mRNA_H-elongata_contig7252.14920.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7252.14920.1
Unique NamemRNA_H-elongata_contig7252.14920.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7252.14920.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 2.080e-96
Identity = 260/721 (36.06%), Postives = 363/721 (50.35%), Query Frame = 1
Query:    4 ISVADNPFIPGMMLSLALAMEAPTAKEDQRRKLTELQEMLEELLLEVLERLPQTVLGFPGGAAACSRLLEPETTGTRSAAFKGPLKMALSTHHLTITFCTQPLIVDFISYTFGAGLLNLR---------------AR------------IPLDKKNPKMAAG---------------------------VLKKIDPAMIAKHNPAAGLQRNRT--TIFPGAQFILVGLVAMPFTYYRVPLLRMWLDLAVFLVFLAVYTIVVAKMYDNALPNTP-EIALGFYLIVSVLLNLASRVVRLRQNVITEASAVGRSNREYFRDSWNWLDIPAISLLSAGFLLRLWSSTGGDDMGHVGEAFYLLAAPLLFPRILFFAQIHPSQGALIQVMMRMVNKVLQFAIVMIIVMMGFAVSFWASSERYSFGEDDDDPITFSVMWVAVFKAMLGDFGDVESL-NEEPDWVDLVVFVFYLIVMTVMLLNLLIAILSTTHANIEERAEAEIKASKVRTMEHYRRVVANNVLPAPLNLIQLLALVPILMIDLSICRGLYGRLSPTIARSMGSFVFWATSSPVAIALNVLLSFVS---IPTMVNTK-WNQITSLPGNLS------RSVAVVFENLIVVPLALLWLWGVGVVNGARQIMDLAQGRRSAIPALVPLGFHLPQIPNNVGEILMKTEGGLSVHQLSVCLEDPMSDPEVRRDEENRPTTVKHIKLLRNRLEET 1962
            ++ +DNPF+PGM LS+A A  A  A E +RRKL  LQE ++ LLLE+LERLPQTV GF GG   CS + EPE +   +    GPL++AL       TFCTQPL+ DF+S  F  GL  LR               AR            + LD++  +   G                           +   + P ++ +    AGL       T  PGAQF + GLV MP  YYRVP +RM LDLAV+L  L  ++ VV    D   P TP E A  FY++  +               ITE   + R    Y  D WN LD+  + L++ G ++R       D     G A Y L+APL+F R+LFFAQ+    G +IQV+  M  ++++F +V+I+VM+GFA+SF A      FG+ D    TF    + +FKAMLG+     S    + D V   +FV YL+V+ VMLLNLLIA+LST+H+ +E +A+ E K SK R +EHYR VV   +LP P NL+QL+  +P+++ D    R   G  S     ++G   FW    PVA A   +L  +S    P + +T  +++  +  G LS      R + V F  ++  PL L+  W    +   +         R   P +          P +V ++L    GGL    L + LEDP+ DPEVR DE  + TTV++IK LRNRLE+T
Sbjct:  569 VACSDNPFVPGMTLSIAFAKSASVAPEGERRKLLSLQERVDTLLLEILERLPQTVQGFDGGMTGCSAVFEPELSREDARGLPGPLRLALQERQHVQTFCTQPLLTDFLSRRFTYGLPGLRDTQNILGDRRELTNLARGGPGELMSGQKYLALDEEGRRKEDGRSLDRCLLLDLQDKIGQEGKLLDSRKIIDTLLSPCILLQGANCAGLWNTAVSLTFLPGAQFTIAGLVGMPDQYYRVPAMRMLLDLAVYLGMLVFFSTVVLFHEDG--PLTPGEAAFAFYILAGI---------------ITEGQEMRRDFGLYAADHWNILDLLGLGLVTGGLIVRC-----ADGDNSWGRALYALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHAL-----FGDVD----TFGGTCLTLFKAMLGEVDFFGSFPGNQYDSVATALFVIYLVVIAVMLLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCLLPPPFNLVQLILSLPVMVRD----RSGQGTASTRAQEAVGRMAFWLALGPVAAACGTVLWVLSSLFAPFVWHTHFYSKAQARRGALSVGSLLVRYLIVFFWCVLGAPLYLMAFWLTAPMKWLKLRPWCWVWDRRQAPYIASWN------PKSVNDLLEGNSGGLVAGDLQMYLEDPIGDPEVRPDERRKQTTVENIKQLRNRLEKT 1248          
BLAST of mRNA_H-elongata_contig7252.14920.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 2.000e-91
Identity = 245/734 (33.38%), Postives = 359/734 (48.91%), Query Frame = 1
Query:    1 AISVADNPFIPGMMLSLALAMEAPTAKEDQRRKLTELQEMLEELLLEVLERLPQTVLGFPGGAAACSRLLEPETTGTRSAAFKGPLKMALSTHHLTITFCTQPLIVDFISYTFGAGLLNLRAR--IPLDKKN---PKMAAGVLK--KIDPAMIAKHNPAAGLQRNRTTIFPGAQFILVGLVAMPFTYYRVPLLRMWLDLAVFLVFLAVYTIVVAKMYDNALPNTPEIALGFYLIVSVLLNLASRVVRLRQNVITEASAVGRSNREYFRDSWNWLDIPAISLLSAGFLLRLWSSTGGDDMGHVGEAFYLLAAPLLFPRILFFAQIHPSQGALIQVMMRMVNKVLQFAIVMIIVMMGFAVSFWAS-SERYSFGEDDDDPITFSVMWVAVFKAMLGDFGDVESLNEEP-DWVDLVVFVFYLIVMTVMLLNLLIAILSTTHANIEERAEAEIKASKVRTMEHYRRVVANNVLPAPLNLIQLLALVPILMIDL---------------------------------------------SICRGLYGRLSPTIARSMGSFVFWATSSPVAIALNVLLSFVSIPTMVNTKWNQI--TSLPGNLSRSVAVVFENLIVVPLALLWLWGVGVVNGARQIMDL-----------------AQGRRSAI-------PALVPLGFHLPQIPNNVGEILMKTEGGLSVHQLSVCLEDPMSDPEVRRDEENRPTTVKHIKLLRNRLEET 1962
            AIS A+NPFIPGM LS+A       A E ++R+L  +Q  ++ELLLEVLE +PQTV GF G    CS + EPET  +R   ++GPL + LS      T+CT PL++DF++  F  GL +LR    + L  K         G+L   K+    +A     AG   +  T FPGA+FI+ G ++ P +YY+VP LRM LDL  ++  + ++   V         +  EI    Y+   +L               TE   +     EY RD WN LD+ +++LL  G + R++     +       A Y L+APL F RILFFAQI PSQG +IQVM  M   + +F ++M++VM+GF  SF++   E  ++GE          +W A+F+A LG+   ++  +    D V  V+ V YL+++T+M+LNLL+A+LST HA ++  A  E K ++ R ++HY  VV  + LP P NL Q +  +P +++DL                                              + RG +GRL+           FWA   P+A+    +L  +SI       W      SL G ++R + V+F   +  P   L +W  G V G R+ M                     GR +         PA +        +   V  +L + +G L+  +L + L+DPMSDP+VRRDEE R TTV+HIKLLRNRLE T
Sbjct:  933 AISSANNPFIPGMNLSVACTTATRRAMEGEKRRLASMQAAVDELLLEVLEHMPQTVKGFKGEMRDCSAIFEPETVISRFHGYQGPLHVVLSKREQMETYCTIPLVLDFMTRKFTKGLPSLRDTEGVLLSNKGFTQTLYGGGLLAEGKVFFFGMALQRGYAGGALSSITYFPGARFIIAGFLSRPGSYYKVPALRMCLDLVTYISMMIIFGGFVILHEAGDTSDWLEIVFTMYIFGGIL---------------TEFREILEDPWEYMRDQWNLLDVTSLTLLLGGAIQRMYGQVDDES----SRALYALSAPLAFARILFFAQILPSQGPMIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTAYGE----------VWKAIFRATLGETDYLDDFSGTTFDGVATVLLVVYLVLLTIMMLNLLVAVLSTAHAKVDANAGLEYKVTRARLIQHYVNVVEIDRLPPPFNLFQWIFALPFMVLDLCFRTSRRPSTASTNSAXXXXXXXXXXXXXXSINGNEKTKRDRSYFKVARGFFGRLA-----------FWAMLGPIAVLAGWVLWMISIVKAPVVVWQTSGDKSLGGRIARMLLVIFVCAVGAPFWHLVMWVRGGVAGVRRTMRALGCXXXXXXXXXXXXKRGDGRTTTASITARGSPATIVAEGAEDDMEKVVPIVLQEADGALTTSELQIFLDDPMSDPDVRRDEETRATTVEHIKLLRNRLEAT 1626          
BLAST of mRNA_H-elongata_contig7252.14920.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 1.490e-76
Identity = 221/689 (32.08%), Postives = 317/689 (46.01%), Query Frame = 1
Query:    1 AISVADNPFIPGMMLSLALAMEAPTAKEDQRRKLTELQEMLEELLLEVLERLPQTVLGFPGGAAACSRLLEPETTGTRSAAFKGPLKMALSTHHLTITFCTQPLIVDFISYTFGAGLLNLRARIPLDKKNPKMAAGVLKKIDPAMIAK----------HNPAAGLQRNRTTIFPGAQFILVGLVAMPFTYYRVPLLRMWLDLAVFLVFLAVYTIVVAKMYDNALPNTPEIALGFYLIVSVLLNLASRVVRLRQNVITEASAVGRSNREYFRDSWNWLDIPAISLLSAGFLLRLWSSTGGDDMGHVGEAFYLLAAPLLFPRILFFAQIHPSQGALIQVMMRMVNKVLQFAIVMIIVMMGFAVSFWASSERYSFGEDDDDPITFSVMWVAVFKAMLGDFGDVESLNEEP-DWVDLVVFVFYLIVMTVMLLNLLIAILSTTHANIEERAEAEIKASKVRTMEHYRRVVANNVLPAPLNLIQLLALVPILMIDLSICRGLYGRLSPTIARSMGSFVFWATSSPVAIALNVLLSFVSIPTMVNTKWNQITSLPGNLSRSVAVVFENLIVVPLALLWLWGVGVVNGARQIMDLAQ----------------GRRSAIPALVPLGFHLPQIPNN--------VGEILMKTEGGLSVHQLSVCLEDPMSDPEVRRDEENRPTTVKHIKLLRNRLEET 1962
            AIS ADNPFIPGM LS+A  M    A E ++R+L  +Q  ++ELLLEVLE +PQTV GF G    CS + EPET  +R   ++GPL + LS      T+CT PL++DF+S  F  GL +LR    +   N              ++A+              AG   +  T FPGA+FI+ GL++ P +YY+VP LRM LDL  +++ + ++   V         +  EI    Y+   +L               TE   +     EY RD WN LD+ +++LL  G + R++     DD      A Y L+APL F RILFF QI PSQG +IQVM  M   + +F ++M++VM+GF  SF++  +  +         T+ V+W A+F+A LG+    +  +    D V   + V YL+++T+M+LNLL+A+LST HA ++  A  E KA                               P+                          V W TS                            S  G ++R + V+F   +  P   L +W  G V G R+ M                    G R+   ++   GF    +           V  +L + +G L+  +L + L+DPMSDP VRRDEE R TTV+HIKLLRNRLE T
Sbjct:  685 AISSADNPFIPGMNLSVACTMATRRAMEGEKRRLASMQAAIDELLLEVLEHMPQTVKGFKGEMRDCSAIFEPETVISRFHGYQGPLHVVLSKRQQMETYCTIPLVLDFMSRKFTKGLPSLRDTEGVLLNNTSFTEPGQTLYGDGLLAEGRVFFFGMALQRSYAGGTLSSITYFPGARFIIAGLLSRPGSYYKVPALRMCLDLVTYILMMIIFGGFVILHDAGDTFDWMEIVFTMYIFGGIL---------------TEFREILDDPWEYMRDQWNLLDVASLTLLLGGVIQRMYGQV--DDQSS--RALYALSAPLAFARILFFVQILPSQGPIIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETT---------TYGVVWKAIFRATLGETDYFDDFSGTTFDGVATALLVVYLVLLTIMMLNLLVAVLSTAHAKVDADAGLEYKA-------------------------------PV--------------------------VVWQTSGD-------------------------KSRGGRIARMLLVIFACAVGAPFWHLVMWVRGGVAGVRRTMRALGCCXXXXXXXXGGAKRVGGRTPTASMTVRGFPATTVAEGAEHDMEKVVPIVLQEADGALATSELQIFLDDPMSDPAVRRDEETRATTVEHIKLLRNRLEAT 1263          
BLAST of mRNA_H-elongata_contig7252.14920.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 2.600e-75
Identity = 253/828 (30.56%), Postives = 376/828 (45.41%), Query Frame = 1
Query:    4 ISVADNPFIPGMMLSLALAMEAPTAKEDQRRKLTELQEMLEELLLEVLERLPQTVLGFPGGAAACSRLLEPETTGT-RSAAFKGPLKMALSTHHLTITFCTQPLIVDFISYTFGAGLLNL-------------RARIPLDKKNPKMAA----------------------------GVLKKIDPAMIAKHNPAAGLQRNRT--------------------------------------------------TIFPGAQFILVGLVAMPFTYYRVPLLRMWLDLAVFLVFLAVYTIVVAKMYDNALPNTPEIALGFYLIVSVLLNLASRVVRLRQNVITEASAVGRSNREYFRDSWNWLDIPAISLLSAGFLLRLWSSTGGDDMGHVGEAFYLLAAPLLFPRILFFAQIHPSQGALIQVMMRMVNKVLQFAIVMIIVMMGFAVSFWAS-SERYSFGEDDDDPITFSVMWVAVFKAMLGDFGDVESLNEEPDWVDL--VVFVFYLIVMTVMLLNLLIAILSTTHANIEERAEAEIKASKVRTMEHYRRVVANNVLPAPLNLIQLLALVPILMIDLSICRGLYGRLS----PTIARSMGSFVFWATSSPVAIALNVLLSFVSIPTMVNTKWNQITSLPGNLSRSVA----VVFENLIVVPLALLWLW---GVGVVNGARQIMDLAQGRRSAIPALVPLGFHLPQIPNNVGEILMKTEG---------------------------GLSVHQLSVCLEDP-MSDPEVR-RDEENRPTTVKHIKLLRNRLEETEANRLVDVVSRLENALHAREGRLEDIVSAAITSAVDERVG 2082
            +S  DNPFIPG+ LS+AL      A E + R L  LQ+ +++LL  VL+RLPQT+  FPGG   C  +LEPE  G  R   F+GPL++AL     + T C  PL+  ++ Y F AGL +L             R R   +   P  A                                              +G +R R                                                   T  PGAQF+LVG++  P  YY+VP++RM L   V L+ LA+YT V  +  D  L NT EIAL F+++  ++ NL    +++R   +           E++RD WNWL+  ++ LL+ G  +R+ +S    D+ H G A + L+APL+F R+LFF Q    QG +IQ+M  +  ++LQFA+V+  +MMGF VSF+A   E  S+G+          +W+ VFKAMLG+      + E+  + D+  V+ V YL V+ VMLLNLLIA+LST HA ++E+ +   + SKVR M+ Y R+V ++VLP+P NL       P + + L + RG+ G L     P I R     VFW T    AI +   L   S P  V T W + T    +L+ +VA    VV  ++  +P  L W W   G+G+   A  +  LA             G  +P+ P+  G     T G                           G SV ++   LE+P M D   + + E+N+  T++ I   RN L+E    R   V++ L++     + ++ ++  +   S    RVG
Sbjct:  218 LSFVDNPFIPGLSLSVALEESLKNAPERESRCLEALQKAMDDLLRAVLDRLPQTIASFPGGVGGCESVLEPEVAGVLRDRDFRGPLRLALQERQFSKTLCIAPLMFKYMCYRFVAGLPDLQDSNDLLGGREEKRTRTSFETSGPVRAPVASAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSGTRRGRKGRDFLYSDGFVAGSATERLLQGLGWTGRRAAAALTPPPERPSDWETIFSGTFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTAVALESDDGELSNT-EIALTFHVMAEIVSNL----LQMRAGFV-----------EFWRDKWNWLESLSLLLLAGGLTIRIRNS----DV-HQGRALFALSAPLVFSRVLFFGQFLKRQGLVIQMMTILFGEMLQFALVLGTIMMGFTVSFYALFEEAKSYGD----------VWLDVFKAMLGEVSVFSEIYEDSVYRDVARVLLVVYLTVVAVMLLNLLIAVLSTEHAKVDEQQDIAFRESKVRIMKLYVRIVDSDVLPSPFNL-------PQIAVGL-VARGVDGLLGTKTCPKIMREFSVGVFWLTLGSPAILIAWGLWAASAPMAVLTAWRRATYTGRSLTVAVACSSVVVVLHVFALPFVLSWFWVRSGLGLA--ALTLKTLAAALCGGNGGEDGSGRRVPRRPSAAGSGGASTAGSPSACSDVIVADMLRRGNASPGGRHAAGSSVAEIWAQLENPTMPDGLAQGQGEQNQTVTLEEIIRARNHLDEAGRGRGEAVLALLKSVDADLKDQIAELERSVARSVESLRVG 1004          
BLAST of mRNA_H-elongata_contig7252.14920.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 1.820e-70
Identity = 252/791 (31.86%), Postives = 369/791 (46.65%), Query Frame = 1
Query:    1 AISVADNPFIPGMMLSLALAMEAPTAKEDQRRKLTELQEMLEELLLEVLERLPQTVLGFPGGAAACSRLLEPETTGTRSAAFKGPLKMALSTHHLTITFCTQPLIVDFISYTFGAGLLNLR-ARIPLDKKNP--KMAAGVLK-------------------------KID----------------------PAMIAKHNPAAGLQRNRT------------TIFPGAQFILVGLVAMPFTYYRVPLLRMWLDLAVFL---VFLAVYTIVVAKMYDNALPNTPEIALGFYLIVSVLLNLASRVVRLRQNVITEASAVGRSNREYFRDSWNWLDIPAISLLSAGFLLRLWSSTGGDDMGHVGEAFYLLAAPLLFPRILFFAQIHPSQGALIQ-----------VMMRMVNKVLQFAIVMIIVMMGFAVSFWASSERY-SFGEDDDDPITFSVMWVAVFKAMLGDFGDVESLNEEP-DWVDLVVFVFYLIVMTVMLLNLLIAILSTTHANIEERAEAEIKASKVRTMEHYRRVVANNVLPAPLNLIQLLALVPILMIDLSIC---RGLYGRLSPTIARS----------MGSFVFWATSSPVAIALNVLLSFVSI-PTMV-----NTKWNQITSLPGNLSRSVAV--VFENLIVV---------PLALLWLWGVGVVNGARQIMD----------LAQGRRSAIPALVPLGFHLPQIPNNVGEILMKTEGGLSVHQLSVCLEDPMSDPEVRRDEENRPTTVKHIKLLRNRLEETEANRLVDVVSRLENALHAR 2019
            A++ A NPFIPG++LS+ LA  A  A E +RR +T++QE +  LLLEVLERLP++V  F      C  + EP+        F+ PL+M LS       FC  PL++DF+   F   L  LR  +  L   N    ++ G +K                         +ID                      P +    +  A  +  R             T FPGAQ I+ GL A P  Y+RVP +RM LDL V++   V L+ + +  ++   + +  + +  + F  +       A   + +   V  E   + R+   Y  D WN LD+ ++  L+ G + R+      D    +G AFY LAAPLL  R LFF QIHP QG +IQ           V+ RM   +L+F  VM ++++GF ++F      + SFGE           ++ +FKAMLGD    +  + +  D V   + V YL ++TVMLLNLL+AILST+HA + E  E E K S  R M+HY+ VV N++LP P NL+QL+   PI       C    G+ G    T  RS          +G  VFW    PVA+    LL   S+ P M      +   N+  +  G+  RS+ +  +F   +V+         P+ LL LW    +N +R+++            A+ R  A  + +               +L+K+ GG+   +L   L+DPM D +VR+DE++R TTV+HIKLLRNRLE T   +L      LE ALH R
Sbjct:  486 AVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEPKFLDVFED-FEKPLEMMLSRQQQRELFCNVPLVMDFLKRKFTLSLPRLRDPKEVLADSNEILHLSRGGVKGDVCLVLDWGVDVDVQKEDGHLNDEQIDXXXXXXXXQADDHASLRPPWKHPTLFGSKSLLASFRSPRALLQGANDRFPSLTPFPGAQVIVAGLAARPNDYFRVPAMRMVLDLVVYIGMIVALSTFVLFHSQAEKSYVEGSTDEQVVFRTLDWPEATCAK--IFIVGGVFQEGREMARNFGRYCEDQWNALDLLSLLFLTIGLVGRV-----VDWKSQLGPAFYALAAPLLVSRALFFVQIHPLQGPMIQASGETKRFPQRVVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFDSFGES----------FLDLFKAMLGDTDFFKVFSGDTYDVVATFLLVVYLFIVTVMLLNLLVAILSTSHAQVAENIEREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLIVW-PIAWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGSKAIGPVVFWVVLGPVAVIGGSLLWMGSVLPAMYFWRKHHRLQNKRDNGGGDSKRSMHLWSLFLRYVVIIPCWCVFGAPVYLLLLW----LNASRRVLSRCPCNDDTRSTAKSRHGASKSTIE-------------SMLLKSPGGVGAQKLREFLDDPMDDKDVRQDEKDRRTTVEHIKLLRNRLENTSKEQLKG----LEEALHQR 1236          
BLAST of mRNA_H-elongata_contig7252.14920.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 1.220e-69
Identity = 234/762 (30.71%), Postives = 363/762 (47.64%), Query Frame = 1
Query:    1 AISVADNPFIPGMMLSLALAMEAPTAKEDQRRKLTELQEMLEELLLEVLERLPQTVLGFPGGAAACSRLLEPETTGTRSAAFKGPLKMALSTHHLTITFCTQPLIVDFISYTFGAGLLNLRAR-----------------------------IPL----------------------DKKNPKMAAGVLKK---IDPAMIAKH-------NPAAGLQRNRT-----TIFPGAQFILVGLVAMPFTYYRVPLLRMWLDLAVFL---VFLAVYTIVVAKMYDNALPNTPEIALGFYLIVSVLLNLASRVVRLRQNVITEASAVGRSNREYFRDSWNWLDIPAISLLSAGFLLRLWSSTGGDDMGHVGEAFYLLAAPLLFPRILFFAQIHPSQGALIQVMMRMVNKVLQFAIVMIIVMMGFAVSFWASSERY-SFGEDDDDPITFSVMWVAVFKAMLGDFGDVESLNEEP-DWVDLVVFVFYLIVMTVMLLNLLIAILSTTHANIEERAEAEIKASKVRTMEHYRRVVANNVLPAPLNLIQLLALVPILMIDLSIC-RGLYGRLSPTIA------------RSMGSFVFWATSSPVAIALNVLLSFVSIPTMVNTKWNQITSLPGNLSRS--VAVVFENLIVVPLALLWLWGVGVVNGARQIMDLAQGRRSAIPALVPLGFHLPQIPN---NVGEILMKTEGGLSVHQLSVCLEDPMSDPEVRRDEENRPTTVKHIKLLRNRLEETEANRLVDVVSRLENALHAR 2019
            A++ A NPFIPG++LS+ LA  A    E ++R +T++   + +LLLE+LE LP++V  F     A   + EP +  ++   F+ P++M LS    T  FC+ PL++DFI   F  GL ++R +                             +P+                      DKK  +   G L       P ++  +       +P A LQ         T FP AQFI+ GL A    Y+RVP++RM LDL V+L   V L+ + +  ++   + +  + +  + F  +       A+ V+     +  E   + R+   Y  D WN LD+  +   + GF+ R+      D    +G AFY L+APLL  R LFF QIHP QG +  V+ RM   +L+F  VM +VM+GF ++F      + SFGE           ++ +FKAM G+     + + +  D V  ++ V YL ++T++LLNLL+AILST+H+ +++  + E KAS  R M+HY+ VV N++LPAP NL+QL+   PI       C R   G  S                +++G  VFW    PVA+    LL  VS P  V   W +     G+  R   +++      ++P     LW +        ++ L   RR        +     +  +    +  IL++  GG+   +L   L+DPM D +VR+DE ++ TTV+H+KLLRNRLE T    + D +  LENALH R
Sbjct:  304 AVASASNPFIPGLVLSIRLAEAAEKTNEGEQRAITDVHARVNDLLLEILEGLPRSVRSFERDMDASGDMFEPASLPSKD--FETPMEMILSRRQQTEIFCSAPLVMDFIKRKFTLGLPSMRDKKEILADSKEIFHLSGGDVRGNVCLVLGTFVPITVVDADVRREDGPFIDLKAEDMDKKAARADHGQLSAQAWAHPTLLGSNCLLASFRSPRALLQGANDRLPCLTPFPAAQFIVAGLAARSNDYFRVPVMRMVLDLVVYLGVLVALSTFVLFRSQAEQSRVDGSADEEIVFRKLNWSEATCATAVIA--GGMYREWFEMARNYGRYLEDQWNALDLLGLLFFTIGFIARV-----VDWTQQLGPAFYALSAPLLVSRALFFVQIHPLQGPM--VIFRMTTVLLKFGFVMAVVMIGFTMAFHVLFRDFDSFGES----------FLELFKAMFGETTFFNAFSGDTYDAVATMLLVVYLSIVTILLLNLLVAILSTSHSKVQKNIDREFKASIARMMDHYQLVVTNDILPAPFNLLQLVVW-PIAWCVGGCCGRSTSGSQSTRQELNRGREAYERGNKAIGPVVFWVVLGPVAVVGGTLLWIVSTPLSVYL-WRK-HHREGDRKRLSLISLGCRYFFIIP-----LWCILGAPVYLFVLWLGASRRLLCRCNYDVSIAHAESGHFRCTIESILLEGPGGVGAKKLREFLDDPMDDKDVRQDERDKRTTVEHVKLLRNRLENT----IQDELRGLENALHKR 1032          
BLAST of mRNA_H-elongata_contig7252.14920.1 vs. uniprot
Match: D7FR83_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR83_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 3.210e-66
Identity = 207/620 (33.39%), Postives = 309/620 (49.84%), Query Frame = 1
Query:    1 AISVADNPFIPGMMLSLAL--AMEAPTAKEDQRRKLTELQEMLEELLLEVLERLPQTVLGFPGGAAACSRLLEPETTGTRSA-AFKGPLKMALSTHHLTITFCTQPLIVDFISYTFGAGLLNLR--------ARIPLDKKNPKMAAGVLKKIDP-AMIAKHNPAAGL------QRNRTTIFPGAQFILVGLVAMPFTYYRVPLLRMWLDLAVFLVFLAVYTIVVAKMYDNALPNTPEIALGFYLIVSVLLNLASRVVRLRQNVITEASAVGRSNREYFRDSWNWLDIPAISLLSAGFLLRLWSSTGGDDMGHVGEAFYLLAAPLLFPRILFFAQIHPSQGALIQVMMRMVNKVLQFAIVMIIVMMGFAVSFWASSERYSFGEDDDDPITFSVMWVAVFKAMLGDFGDVES-LNEEPDWVDLVVFVFYLIVMTVMLLNLLIAILSTTHANIEERAEAEIKASKVRTMEHYRRVVANNVLPAPLNLIQLLALVPILMIDLSICRGLYGRLSPTIARSMGSFVFWATSSPVAIALNVLLSFVSIPTMVNTKWNQIT-SLPGNLSRSVAVVFENLIVVPLALLWLWGVGVVNGARQIMDLA---QGRRSAIPALVPLGFHLPQI 1791
            A++ A N FIP + LS A   A+ +  ++ D RR L  LQ  ++ +L E L RLPQ+V G  GG AAC+ LLEPE     S    +GPL  AL   H  +TF T PL ++F+   F  GL  L+         +  LD +        L  + P +++    P  G       +    T FPGA FI  G+VA+P +YY+VPL+RM L+  +F   LA +T  V  +++       E+A   Y++ +++L               EA+ + +    Y  D W      A+ +  A FL R       D     G   Y + +PL++ R+L++AQ+ PSQG+ IQV+  M +++ QF +VM +V++GFA+SF+A       GE      T     +  F+AMLG+ G  +  + E+ D    V+ V YL+VMT+MLLNLLIA+LST H  +EE     I+ S+ R   HYR VVA + LPAP NL QL+ L+P  M+D+      Y    P   R +G  VFW    P AI   V +  VS P  +   W + + S+   L R++  +    + VPL L+  W   V    R +       +G RS+ P +  +   L ++
Sbjct:  368 AVASAKNSFIPSLNLSFAFRDAIRSAASERD-RRVLARLQHDVDSILTETLNRLPQSVCGLSGGMAACTALLEPEVADDSSTYGERGPLARALGCTHRIVTFATTPLCMNFMLLKFTRGLPALKDGHSVLILEKSRLDIREEAKGHESLTALCPGSILGGFLPRVGKLLWDDDRLAPLTFFPGAHFIATGVVALPNSYYKVPLMRMALEAMIFTAALAFFTSRVL-LFEKGQLTIAEVAFAIYVVAAIML---------------EATEMWKDLAGYLLDRWKAPHFLALVVALAAFLAR-----AIDPDSSWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYGMASELGQFFVVMGVVILGFAMSFFALFRDVK-GE------TIRGALLDAFQAMLGEVGLFDDFVGEKHDLAATVLLVSYLVVMTIMLLNLLIAVLSTAHGKVEEAVL--IRVSRARVYTHYRWVVATDALPAPFNLAQLVVLLPCKMVDVLFKGNTY----PIARRGVGRIVFWLLLGPGAILGGVFVWLVSTPKALFAIWGKRSLSIASRLGRTMLCLLWITLGVPLCLVVSW---VTQATRVLFGRTFGLEGARSSGPIIYTVDDMLREV 949          
BLAST of mRNA_H-elongata_contig7252.14920.1 vs. uniprot
Match: A0A6H5JMG8_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG8_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 1.570e-65
Identity = 195/542 (35.98%), Postives = 279/542 (51.48%), Query Frame = 1
Query:    1 AISVADNPFIPGMMLSLAL--AMEAPTAKEDQRRKLTELQEMLEELLLEVLERLPQTVLGFPGGAAACSRLLEPETTGTRSA-AFKGPLKMALSTHHLTITFCTQPLIVDFISYTFGAGLLNLR--------ARIPLDKKNPKMAAGVLKKIDP-AMIAKHNPAAGL---QRNRT---TIFPGAQFILVGLVAMPFTYYRVPLLRMWLDLAVFLVFLAVYTIVVAKMYDNALPNTPEIALGFYLIVSVLLNLASRVVRLRQNVITEASAVGRSNREYFRDSWNWLDIPAISLLSAGFLLRLWSSTGGDDMGHVGEAFYLLAAPLLFPRILFFAQIHPSQGALIQVMMRMVNKVLQFAIVMIIVMMGFAVSFWASSERYSFGEDDDDPITFSVMWVAVFKAMLGDFGDVES-LNEEPDWVDLVVFVFYLIVMTVMLLNLLIAILSTTHANIEERAEAEIKASKVRTMEHYRRVVANNVLPAPLNLIQLLALVPILMIDLSICRGLYGRLSPTIARSMGSFVFWATSSPVAIALNVLLSFVSIP 1569
            A++ A N FIP + LS A   A+ +  ++ D RR L  LQ  ++ +L E L+RLPQTV G  GG AAC+ LLEPE     S    +GPL  AL   H  +TF T PL ++F+   F  GL  L          +  LD +        L  + P +++    P  G    + +R    T FPGA FI  G+VA+P +YY+VPL+RM LD  VF   LA +T  V  +++       E+A   Y++ +++L               EA+ + +    Y  D W      A+ +  A FL R       D     G   Y + +PL++ R+L++AQ+ PSQG+ IQV+  M +++ QF +VM +V++GFA+SF+A       GE      T     +  F+AMLG+ G  +  + E+ D    V+ V YL+VMT+MLLNLLIA+LST H  +EE     I+ S+ R   HYR VVA + LPAP NL QL+ L+P  M+DL      Y    P   R +G  VFW    P AI   + +  VS P
Sbjct:  459 AVASAKNSFIPSLNLSFAFRDAIRSAASERD-RRVLARLQHDVDSILTETLDRLPQTVCGLSGGMAACTALLEPEEADDSSTYGERGPLARALGCPHRIVTFATTPLCMNFMLLKFTRGLPALNDGHSVLILEKSRLDVREEAKGHESLTALCPGSILGGFLPRVGKLLWEDDRLAPLTFFPGAHFIATGVVALPNSYYKVPLMRMALDATVFTAALAFFTSRVL-LFEKGSLTIAEMAFAIYVVAAIML---------------EATEMWKDLAGYLLDRWKAPHFLALVVALAAFLAR-----AIDSDSSWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYSMASELGQFFVVMGVVILGFAMSFFALFRDVK-GE------TLRGALLDAFQAMLGEVGLFDDFVGEKHDLAATVLLVSYLLVMTIMLLNLLIAVLSTAHGKVEEAVL--IRVSRARVYTHYRWVVATDALPAPFNLAQLVVLLPCQMVDLLFKSNTY----PIARRGVGRIVFWLVLGPGAILGGIFVWLVSTP 965          
BLAST of mRNA_H-elongata_contig7252.14920.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 3.910e-64
Identity = 198/571 (34.68%), Postives = 281/571 (49.21%), Query Frame = 1
Query:    1 AISVADNPFIPGMMLSLALAMEAPTAKEDQRRKLTELQEMLEELLLEVLERLPQTVLGFP--GGAAACSRLLEPETTGTRSAA--FKGPLKMALSTHHLTITFCTQPLIVDFISYTFGAGLLNLRARIPLDKKNPKM----------------AAGVLKKIDPAMIAKHNPAAGLQRNRTTIFPGAQFILVGLVAMPFTYYRVPLLRMWLDLAVFLVFLAVYTIVVAKMYDNALPNTPEIALGFYLIVSVLLNL---ASRVVRLRQNVITEASAVGRSNREYFRDSWNWLDIPAISLLSAGFLLRL--WSSTGGDDMGHVGEAFYLLAAPLLFPRILFFAQIHPSQGALIQVMMRMVNKVLQFAIVMIIVMMGFAVSFWASSERYSFGEDDDDPITFSVMWVAVFKAMLGDFGDVESLNE-EPDWVDLVVFVFYLIVMTVMLLNLLIAILSTTHANIEERAEAEIKASKVRTMEHYRRVVANNVLPAPLNLIQLLALVPILMIDLSICRGL----------------YGRL------------SPTIARSMGSFVFWATSSPVAIALNVLL 1551
            A++ A NPFIPG+ LS+ L   A  A E +RR L E +  ++E+LLE+ ERLPQTV GF    G  +C+ +LEPE    +S +    GPL M +S      TFC  PLI+DF+S  F  GL +L     L K   ++                  G+   +  A++              T  PGAQFI+  +VA P  YY VP +RM LD  V++  +A  +  V  ++ +   + P    G   I     +L   A  ++ +      E   + R  R YF+D WN LD   +  L  G ++R   W+ST G        AFY L+APL+  R+LFFAQI   QG ++QV+ RM   +LQF  VM++VM+GF ++         F + +D    F    + +FKAMLG+ G  +  +    D V  ++ V YL ++TVMLLNLLIAILST HA ++E      K SK R + HYR VV N+VLPAP NL+QLL  + ++ +    C  L                +GRL                 R+ G  V+W    PVA+A   +L
Sbjct:  529 AVTSAANPFIPGVTLSIRLTEAAKQASEGERRALFETKSSIDEMLLEMFERLPQTVRGFEEQAGTDSCTNVLEPELMRAQSGSNDLGGPLDMIISDPLQLETFCKVPLIMDFLSSKFTLGLPDLMDTAGLLKNEHQLWYLEEDGLFRDEHGLGLDGIPVALLEALLKGVRQGIWDNTPTLTFLPGAQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAALSYFV--LFHSTTGSDP----GLDGIADHRFSLSEGACALIFITAGAYREGREMKRGIRAYFKDQWNVLDALGMLFLFVGLVIRWDDWTSTWGP-------AFYALSAPLVVARVLFFAQILQFQGPMVQVIFRMTATLLQFGAVMLVVMIGFTMAL-----HVIFRDVED----FGDTLLGLFKAMLGETGFFDEFSGGRYDPVATILVVVYLFIVTVMLLNLLIAILSTEHAQVQENTGGAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLLLSLGVIAMTFPYCFLLEAKREQSETERPAIDEHGRLFWGNVWEGARQRHRGARRAFGQLVWWLVLGPVAVAGGAIL 1077          
BLAST of mRNA_H-elongata_contig7252.14920.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 2.850e-63
Identity = 193/507 (38.07%), Postives = 269/507 (53.06%), Query Frame = 1
Query:    1 AISVADNPFIPGMMLSLALAMEAPTAKEDQRRKLTELQEMLEELLLEVLERLPQTVLGFP--GGAAACSRLLEPE----TTGTRSAAFKGPLKMALSTHHLTITFCTQPLIVDFISYTFGAGLLNLRARIPLDKKNPKM----AAGVLKK--------IDPAMIAK--HNPAAGLQRNRT--TIFPGAQFILVGLVAMPFTYYRVPLLRMWLDLAVFLVFLAVYTIVVAKMYDNALPNTPEIALGFYLIVSVLLNL---ASRVVRLRQNVITEASAVGRSNREYFRDSWNWLDIPAISLLSAGFLLRL--WSSTGGDDMGHVGEAFYLLAAPLLFPRILFFAQIHPSQGALIQVMMRMVNKVLQFAIVMIIVMMGFAVSFWASSERYSFGEDDDDPITFSVMWVAVFKAMLGDFGDVESLNE-EPDWVDLVVFVFYLIVMTVMLLNLLIAILSTTHANIEERAEAEIKASKVRTMEHYRRVVANNVLPAPLNLIQLLALVPILMIDL 1437
            A++ A NPF+PG+ LS+ L+  A  A E +RR L + +  ++ELLLE+ ERLPQTV GF    G  +C+ +LEPE    TTG+      GPL M +S      TFC  PLI+DF+S  F  GL +L     L K    +      G+ +         I  A++A        G+  N    T  PG QFI+  +VA P  YY VP +RM LD  V++  +AV +  V         +T E   G   IV+  L+L   A  ++ +      E   + R  R YF+D WN LD   I  L  G ++R   W+ST G        AFY L+APL+  R+LFFAQI    G ++QV+ RM   +LQF  VM++VM+GF ++       + F  D  D   F    + +FKAMLG+ G  +  +    D V  ++ V YL ++TVMLLNLLIAILST HA + E      K SK R + HYR VV N+VLPAP NL+QL+  + ++++ L
Sbjct:  546 AVTSAANPFVPGVTLSIRLSEAAKQASEGERRALFDTKSSIDELLLEMFERLPQTVRGFEEQAGMDSCTNVLEPELMRATTGSNDLG--GPLDMIISDPLQLETFCKVPLIMDFLSSKFTLGLPDLMDTAGLLKNEHHLWYLEEDGLFRDEHGFGSDGIPVALLAALLKGVRQGIWDNTPILTFLPGTQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAVLSSFVL------FHSTTESDSGLDGIVAHRLSLSEGACALIFITAGAYREGREMKRGIRAYFKDQWNVLDALGILFLFVGLVIRWDDWTSTWGP-------AFYALSAPLVVARVLFFAQILQFHGPMVQVIFRMTATLLQFGAVMLVVMIGFTMAL------HVFFRDVAD---FGDTLLGLFKAMLGETGIFDEFSGGRYDPVATILVVVYLCIVTVMLLNLLIAILSTEHAQVMENTAEAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLILSLGVIVLTL 1028          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7252.14920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLB1_ECTSI2.080e-9636.06Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5LDE6_9PHAE2.000e-9133.38Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LT30_ECTSI1.490e-7632.08Ankyrin Repeat Transient Receptor Potential Channe... [more]
D7FMG5_ECTSI2.600e-7530.56Transient receptor potential channel n=1 Tax=Ectoc... [more]
A0A6H5KJG3_9PHAE1.820e-7031.86Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JG42_9PHAE1.220e-6930.71Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FR83_ECTSI3.210e-6633.39Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
A0A6H5JMG8_9PHAE1.570e-6535.98Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FZR6_ECTSI3.910e-6434.68Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5KBU4_9PHAE2.850e-6338.07Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7252contigH-elongata_contig7252:6752..9914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.5
Seed ortholog evalue2e-84
Seed eggNOG ortholog2880.D7FLB1
KEGG koko:K04981
KEGG TC1.A.4.5.8
KEGG Pathwayko04978,map04978
EggNOG free text desc.ion channel activity
EggNOG OGsKOG3614@1,KOG3614@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04040
Hectar predicted targeting categoryother localisation
Exons3
Model size2512
Cds size2115
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7252.14920.1prot_H-elongata_contig7252.14920.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7252 6788..9553 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.588211-UTR-H-elongata_contig7252:6751..67871622931126.588211-UTR-H-elongata_contig7252:6751..6787Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7252 6752..6787 +
1691679708.8790305-UTR-H-elongata_contig7252:6751..67871691679708.8790305-UTR-H-elongata_contig7252:6751..6787Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7252 6752..6787 +
1622931126.6551335-UTR-H-elongata_contig7252:9553..99141622931126.6551335-UTR-H-elongata_contig7252:9553..9914Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7252 9554..9914 +
1691679708.9367938-UTR-H-elongata_contig7252:9553..99141691679708.9367938-UTR-H-elongata_contig7252:9553..9914Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7252 9554..9914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.6028647-CDS-H-elongata_contig7252:6787..74901622931126.6028647-CDS-H-elongata_contig7252:6787..7490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 6788..7490 +
1691679708.898597-CDS-H-elongata_contig7252:6787..74901691679708.898597-CDS-H-elongata_contig7252:6787..7490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 6788..7490 +
1622931126.6237125-CDS-H-elongata_contig7252:7885..81241622931126.6237125-CDS-H-elongata_contig7252:7885..8124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 7886..8124 +
1691679708.9148574-CDS-H-elongata_contig7252:7885..81241691679708.9148574-CDS-H-elongata_contig7252:7885..8124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 7886..8124 +
1622931126.6405036-CDS-H-elongata_contig7252:8380..95531622931126.6405036-CDS-H-elongata_contig7252:8380..9553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 8381..9553 +
1691679708.9273796-CDS-H-elongata_contig7252:8380..95531691679708.9273796-CDS-H-elongata_contig7252:8380..9553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 8381..9553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7252.14920.1

>prot_H-elongata_contig7252.14920.1 ID=prot_H-elongata_contig7252.14920.1|Name=mRNA_H-elongata_contig7252.14920.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=705bp
MMLSLALAMEAPTAKEDQRRKLTELQEMLEELLLEVLERLPQTVLGFPGG
AAACSRLLEPETTGTRSAAFKGPLKMALSTHHLTITFCTQPLIVDFISYT
FGAGLLNLRARIPLDKKNPKMAAGVLKKIDPAMIAKHNPAAGLQRNRTTI
FPGAQFILVGLVAMPFTYYRVPLLRMWLDLAVFLVFLAVYTIVVAKMYDN
ALPNTPEIALGFYLIVSVLLNLASRVVRLRQNVITEASAVGRSNREYFRD
SWNWLDIPAISLLSAGFLLRLWSSTGGDDMGHVGEAFYLLAAPLLFPRIL
FFAQIHPSQGALIQVMMRMVNKVLQFAIVMIIVMMGFAVSFWASSERYSF
GEDDDDPITFSVMWVAVFKAMLGDFGDVESLNEEPDWVDLVVFVFYLIVM
TVMLLNLLIAILSTTHANIEERAEAEIKASKVRTMEHYRRVVANNVLPAP
LNLIQLLALVPILMIDLSICRGLYGRLSPTIARSMGSFVFWATSSPVAIA
LNVLLSFVSIPTMVNTKWNQITSLPGNLSRSVAVVFENLIVVPLALLWLW
GVGVVNGARQIMDLAQGRRSAIPALVPLGFHLPQIPNNVGEILMKTEGGL
SVHQLSVCLEDPMSDPEVRRDEENRPTTVKHIKLLRNRLEETEANRLVDV
VSRLENALHAREGRLEDIVSAAITSAVDERVGALEKRMQKQLDDVCMKLG
TLRA*
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mRNA from alignment at H-elongata_contig7252:6752..9914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7252.14920.1 ID=mRNA_H-elongata_contig7252.14920.1|Name=mRNA_H-elongata_contig7252.14920.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3163bp|location=Sequence derived from alignment at H-elongata_contig7252:6752..9914+ (Himanthalia elongata Himel1 dioecious)
GCTATATCCGTGGCAGACAACCCTTTCATACCTGGTATGATGCTATCACT TGCGCTGGCCATGGAAGCACCTACTGCCAAAGAAGACCAACGGCGAAAGC TGACCGAGCTACAGGAAATGTTGGAGGAGCTACTTCTTGAAGTGCTTGAG CGTTTGCCCCAAACTGTGCTGGGATTCCCTGGAGGAGCAGCGGCGTGCTC ACGTTTGCTCGAGCCTGAAACCACTGGAACTCGTTCAGCGGCATTCAAGG GGCCCTTAAAAATGGCGCTCAGTACGCACCACCTTACAATAACATTCTGC ACGCAGCCATTGATAGTGGACTTCATAAGCTACACGTTTGGCGCTGGTCT CCTAAATCTGCGGGCCAGGATCCCATTGGACAAGAAAAATCCGAAGATGG CCGCCGGAGTGCTCAAGAAAATCGACCCCGCCATGATCGCGAAGCACAAC CCGGCGGCAGGCCTACAGCGAAATCGAACGACGATTTTTCCTGGAGCGCA GTTTATTCTCGTTGGCCTTGTAGCCATGCCCTTCACATACTACCGCGTGC CCCTTCTTCGGATGTGGTTGGATCTTGCTGTGTTCTTGGTTTTTCTTGCT GTTTACACCATCGTCGTGGCCAAGATGTACGACAATGCTTTGCCCAATAC GCCAGAAATCGCGCTAGGCTTCTATCTTATTGTGAGTGTTTTGCTCAATC TAGCCAGTAGAGTCGTACGCCTGAGGCAAAACGTCATCAGTGTATAAGAA TCCCATATTGCTTCCAATAAAATATTTTTAATCGTATTCCATGCCTTGCA CACTTTTATTTATTCCGCTTTGAGCCCGCTGCCCGAATAGGTTTATCATT CGTCGAATGCTTCCTGCGGTTGTCGGAGTTGACGTTCGCGTACAGAGAGA ACTACTCTTTATAGAAATATTTGCATTCAACATCACAATGCTGGAGTGGG TCTAATGTCGTGGAACTAGCTACGTATCCGCGTTTATTCGCTGCATGAGT AGGTGCCGCTTTAGCGTTACAAGCAAAAGACACGATTCGTGATGCCTCGA AGGGCTGGAGCCTCTTTTAACCCTGTTAAAGGTTTATGATTGGTTCGTTG TTTTTCACCTTTCTTTACTAGGCCGCGATTATAGCAGAGGCAAGTGCAGT AGGAAGGAGCAATCGTGAGTACTTCAGGGACAGCTGGAATTGGTTGGACA TACCAGCTATTTCCTTACTCTCTGCTGGGTTCTTACTCCGCCTTTGGAGT TCTACGGGTGGAGATGATATGGGGCATGTTGGGGAAGCATTCTACCTCCT TGCAGCACCGCTCTTGTTTCCTCGCATCCTTTTCTTCGCTCAAATACATC CTTCTCAGGGAGCTTTGATACAGGTGAGATCAATCGCGAAGGGTCCGACG CCGAAATATTTTCTGTGACTCATTTCAAGCCGCGCGTCGCTGGGGTAGAC TTTAAATTACATGCTGTAATATGCCGGATGACGGTAACCGCATGGTAGCG TCTGCTTCGGGGATGTCTACGCGAAATATCTGAACGTAATACGTGATAGT CGTGGTTTTAAGCTTTGCGAAGAAAGTGCAGAGCTTGCAGAGACGACTGA ACTCTCGGTGTCCGCGATCAACCGCCCAGGTGATGATGCGCATGGTAAAC AAGGTGCTACAGTTTGCCATTGTCATGATTATTGTCATGATGGGATTCGC GGTGTCATTTTGGGCGAGTAGCGAGCGCTACAGCTTCGGGGAAGACGATG ACGACCCCATAACCTTCAGCGTTATGTGGGTGGCTGTCTTTAAAGCCATG CTCGGCGACTTTGGCGACGTGGAGTCCTTGAATGAAGAACCGGACTGGGT TGACTTGGTGGTGTTCGTTTTTTACCTAATTGTCATGACCGTCATGCTGC TGAACTTGCTCATTGCGATTTTGAGCACAACGCATGCAAATATTGAGGAA CGTGCGGAGGCCGAAATCAAGGCCTCAAAGGTACGCACAATGGAGCACTA TCGACGAGTTGTGGCAAACAACGTTCTCCCTGCACCGCTCAATTTAATTC AGCTGCTCGCGCTGGTTCCAATCCTGATGATAGATTTATCTATTTGCCGC GGATTATACGGCCGTCTTAGCCCAACAATCGCGAGGAGTATGGGAAGCTT TGTTTTCTGGGCAACATCTAGTCCCGTTGCGATTGCGTTAAACGTTTTAC TGTCGTTCGTATCGATACCAACTATGGTCAACACCAAATGGAATCAGATC ACCTCCCTCCCGGGCAACTTATCTCGCAGTGTTGCAGTCGTGTTCGAGAA TTTGATTGTCGTGCCCTTAGCGCTCCTTTGGCTATGGGGAGTTGGGGTTG TGAACGGGGCGCGACAGATTATGGATCTCGCTCAAGGAAGACGGTCAGCG ATACCAGCATTGGTCCCTTTAGGGTTTCATTTGCCACAAATACCGAATAA TGTTGGGGAAATCCTTATGAAGACAGAGGGTGGCCTCAGCGTCCACCAGC TTTCGGTATGTCTTGAAGACCCTATGAGCGACCCAGAGGTCCGACGAGAT GAGGAAAATCGTCCTACTACAGTGAAACACATCAAGCTACTCCGGAATCG CCTTGAAGAAACAGAAGCAAACCGCCTGGTGGATGTAGTGTCTCGCCTTG AAAACGCCCTACATGCTCGAGAAGGGCGACTAGAGGATATAGTCTCAGCG GCGATTACAAGCGCTGTGGATGAGAGGGTTGGGGCCCTAGAGAAACGTAT GCAAAAACAACTCGACGATGTTTGCATGAAGCTCGGGACTTTGCGCGCGT GATGGCTTTTGGAAGCTTGTTATATGTACTTCGTTCATGAAAACTTTACT TGAGCATTCAGCTGGACTAAGTTACATTGTACAAGGCTTTTGAAGTTATC TATCCGCAGTCATGCGCGGTCTGAAACCAGCTTTCGACAAAAGGGACCTC GAGATGAACATGCGAGGGGATGCGAAAGGGCGAGCGATGGTTTTTTTTGA TCCGCTGGTGGTAACAAGGGTGCATCGAAGGCATCGGACAGGCGTTAAAA CGCATCACCCCTGCATGATGGGAAGGCAAGATTTTGGAGTGATGATGTGC TACCGTGCGGATACGGGAGTTAGTCGGGAAGCAAAACCCAGTACCACCCC TTCACGTTGCGGA
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Coding sequence (CDS) from alignment at H-elongata_contig7252:6752..9914+

>mRNA_H-elongata_contig7252.14920.1 ID=mRNA_H-elongata_contig7252.14920.1|Name=mRNA_H-elongata_contig7252.14920.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4230bp|location=Sequence derived from alignment at H-elongata_contig7252:6752..9914+ (Himanthalia elongata Himel1 dioecious)
ATGATGCTATCACTTGCGCTGGCCATGGAAGCACCTACTGCCAAAGAAGA
CCAACGGCGAAAGCTGACCGAGCTACAGGAAATGTTGGAGGAGCTACTTC
TTGAAGTGCTTGAGCGTTTGCCCCAAACTGTGCTGGGATTCCCTGGAGGA
GCAGCGGCGTGCTCACGTTTGCTCGAGCCTGAAACCACTGGAACTCGTTC
AGCGGCATTCAAGGGGCCCTTAAAAATGGCGCTCAGTACGCACCACCTTA
CAATAACATTCTGCACGCAGCCATTGATAGTGGACTTCATAAGCTACACG
TTTGGCGCTGGTCTCCTAAATCTGCGGGCCAGGATCCCATTGGACAAGAA
AAATCCGAAGATGGCCGCCGGAGTGCTCAAGAAAATCGACCCCGCCATGA
TCGCGAAGCACAACCCGGCGGCAGGCCTACAGCGAAATCGAACGACGATT
TTTCCTGGAGCGCAGTTTATTCTCGTTGGCCTTGTAGCCATGCCCTTCAC
ATACTACCGCGTGCCCCTTCTTCGGATGTGGTTGGATCTTGCTGTGTTCT
TGGTTTTTCTTGCTGTTTACACCATCGTCGTGGCCAAGATGTACGACAAT
GCTTTGCCCAATACGCCAGAAATCGCGCTAGGCTTCTATCTTATTGTGAG
TGTTTTGCTCAATCTAGCCAGTAGAGTCGTACGCCTGAGGCAAAACGTCA
TCAATGATGCTATCACTTGCGCTGGCCATGGAAGCACCTACTGCCAAAGA
AGACCAACGGCGAAAGCTGACCGAGCTACAGGAAATGTTGGAGGAGCTAC
TTCTTGAAGTGCTTGAGCGTTTGCCCCAAACTGTGCTGGGATTCCCTGGA
GGAGCAGCGGCGTGCTCACGTTTGCTCGAGCCTGAAACCACTGGAACTCG
TTCAGCGGCATTCAAGGGGCCCTTAAAAATGGCGCTCAGTACGCACCACC
TTACAATAACATTCTGCACGCAGCCATTGATAGTGGACTTCATAAGCTAC
ACGTTTGGCGCTGGTCTCCTAAATCTGCGGGCCAGGATCCCATTGGACAA
GAAAAATCCGAAGATGGCCGCCGGAGTGCTCAAGAAAATCGACCCCGCCA
TGATCGCGAAGCACAACCCGGCGGCAGGCCTACAGCGAAATCGAACGACG
ATTTTTCCTGGAGCGCAGTTTATTCTCGTTGGCCTTGTAGCCATGCCCTT
CACATACTACCGCGTGCCCCTTCTTCGGATGTGGTTGGATCTTGCTGTGT
TCTTGGTTTTTCTTGCTGTTTACACCATCGTCGTGGCCAAGATGTACGAC
AATGCTTTGCCCAATACGCCAGAAATCGCGCTAGGCTTCTATCTTATTGT
GAGTGTTTTGCTCAATCTAGCCAGTAGAGTCGTACGCCTGAGGCAAAACG
TCATCACAGAGGCAAGTGCAGTAGGAAGGAGCAATCGTGAGTACTTCAGG
GACAGCTGGAATTGGTTGGACATACCAGCTATTTCCTTACTCTCTGCTGG
GTTCTTACTCCGCCTTTGGAGTTCTACGGGTGGAGATGATATGGGGCATG
TTGGGGAAGCATTCTACCTCCTTGCAGCACCGCTCTTGTTTCCTCGCATC
CTTTTCTTCGCTCAAATACATCCTTCTCAGGGAGCTTTGATACAGCAGAG
GCAAGTGCAGTAGGAAGGAGCAATCGTGAGTACTTCAGGGACAGCTGGAA
TTGGTTGGACATACCAGCTATTTCCTTACTCTCTGCTGGGTTCTTACTCC
GCCTTTGGAGTTCTACGGGTGGAGATGATATGGGGCATGTTGGGGAAGCA
TTCTACCTCCTTGCAGCACCGCTCTTGTTTCCTCGCATCCTTTTCTTCGC
TCAAATACATCCTTCTCAGGGAGCTTTGATACAGGTGATGATGCGCATGG
TAAACAAGGTGCTACAGTTTGCCATTGTCATGATTATTGTCATGATGGGA
TTCGCGGTGTCATTTTGGGCGAGTAGCGAGCGCTACAGCTTCGGGGAAGA
CGATGACGACCCCATAACCTTCAGCGTTATGTGGGTGGCTGTCTTTAAAG
CCATGCTCGGCGACTTTGGCGACGTGGAGTCCTTGAATGAAGAACCGGAC
TGGGTTGACTTGGTGGTGTTCGTTTTTTACCTAATTGTCATGACCGTCAT
GCTGCTGAACTTGCTCATTGCGATTTTGAGCACAACGCATGCAAATATTG
AGGAACGTGCGGAGGCCGAAATCAAGGCCTCAAAGGTACGCACAATGGAG
CACTATCGACGAGTTGTGGCAAACAACGTTCTCCCTGCACCGCTCAATTT
AATTCAGCTGCTCGCGCTGGTTCCAATCCTGATGATAGATTTATCTATTT
GCCGCGGATTATACGGCCGTCTTAGCCCAACAATCGCGAGGAGTATGGGA
AGCTTTGTTTTCTGGGCAACATCTAGTCCCGTTGCGATTGCGTTAAACGT
TTTACTGTCGTTCGTATCGATACCAACTATGGTCAACACCAAATGGAATC
AGATCACCTCCCTCCCGGGCAACTTATCTCGCAGTGTTGCAGTCGTGTTC
GAGAATTTGATTGTCGTGCCCTTAGCGCTCCTTTGGCTATGGGGAGTTGG
GGTTGTGAACGGGGCGCGACAGATTATGGATCTCGCTCAAGGAAGACGGT
CAGCGATACCAGCATTGGTCCCTTTAGGGTTTCATTTGCCACAAATACCG
AATAATGTTGGGGAAATCCTTATGAAGACAGAGGGTGGCCTCAGCGTCCA
CCAGCTTTCGGTATGTCTTGAAGACCCTATGAGCGACCCAGAGGTCCGAC
GAGATGAGGAAAATCGTCCTACTACAGTGAAACACATCAAGCTACTCCGG
AATCGCCTTGAAGAAACAGAAGCAAACCGCCTGGTGGATGTAGTGTCTCG
CCTTGAAAACGCCCTACATGCTCGAGAAGGGCGACTAGAGGATATAGTCT
CAGCGGCGATTACAAGCGCTGTGGATGAGAGGGTTGGGGCCCTAGAGAAA
CGTATGCAAAAACAACTCGACGATGTTTGCATGAAGCTCGGGACTTTGCG
CGCGTGAGTGATGATGCGCATGGTAAACAAGGTGCTACAGTTTGCCATTG
TCATGATTATTGTCATGATGGGATTCGCGGTGTCATTTTGGGCGAGTAGC
GAGCGCTACAGCTTCGGGGAAGACGATGACGACCCCATAACCTTCAGCGT
TATGTGGGTGGCTGTCTTTAAAGCCATGCTCGGCGACTTTGGCGACGTGG
AGTCCTTGAATGAAGAACCGGACTGGGTTGACTTGGTGGTGTTCGTTTTT
TACCTAATTGTCATGACCGTCATGCTGCTGAACTTGCTCATTGCGATTTT
GAGCACAACGCATGCAAATATTGAGGAACGTGCGGAGGCCGAAATCAAGG
CCTCAAAGGTACGCACAATGGAGCACTATCGACGAGTTGTGGCAAACAAC
GTTCTCCCTGCACCGCTCAATTTAATTCAGCTGCTCGCGCTGGTTCCAAT
CCTGATGATAGATTTATCTATTTGCCGCGGATTATACGGCCGTCTTAGCC
CAACAATCGCGAGGAGTATGGGAAGCTTTGTTTTCTGGGCAACATCTAGT
CCCGTTGCGATTGCGTTAAACGTTTTACTGTCGTTCGTATCGATACCAAC
TATGGTCAACACCAAATGGAATCAGATCACCTCCCTCCCGGGCAACTTAT
CTCGCAGTGTTGCAGTCGTGTTCGAGAATTTGATTGTCGTGCCCTTAGCG
CTCCTTTGGCTATGGGGAGTTGGGGTTGTGAACGGGGCGCGACAGATTAT
GGATCTCGCTCAAGGAAGACGGTCAGCGATACCAGCATTGGTCCCTTTAG
GGTTTCATTTGCCACAAATACCGAATAATGTTGGGGAAATCCTTATGAAG
ACAGAGGGTGGCCTCAGCGTCCACCAGCTTTCGGTATGTCTTGAAGACCC
TATGAGCGACCCAGAGGTCCGACGAGATGAGGAAAATCGTCCTACTACAG
TGAAACACATCAAGCTACTCCGGAATCGCCTTGAAGAAACAGAAGCAAAC
CGCCTGGTGGATGTAGTGTCTCGCCTTGAAAACGCCCTACATGCTCGAGA
AGGGCGACTAGAGGATATAGTCTCAGCGGCGATTACAAGCGCTGTGGATG
AGAGGGTTGGGGCCCTAGAGAAACGTATGCAAAAACAACTCGACGATGTT
TGCATGAAGCTCGGGACTTTGCGCGCGTGA
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