQLLACVREPTCKACITCLNKCPPNDQVCSYRCITSYETATFEQFSLCLMTKHNCMGNHAEMPASPDPAPMTHYRGRPLDHETGEDILIGWLGGEDQGLRPWSWKVACGQNPAYDYFPNQHQIFYRGKREGTMWYDPVFQVNTLAGEKVWRRRHYRVRRGTAPGTFFFSVLDNGVTSKEYWRIVAAAEDLSWACVYYSGAAAAAGQAYAGALLITPDGEWPAPAAMEEVTAAFATCGIEMWELY 416
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A5B8MGQ5_9CHLO (VDE domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MGQ5_9CHLO) HSP 1 Score: 352 bits (904), Expect = 1.100e-117 Identity = 163/271 (60.15%), Postives = 202/271 (74.54%), Query Frame = 1
Query: 106 VPRVTGISQESGSETLN---CMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGD-GEIDRVQKAFDTCGIKLWELFEVRH 906
VPRV+ SG +L CML+NC EV +C D CRA + CL C NDQVC+Y+CI SYE+E EKFS CVLQK+NCM KSA++P LP+ P+ FRG +TH+VA +I +GWLG+ER SWKVV GQN AYD FP+QHQIFYRGK + WYDPVF+ T G+ VWRRRHYRV+ +PGTF FSVLDNGV+S+EYWRI D +DDLSW V YYSGAA+ AGQ+YTGA+ V+R G WP D +++R+++A D CGIK+WELFEV +
Sbjct: 100 VPRVS--MDASGGSSLPLVWCMLTNCGREVWDCVSDETCRAALDCLAGCGLNDQVCSYQCIVSYESELFEKFSKCVLQKHNCMRKSAKVPRLPEVEPMHEFRGSALTHEVAEEILIGWLGEERHSWKVVTGQNAAYDVFPNQHQIFYRGKRKRSFWYDPVFQARTFDGDLVWRRRHYRVRRGRSPGTFHFSVLDNGVISDEYWRIADAADDLSWAVLYYSGAASAAGQAYTGAVFVSRTGRWPDDRSQLERIERAHDKCGIKMWELFEVEN 368
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A2K1K5M2_PHYPA (VDE domain-containing protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K5M2_PHYPA) HSP 1 Score: 358 bits (918), Expect = 1.770e-117 Identity = 162/282 (57.45%), Postives = 209/282 (74.11%), Query Frame = 1
Query: 91 SYTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQE---------RFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEVRHA 909
SY T V + + + + ++ CM+ NCR ++++C DP CR ++CL+SC P DQVC+YRCI SYE+E +E F+LCVLQK+NC+ SA+I PD P+ FRG+ VTH++A D+F+GWLG+ ++SW+VV GQN AYD FP Q QIFYRGK +G MWYDPVF+V T+ G+ VWRRRHYRVK PGTF F+VLDNGV+S E+WRI+DV DDLSWG+FYYSGAAA AGQSYTGA+LVT+DGSWP + E R+ A D CGIK+WEL+ V +A
Sbjct: 253 SYVTPVTLLKNL-RATSLASVQCMVKNCRSQILSCILDPNCRQALNCLQSCAPTDQVCSYRCIVSYESEKLEAFTLCVLQKHNCLGLSADILMQPDVQPMKLFRGNPVTHEIAEDLFIGWLGRPNPDSLATPLKYSWRVVAGQNAAYDQFPCQFQIFYRGKAKGSMWYDPVFQVQTLDGKLVWRRRHYRVKRDVVPGTFYFTVLDNGVISKEFWRIVDVKDDLSWGLFYYSGAAAAAGQSYTGAILVTQDGSWPPESEAIRLNSALDKCGIKVWELYRVNNA 533
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A0K9NGW4_ZOSMR (Violaxanthin de-epoxidase, chloroplastic n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NGW4_ZOSMR) HSP 1 Score: 346 bits (888), Expect = 4.480e-115 Identity = 159/273 (58.24%), Postives = 197/273 (72.16%), Query Frame = 1
Query: 94 YTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEVRHAA 912
Y VP + + + G TL+CM++NC EV+NC D CR + CL +C P DQVC+YRCI SYE+ +E FSLCVLQKNNC+ AEIP P P T FR + +THD+A D+FVGWLG ++SW+VV GQNPAYD FP Q+Q+FYRGK + WY+PVFKV T GEEVWRRR Y V+ PG F FSVLDNGVVS E W I+DV DDLSWG+F+YSGAAA AGQSYTGA+LV+ DG +P D E +R+ A D CGIK+WEL+ V +++
Sbjct: 100 YIKPVPSLKNL-RAKGFSTLSCMVNNCGREVINCLLDKNCRKALQCLNACSPTDQVCSYRCIASYESPRLEAFSLCVLQKNNCLELDAEIPRKPVVQPQTTFRSEPLTHDIAEDLFVGWLGNLKWSWRVVAGQNPAYDQFPCQYQLFYRGKSKRSFWYEPVFKVTTFDGEEVWRRRKYSVRRGDVPGKFYFSVLDNGVVSKEAWTIVDVCDDLSWGLFHYSGAAAAAGQSYTGAVLVSPDGMYPPDMEGERLDSALDKCGIKIWELYNVNNSS 371
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A7S2Z7P6_9CHLO (Hypothetical protein n=2 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z7P6_9CHLO) HSP 1 Score: 347 bits (890), Expect = 1.360e-113 Identity = 158/269 (58.74%), Postives = 195/269 (72.49%), Query Frame = 1
Query: 106 VPRVTGISQESGSET--LNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEVRH 906
VPRV+ + G + CML+NCREEVV C DP+C+A + CL C NDQVC+Y+CI S+E+ E+FS CVLQ++NCM +AE+PA P P+ FRG +TH+ A +I +GWLG+ER SWKVV GQN AYD FP+QHQIFYRGK + WYDPVF+ GE VWRRRHYRV+ PGTF FSVLDNGV+SNE+WRI D +DDL+W V YY+GAA+ AGQ+YTGA+ TRDG WP + E RV+ A CGIKLWELFEV +
Sbjct: 246 VPRVSMTAGGGGGSLGLIWCMLTNCREEVVACVTDPECKAALDCLTGCGLNDQVCSYQCIVSHESPLFERFSQCVLQRHNCMKNAAEVPAEPVVEPMAEFRGQPLTHEAAEEILIGWLGKERHSWKVVTGQNAAYDIFPNQHQIFYRGKRKRSFWYDPVFQARKFDGELVWRRRHYRVRRGKVPGTFYFSVLDNGVISNEFWRIADAADDLTWTVLYYAGAASAAGQAYTGAVFATRDGQWPAESEFARVEAAHAKCGIKLWELFEVEN 514
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A2C9UWK7_MANES (VDE domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9UWK7_MANES) HSP 1 Score: 347 bits (890), Expect = 2.120e-113 Identity = 158/273 (57.88%), Postives = 198/273 (72.53%), Query Frame = 1
Query: 94 YTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEVRHAA 912
Y VP + + + G TLNCM+ NC ++VNC DP CR + CL +C P DQVC YRCI SYE+ ++E FSLCVLQKNNC+ A IP P P+ +FRG+E+ H+ A D+FVGWLG +SW+VV GQNPAYD FP Q+Q+FYRGK +G WY+PVF+V T++G VWRRR YRVK PGTF FSVLDNGVVSNE+W +DVSDD SWG+F+YSGAA AGQSYTGA+LV+ DG++P + E +R+ A D CGIK WELF V + +
Sbjct: 241 YIRPVPILKNL-RSKGFSTLNCMVKNCGPQIVNCLLDPNCRKALQCLNNCSPVDQVCNYRCIASYESPNLEAFSLCVLQKNNCLELDARIPERPYVPPMVKFRGEELCHETAEDLFVGWLGTLDWSWRVVAGQNPAYDQFPCQYQLFYRGKAKGSFWYEPVFQVQTLEGRMVWRRRKYRVKRGKVPGTFHFSVLDNGVVSNEFWTTVDVSDDFSWGLFHYSGAARAAGQSYTGAVLVSPDGAYPNEKERERMVSALDKCGIKEWELFTVDNCS 512
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A8J9SBB6_9CHLO (Probable violaxanthin de-epoxidase, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SBB6_9CHLO) HSP 1 Score: 346 bits (887), Expect = 2.250e-113 Identity = 154/272 (56.62%), Postives = 202/272 (74.26%), Query Frame = 1
Query: 94 YTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEVRHA 909
+ +VPR+ + + SG L M+ NC ++ C DP C+A + CL+SC P DQVC+YRCI S+E++ +E FSLC+LQK+NC+ KSA+IPALPDP P+ FRG ++HD+A +F+GWLG+E +SW+VV GQN AYD FP Q+QIFYRGK + +WYDPVF+V T+ G VWRRRHYRV+ A PGTF FSVLDNGV+S E+WRI+DV DDLSW +F YSGAA+ AGQ YTGA+L T DG WP D + +R+ +A GI+ WELF V ++
Sbjct: 209 FIVKVPRLDSL-RASGPLALARMIKNCGPQIFACVNDPDCKAALDCLQSCSPTDQVCSYRCIVSHESQLLEDFSLCILQKHNCLGKSADIPALPDPPPMGSFRGRALSHDLAEALFIGWLGREEWSWRVVAGQNAAYDQFPCQYQIFYRGKAKRSLWYDPVFQVRTLDGRTVWRRRHYRVRRAEIPGTFHFSVLDNGVISKEFWRIVDVPDDLSWALFAYSGAASAAGQVYTGAVLCTPDGIWPADSQEERINRALRLSGIEPWELFRVDNS 479
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: R0FWC2_9BRAS (VDE domain-containing protein n=4 Tax=Camelineae TaxID=980083 RepID=R0FWC2_9BRAS) HSP 1 Score: 346 bits (888), Expect = 2.490e-113 Identity = 159/273 (58.24%), Postives = 200/273 (73.26%), Query Frame = 1
Query: 94 YTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEVRHAA 912
Y VP + + + G TL+CM+ NC +++NC DP CR + CL C P DQVC+YRCI SYE+ E FSLCVLQK+NC+ A+IP P P+T FRG E+ HD A D+FVGWLG+ +SW+VV GQNPAYD FP Q+Q+FYRGKG+ WY+PVF+V T++ + VWRRR Y VK P TFRFSVLDNGVVSNE+W I+DVSDDLSWG+F+Y+GAA VAGQSYTGA+LVT DGS+P + E +R+Q A + CGIK WELF V + +
Sbjct: 222 YIRPVPVLQNL-RSKGFSTLSCMVKNCGPQILNCLLDPNCRKALQCLNQCSPVDQVCSYRCIASYESPYFEAFSLCVLQKHNCLELDAKIPEKPYVPPMTTFRGKELCHDTAEDLFVGWLGELDWSWRVVAGQNPAYDQFPCQYQLFYRGKGKSAFWYEPVFQVRTLEEKLVWRRRRYSVKQGKIPATFRFSVLDNGVVSNEFWTIVDVSDDLSWGLFHYNGAARVAGQSYTGAVLVTPDGSYPAEKEKERLQSALEKCGIKEWELFAVDNCS 493
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Match: A0A7J7C166_TRIWF (Violaxanthin de-epoxidase-related n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7C166_TRIWF) HSP 1 Score: 346 bits (888), Expect = 3.880e-113 Identity = 158/269 (58.74%), Postives = 196/269 (72.86%), Query Frame = 1
Query: 94 YTTRVPRVTGISQESGSETLNCMLSNCREEVVNCAKDPQCRACISCLESCPPNDQVCAYRCITSYETESMEKFSLCVLQKNNCMCKSAEIPALPDPAPLTRFRGDEVTHDVARDIFVGWLGQERFSWKVVCGQNPAYDFFPSQHQIFYRGKGQGVMWYDPVFKVVTIKGEEVWRRRHYRVKSAATPGTFRFSVLDNGVVSNEYWRIIDVSDDLSWGVFYYSGAAAVAGQSYTGALLVTRDGSWPGDGEIDRVQKAFDTCGIKLWELFEV 900
Y VP + + + G TLNCM+ NC E++NC DP CR + CL C P DQVC YRCI SYE++++E FSLCVLQK+NC+ A+IP P P+ +FRG E+ H+ A D+FVGWLG +SW+VV GQNPAYD FP Q+Q+FYRGK +G WY+PVF+V T+ G VWRRR YRVK PGTF FSVLDNGVVSNE+W I+DVSDD SWG+F+YSGAA VAGQSYTGA+LV+ DG++P + E R+ A + CGIK WELF V
Sbjct: 240 YIRPVPILKNL-RAKGFSTLNCMVRNCGTEILNCLLDPNCRKALECLNKCSPVDQVCNYRCIASYESQNLEAFSLCVLQKHNCLQLDAKIPEKPYVPPMVKFRGKELCHETAEDLFVGWLGSLNWSWRVVAGQNPAYDQFPCQYQLFYRGKARGTFWYEPVFRVKTLDGRLVWRRRKYRVKRGKVPGTFNFSVLDNGVVSNEFWTIVDVSDDFSWGLFHYSGAARVAGQSYTGAVLVSPDGAYPNEVESRRLVSALEKCGIKEWELFNV 507 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72733.14946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig72733.14946.1 >prot_H-elongata_contig72733.14946.1 ID=prot_H-elongata_contig72733.14946.1|Name=mRNA_H-elongata_contig72733.14946.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=306bp KTRHCWDARSTPVKARHAFNMSNPSPLNNTSYTTRVPRVTGISQESGSETback to top mRNA from alignment at H-elongata_contig72733:171..2709- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig72733.14946.1 ID=mRNA_H-elongata_contig72733.14946.1|Name=mRNA_H-elongata_contig72733.14946.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2539bp|location=Sequence derived from alignment at H-elongata_contig72733:171..2709- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig72733:171..2709- >mRNA_H-elongata_contig72733.14946.1 ID=mRNA_H-elongata_contig72733.14946.1|Name=mRNA_H-elongata_contig72733.14946.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1836bp|location=Sequence derived from alignment at H-elongata_contig72733:171..2709- (Himanthalia elongata Himel1 dioecious)back to top |