mRNA_H-elongata_contig72236.14895.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE) HSP 1 Score: 107 bits (267), Expect = 6.500e-27 Identity = 49/115 (42.61%), Postives = 78/115 (67.83%), Query Frame = 1
Query: 58 KLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGE-YRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
KL TWTGPWR+V +HV V++IV G+ ++VHV R+R YADS L V +++++V + + +GE EM ++++G P G Y V++ W G E++E TW+P+S Y DAP+++
Sbjct: 34 KLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 146
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 107 bits (267), Expect = 6.770e-25 Identity = 49/115 (42.61%), Postives = 78/115 (67.83%), Query Frame = 1
Query: 58 KLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGE-YRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
KL TWTGPWR+V +HV V++IV G+ ++VHV R+R YADS L V +++++V + + +GE EM ++++G P G Y V++ W G E++E TW+P+S Y DAP+++
Sbjct: 289 KLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 401
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 107 bits (267), Expect = 1.970e-24 Identity = 49/115 (42.61%), Postives = 78/115 (67.83%), Query Frame = 1
Query: 58 KLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGE-YRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
KL TWTGPWR+V +HV V++IV G+ ++VHV R+R YADS L V +++++V + + +GE EM ++++G P G Y V++ W G E++E TW+P+S Y DAP+++
Sbjct: 1512 KLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 1624
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 5.310e-15 Identity = 42/107 (39.25%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 79 GPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGEYRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
G + IV HV V++IV GE ++VHV R+R YAD++L + AE++EV + +GEFEMA ++ + G + V++ WVG + EE TWE +S + AP+++
Sbjct: 1598 GDYVIVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG-FDVEVEWVGFDKEENTWEELSKMWDAAPQFV 1703
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6G0RPX5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RPX5_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 8.560e-15 Identity = 44/125 (35.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query: 25 WLGCGNRVPVRKLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGEYRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
W +R+ KL+ W GP+R+V +H ++E ++ + EVH R++ Y DSSL V AE++E + K + +++ +PV E+ VQ+AW+GLED E +WEP+ YAD P +
Sbjct: 233 WSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIEHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 353
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6A4G1U2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G1U2_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 3.300e-14 Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 1
Query: 25 WLGCGNRVPVRKLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGEYRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
W +R+ KL+ W GP+R+V +H +++ ++ + EVH R++ Y DSSL V AE++E + K + +++ +PV E+ VQ+AW+GLED E +WEP+ YAD P +
Sbjct: 856 WSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 976
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6A3KPV3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KPV3_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 3.380e-14 Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 1
Query: 25 WLGCGNRVPVRKLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGEYRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
W +R+ KL+ W GP+R+V +H +++ ++ + EVH R++ Y DSSL V AE++E + K + +++ +PV E+ VQ+AW+GLED E +WEP+ YAD P +
Sbjct: 1272 WSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 1392
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A225VKM9_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VKM9_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.380e-12 Identity = 41/125 (32.80%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 25 WLGCGNRVPVRKLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGEYRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
W +R+ KL+ W GP+R+V +H +V+ ++ + EVH R++ Y DSSL V AE++E + + V+ V ++ VQ+AW+GLED E +WEP+ + Y D P +
Sbjct: 1087 WSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIVQHLITKDKVEVHGSRLKFYCDSSLNVTAELKEHVA--------KQGIVLGVRASITGSTQWEVQVAWIGLEDVENSWEPLRSIYVDVPTKV 1202
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A6H5LBX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBX7_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 1.170e-11 Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 70 TWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVI 273
TWTGPWRIV HV V++IV GE ++VHV R+R YAD+SL + A ++V + + EFEMA ++
Sbjct: 2 TWTGPWRIVAAVRPHVCGVQNIVWGEDRDVHVARLRFYADASLEITAGSKDVFKHAFTQEEFEMAAIV 69
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Match: A0A225V4X5_9STRA (Chromo domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V4X5_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.080e-9 Identity = 36/109 (33.03%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 73 WTGPWRIVPGGSEHVRVVEDIVKGETQEVHVVRMRPYADSSLVVGAEVREVLEMTKHKGEFEMADVISVGKDPVQVGEYRVQIAWVGLEDEEPTWEPMSTTYADAPKYI 399
W GP+RIV S H V+E ++ G+ EVH R++ Y DSS+ V E+L+ +G D + + + +++V ++W GL+D E +WEP+S+ PK +
Sbjct: 4 WVGPFRIVEIRS-HSFVIERLLTGDHHEVHGTRLKFYEDSSVDVA---EEMLDHISPQGILLAVDKLLKLRFHIATKQWKVLVSWQGLQDNENSWEPLSSLLHGIPKMV 108 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72236.14895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig72236.14895.1 >prot_H-elongata_contig72236.14895.1 ID=prot_H-elongata_contig72236.14895.1|Name=mRNA_H-elongata_contig72236.14895.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp MSWWLGCGNRVPVRKLVQTWTGPWRIVPGGSEHVRVVEDIVKGETQEVHVback to top mRNA from alignment at H-elongata_contig72236:1645..2043+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig72236.14895.1 ID=mRNA_H-elongata_contig72236.14895.1|Name=mRNA_H-elongata_contig72236.14895.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig72236:1645..2043+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig72236:1645..2043+ >mRNA_H-elongata_contig72236.14895.1 ID=mRNA_H-elongata_contig72236.14895.1|Name=mRNA_H-elongata_contig72236.14895.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig72236:1645..2043+ (Himanthalia elongata Himel1 dioecious)back to top |