mRNA_H-elongata_contig72236.14895.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72236.14895.1
Unique NamemRNA_H-elongata_contig72236.14895.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.500e-27
Identity = 49/115 (42.61%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   58 KLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGE-YRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
            KL  TWTGPWR+V    +HV  V++IV G+ ++VHV R+R YADS L V +++++V + +  +GE EM  ++++G  P   G  Y V++ W G E++E TW+P+S  Y DAP+++
Sbjct:   34 KLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 146          
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.770e-25
Identity = 49/115 (42.61%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   58 KLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGE-YRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
            KL  TWTGPWR+V    +HV  V++IV G+ ++VHV R+R YADS L V +++++V + +  +GE EM  ++++G  P   G  Y V++ W G E++E TW+P+S  Y DAP+++
Sbjct:  289 KLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 401          
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.970e-24
Identity = 49/115 (42.61%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   58 KLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGE-YRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
            KL  TWTGPWR+V    +HV  V++IV G+ ++VHV R+R YADS L V +++++V + +  +GE EM  ++++G  P   G  Y V++ W G E++E TW+P+S  Y DAP+++
Sbjct: 1512 KLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 1624          
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.310e-15
Identity = 42/107 (39.25%), Postives = 67/107 (62.62%), Query Frame = 1
Query:   79 GPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGEYRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
            G + IV     HV  V++IV GE ++VHV R+R YAD++L + AE++EV +    +GEFEMA ++ +       G + V++ WVG + EE TWE +S  +  AP+++
Sbjct: 1598 GDYVIVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG-FDVEVEWVGFDKEENTWEELSKMWDAAPQFV 1703          
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6G0RPX5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RPX5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 8.560e-15
Identity = 44/125 (35.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   25 WLGCGNRVPVRKLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGEYRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
            W    +R+   KL+  W GP+R+V    +H  ++E ++  +  EVH  R++ Y DSSL V AE++E   + K      +  +++   +PV   E+ VQ+AW+GLED E +WEP+   YAD P  +
Sbjct:  233 WSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIEHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 353          
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6A4G1U2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G1U2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.300e-14
Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   25 WLGCGNRVPVRKLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGEYRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
            W    +R+   KL+  W GP+R+V    +H  +++ ++  +  EVH  R++ Y DSSL V AE++E   + K      +  +++   +PV   E+ VQ+AW+GLED E +WEP+   YAD P  +
Sbjct:  856 WSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 976          
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6A3KPV3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KPV3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.380e-14
Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   25 WLGCGNRVPVRKLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGEYRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
            W    +R+   KL+  W GP+R+V    +H  +++ ++  +  EVH  R++ Y DSSL V AE++E   + K      +  +++   +PV   E+ VQ+AW+GLED E +WEP+   YAD P  +
Sbjct: 1272 WSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 1392          
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A225VKM9_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VKM9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.380e-12
Identity = 41/125 (32.80%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   25 WLGCGNRVPVRKLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGEYRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
            W    +R+   KL+  W GP+R+V    +H  +V+ ++  +  EVH  R++ Y DSSL V AE++E +         +   V+ V        ++ VQ+AW+GLED E +WEP+ + Y D P  +
Sbjct: 1087 WSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIVQHLITKDKVEVHGSRLKFYCDSSLNVTAELKEHVA--------KQGIVLGVRASITGSTQWEVQVAWIGLEDVENSWEPLRSIYVDVPTKV 1202          
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6H5LBX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBX7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.170e-11
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   70 TWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVI 273
            TWTGPWRIV     HV  V++IV GE ++VHV R+R YAD+SL + A  ++V +    + EFEMA ++
Sbjct:    2 TWTGPWRIVAAVRPHVCGVQNIVWGEDRDVHVARLRFYADASLEITAGSKDVFKHAFTQEEFEMAAIV 69          
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A225V4X5_9STRA (Chromo domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V4X5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.080e-9
Identity = 36/109 (33.03%), Postives = 60/109 (55.05%), Query Frame = 1
Query:   73 WTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGEYRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
            W GP+RIV   S H  V+E ++ G+  EVH  R++ Y DSS+ V     E+L+    +G     D +   +  +   +++V ++W GL+D E +WEP+S+     PK +
Sbjct:    4 WVGPFRIVEIRS-HSFVIERLLTGDHHEVHGTRLKFYEDSSVDVA---EEMLDHISPQGILLAVDKLLKLRFHIATKQWKVLVSWQGLQDNENSWEPLSSLLHGIPKMV 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE6.500e-2742.61Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JVS6_9PHAE6.770e-2542.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE1.970e-2442.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE5.310e-1539.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0RPX5_9STRA8.560e-1535.20Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
A0A6A4G1U2_9STRA3.300e-1434.40Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3KPV3_9STRA3.380e-1434.40Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A225VKM9_9STRA1.380e-1232.80RNA-directed DNA polymerase n=1 Tax=Phytophthora m... [more]
A0A6H5LBX7_9PHAE1.170e-1148.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225V4X5_9STRA1.080e-933.03Chromo domain-containing protein n=1 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72236contigH-elongata_contig72236:1645..2043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue2.5e-09
Seed eggNOG ortholog4792.ETI44068
EggNOG free text desc.Chromo (CHRromatin Organisation MOdifier) domain
EggNOG OGs2CVEU@1,2RRWF@2759,3QHXS@4776
COG Functional cat.B
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931123.5863159-UTR-H-elongata_contig72236:1644..16591622931123.5863159-UTR-H-elongata_contig72236:1644..1659Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72236 1645..1659 +
1691679707.7359593-UTR-H-elongata_contig72236:1644..16591691679707.7359593-UTR-H-elongata_contig72236:1644..1659Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72236 1645..1659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931123.6029232-CDS-H-elongata_contig72236:1659..20431622931123.6029232-CDS-H-elongata_contig72236:1659..2043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72236 1660..2043 +
1691679707.7493415-CDS-H-elongata_contig72236:1659..20431691679707.7493415-CDS-H-elongata_contig72236:1659..2043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72236 1660..2043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72236.14895.1prot_H-elongata_contig72236.14895.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72236 1660..2043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72236.14895.1

>prot_H-elongata_contig72236.14895.1 ID=prot_H-elongata_contig72236.14895.1|Name=mRNA_H-elongata_contig72236.14895.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
MSWWLGCGNRVPVRKLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHV
VRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGEYRV
QIAWVGLEDEEPTWEPMSTTYADAPKYI
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mRNA from alignment at H-elongata_contig72236:1645..2043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72236.14895.1 ID=mRNA_H-elongata_contig72236.14895.1|Name=mRNA_H-elongata_contig72236.14895.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig72236:1645..2043+ (Himanthalia elongata Himel1 dioecious)
TTGAGGTTGGCGATTATGTCTTGGTGGCTCGGGTGTGGAAATCGGGTACC TGTGCGTAAGCTCGTACAGACGTGGACTGGACCGTGGCGTATTGTGCCTG GAGGATCAGAGCATGTTCGTGTAGTGGAGGACATTGTCAAGGGGGAAACC CAGGAAGTGCACGTGGTGCGGATGCGTCCGTATGCTGATTCGTCTCTGGT TGTGGGGGCAGAGGTCCGCGAAGTGCTTGAAATGACCAAGCACAAGGGAG AGTTTGAGATGGCTGACGTGATCAGTGTTGGCAAGGATCCGGTGCAAGTA GGAGAATACCGGGTGCAGATCGCGTGGGTTGGTCTTGAGGATGAGGAGCC AACGTGGGAACCGATGTCAACTACCTACGCCGACGCTCCCAAGTATATA
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Coding sequence (CDS) from alignment at H-elongata_contig72236:1645..2043+

>mRNA_H-elongata_contig72236.14895.1 ID=mRNA_H-elongata_contig72236.14895.1|Name=mRNA_H-elongata_contig72236.14895.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig72236:1645..2043+ (Himanthalia elongata Himel1 dioecious)
ATGTCTTGGTGGCTCGGGTGTGGAAATCGGGTACCTGTGCGTAAGCTCGT
ACAGACGTGGACTGGACCGTGGCGTATTGTGCCTGGAGGATCAGAGCATG
TTCGTGTAGTGGAGGACATTGTCAAGGGGGAAACCCAGGAAGTGCACGTG
GTGCGGATGCGTCCGTATGCTGATTCGTCTCTGGTTGTGGGGGCAGAGGT
CCGCGAAGTGCTTGAAATGACCAAGCACAAGGGAGAGTTTGAGATGGCTG
ACGTGATCAGTGTTGGCAAGGATCCGGTGCAAGTAGGAGAATACCGGGTG
CAGATCGCGTGGGTTGGTCTTGAGGATGAGGAGCCAACGTGGGAACCGAT
GTCAACTACCTACGCCGACGCTCCCAAGTATATAATGTCTTGGTGGCTCG
GGTGTGGAAATCGGGTACCTGTGCGTAAGCTCGTACAGACGTGGACTGGA
CCGTGGCGTATTGTGCCTGGAGGATCAGAGCATGTTCGTGTAGTGGAGGA
CATTGTCAAGGGGGAAACCCAGGAAGTGCACGTGGTGCGGATGCGTCCGT
ATGCTGATTCGTCTCTGGTTGTGGGGGCAGAGGTCCGCGAAGTGCTTGAA
ATGACCAAGCACAAGGGAGAGTTTGAGATGGCTGACGTGATCAGTGTTGG
CAAGGATCCGGTGCAAGTAGGAGAATACCGGGTGCAGATCGCGTGGGTTG
GTCTTGAGGATGAGGAGCCAACGTGGGAACCGATGTCAACTACCTACGCC
GACGCTCCCAAGTATATA
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