mRNA_H-elongata_contig72010.14878.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72010.14878.1
Unique NamemRNA_H-elongata_contig72010.14878.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig72010.14878.1 vs. uniprot
Match: A0A6H5J5M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5M4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.670e-14
Identity = 97/298 (32.55%), Postives = 135/298 (45.30%), Query Frame = 1 
Query:    1 TAEESLFDDLEVKPPTSKAASSSAFGNEGSTDSGGDGGAFSAFQFMAIAPSAIPAPASAPRDPAAGDFAAAPTATTDQGPKNMSEGMSAFSFLLGAPPAEGDVGVEVQARDERNKEKNAVPGSSSAGA--SSFSFLSEGGSSSKSTF--LAPQASPHTPENGVHPVTCEGRGEIP------QTEKVDGVGVDDPAGGGAAGTIGSSGSSTLGVKTNIEESSSPVFNGVSVGGPSASALM---GVGSEKAGEEVGSKASGVSGAGIEAVTPSRKPSTSVVRKKRTARRVGYGRDESLAT 855
            +AEESLFDDLEVKPP  +   S     +   DS    G FSAFQFMA              +PAA    A P   +        +GMSAFSFL    PA G+ G       E   E  ++PG ++     SSFSFLSEGG    +T   +A +A+P    +   P+   G   +P      ++ +V G+    P      G +    + + G+ +++   S+        GG +A+A     G   + A ++V                PS KPS  VVRKKR  RRVGY R+E+LA+
Sbjct:   67 SAEESLFDDLEVKPPAVEPKPSPM---KPPADSESAAGVFSAFQFMA--------------EPAAASDKATPVGGSPPSAGGGGQGMSAFSFLTEESPAAGESG-------EGQDETVSIPGDAAGKTTPSSFSFLSEGGGGGPATESRVAAEAAPSLVSSS-SPLAATGNVVLPAPSDGKESAEVGGIAGQTP------GDVDQQPAVSSGLASDVSSPSASSSTTAQAGGLAATATAAQEGADKQPAADDV----------------PSWKPSAGVVRKKRAVRRVGYAREETLAS 317
[Close]
BLAST of mRNA_H-elongata_contig72010.14878.1 vs. uniprot
Match: D7FWK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK2_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.340e-13
Identity = 121/383 (31.59%), Postives = 160/383 (41.78%), Query Frame = 1 
Query:  112 GAFSAFQFMAIAPSAIPAPASAPRDPAAGDFAAAPTATTDQGPKNMSEGMSAFSFLLGAPPAEGDVGVEVQARDERNKEKNAVPGSSSAGA---SSFSFLSEGGSSSKSTFLAPQASPHTPENGVH-PVTCEGRGEIPQTEKVDGVGVDDPAGGGAAGTIGSSGSSTLGVKTNIEESSSPVFNGVSVGG---------PSASALMGVGSEKAGEEVGSKASGVSGAGIEAVTPSRKPSTSVVRKKRTARRVGYGRDESLATLA--------GTSGERSSSGGGGVASAANSGAMKSGEESLPSPSSLTAISSIGGGISYVSQEGSGGKLSEVSPSSSVVHRNNSGEASMDDSDVTEAVAMAALAASMAPEHIHRSIAKGDIKQ 1197
            G FSAFQFMA              +PAA    AAP   +         GMSAFSFL    PA G+    V+ +DE       +P   +AG    SSFSFLSEG                        P+   G+ E+P +           A G   G +    + + G+ + +   S+         G             A  G   + A ++V                PS KPS SVVRKKR  RRVGY R+E+LA+ +         T+G ++   GGG AS   +G   SG  S PS ++   +S  GGG           +    SP ++       G  +MDDS V EA AMAALAASMAP  I  ++AKGD+KQ
Sbjct:   20 GVFSAFQFMA--------------EPAAPSDKAAPIGGSPPSAGGGGPGMSAFSFLTDESPAAGN---SVEGQDETVS----IPAGDAAGRTTPSSFSFLSEGXXXXXXXXXXXXXXXXXXXXXXSSPLAATGKAELPASSDGKAAAEFGGAAGQTPGDVDQQPAGSSGLASEVSSPSASSSTTARADGLXXXXXXXXXXXXAQEGAEKKPAADDV----------------PSWKPSASVVRKKRAVRRVGYAREETLASSSMAPPVPRSPTAGRQA---GGGNASTEAAGDQTSG--STPSATAXXGLSRGGGGDYEAPSVPIPSRKVTTSPMTA-------GREAMDDSMVAEAAAMAALAASMAPSEIQGAMAKGDLKQ 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72010.14878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J5M4_9PHAE3.670e-1432.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FWK2_ECTSI5.340e-1331.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72010contigH-elongata_contig72010:1494..3157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog2880.D7FWK2
EggNOG OGs2CNI7@1,2QWH7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1215
Cds size1215
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931121.5221243-CDS-H-elongata_contig72010:1493..15651622931121.5221243-CDS-H-elongata_contig72010:1493..1565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72010 1494..1565 +
1691679707.0058243-CDS-H-elongata_contig72010:1493..15651691679707.0058243-CDS-H-elongata_contig72010:1493..1565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72010 1494..1565 +
1622931121.5431223-CDS-H-elongata_contig72010:2014..31571622931121.5431223-CDS-H-elongata_contig72010:2014..3157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72010 2015..3157 +
1691679707.0178187-CDS-H-elongata_contig72010:2014..31571691679707.0178187-CDS-H-elongata_contig72010:2014..3157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72010 2015..3157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72010.14878.1prot_H-elongata_contig72010.14878.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72010 1494..3157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72010.14878.1

>prot_H-elongata_contig72010.14878.1 ID=prot_H-elongata_contig72010.14878.1|Name=mRNA_H-elongata_contig72010.14878.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=405bp
TAEESLFDDLEVKPPTSKAASSSAFGNEGSTDSGGDGGAFSAFQFMAIAP
SAIPAPASAPRDPAAGDFAAAPTATTDQGPKNMSEGMSAFSFLLGAPPAE
GDVGVEVQARDERNKEKNAVPGSSSAGASSFSFLSEGGSSSKSTFLAPQA
SPHTPENGVHPVTCEGRGEIPQTEKVDGVGVDDPAGGGAAGTIGSSGSST
LGVKTNIEESSSPVFNGVSVGGPSASALMGVGSEKAGEEVGSKASGVSGA
GIEAVTPSRKPSTSVVRKKRTARRVGYGRDESLATLAGTSGERSSSGGGG
VASAANSGAMKSGEESLPSPSSLTAISSIGGGISYVSQEGSGGKLSEVSP
SSSVVHRNNSGEASMDDSDVTEAVAMAALAASMAPEHIHRSIAKGDIKQV
RAEP*
back to top

mRNA from alignment at H-elongata_contig72010:1494..3157+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72010.14878.1 ID=mRNA_H-elongata_contig72010.14878.1|Name=mRNA_H-elongata_contig72010.14878.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1664bp|location=Sequence derived from alignment at H-elongata_contig72010:1494..3157+ (Himanthalia elongata Himel1 dioecious)
ACTGCAGAAGAGTCCCTGTTCGATGACTTGGAAGTCAAGCCGCCTACTTC
CAAGGCAGCGTCAAGCTCGGCCGTGAAAGGGGGGGGGCTTTCTACCGCAC
CCTTGGTGAGCCGCCAGAGCATGGCCGCGCCTGTGGGATGGGATGGGATG
GTGTGGGACAGGGTACGAGGTAGCGGATGAGACTCATCACAGCCCCAATG
TGCCTCTGGCGGTTTGCACGTTTTGAAAAATTGAAGGGGTCCGCTCGATG
ATTAGACCGAACTCTCCAAGCGTTTCACTTTTTTAATTGTATCAGTTATT
CACTCAGCTCGGTCATTCTCCATATCTCCCCCCCTCTCGAGTCCTTGTTT
TGTCTTGCGGTATTATAGTATCTGCGGCCAGTGGTAGATATATAGACGGG
TGAAAGGATCAGCCTTCACATCGGACGAAGTGCCCGCGCGTCGCACAAAT
ACGTCTTCGACAATTTCTTTCCCAAGCTTTCATTTGCCCCCGGACAATTT
TCGCGCGACGATTCGAAACAGTTTGGCAACGAGGGGAGCACCGACAGCGG
TGGCGATGGGGGCGCTTTTTCGGCCTTCCAGTTCATGGCGATCGCCCCTT
CGGCCATCCCCGCGCCAGCGTCGGCACCTCGTGACCCTGCTGCAGGTGAT
TTTGCTGCAGCTCCTACTGCTACTACTGACCAAGGACCGAAAAATATGAG
CGAAGGAATGTCGGCGTTTTCTTTCCTGCTAGGAGCTCCCCCGGCAGAAG
GCGATGTTGGCGTTGAAGTTCAAGCGCGGGATGAACGGAACAAAGAGAAA
AACGCCGTCCCGGGGAGTTCCAGCGCCGGTGCGTCTTCCTTCTCGTTCCT
GTCGGAGGGTGGTTCTTCTTCGAAGTCGACCTTCCTTGCCCCCCAAGCTT
CCCCGCATACCCCCGAGAACGGTGTACACCCCGTGACGTGCGAGGGCCGT
GGCGAGATACCCCAGACGGAGAAGGTTGACGGCGTCGGCGTCGACGATCC
TGCCGGCGGAGGTGCTGCGGGGACAATCGGAAGCAGCGGAAGTTCAACTC
TCGGTGTAAAGACCAATATCGAAGAATCCTCTTCGCCCGTTTTTAATGGC
GTTAGTGTTGGGGGGCCAAGCGCGTCGGCCTTGATGGGTGTGGGGTCGGA
GAAGGCAGGAGAAGAAGTTGGTAGCAAGGCGTCGGGTGTTTCAGGCGCGG
GGATTGAGGCGGTCACCCCCTCGCGGAAACCTTCGACAAGCGTCGTCCGG
AAGAAACGCACGGCTCGGAGGGTGGGGTATGGTCGCGACGAGAGTCTCGC
CACTTTAGCGGGCACTAGCGGCGAAAGAAGCAGCAGCGGCGGCGGCGGCG
TAGCCTCGGCTGCGAACAGCGGTGCCATGAAGAGCGGCGAGGAAAGTCTT
CCGTCGCCGTCTTCGCTGACCGCCATTTCTTCCATTGGGGGAGGAATTTC
TTACGTGTCCCAGGAGGGGAGCGGCGGCAAGCTCTCCGAGGTTTCCCCCA
GCTCATCGGTGGTCCACCGCAATAATAGTGGTGAGGCTTCGATGGACGAC
AGTGACGTCACGGAGGCTGTTGCGATGGCGGCGCTGGCGGCGTCCATGGC
GCCGGAACACATCCACCGTTCCATCGCCAAAGGAGATATCAAACAGGTGC
GCGCGGAGCCTTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig72010:1494..3157+

>mRNA_H-elongata_contig72010.14878.1 ID=mRNA_H-elongata_contig72010.14878.1|Name=mRNA_H-elongata_contig72010.14878.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2430bp|location=Sequence derived from alignment at H-elongata_contig72010:1494..3157+ (Himanthalia elongata Himel1 dioecious)
ACTGCAGAAGAGTCCCTGTTCGATGACTTGGAAGTCAAGCCGCCTACTTC
CAAGGCAGCGTCAAGCTCGGCCACTGCAGAAGAGTCCCTGTTCGATGACT
TGGAAGTCAAGCCGCCTACTTCCAAGGCAGCGTCAAGCTCGGCCTTTGGC
AACGAGGGGAGCACCGACAGCGGTGGCGATGGGGGCGCTTTTTCGGCCTT
CCAGTTCATGGCGATCGCCCCTTCGGCCATCCCCGCGCCAGCGTCGGCAC
CTCGTGACCCTGCTGCAGGTGATTTTGCTGCAGCTCCTACTGCTACTACT
GACCAAGGACCGAAAAATATGAGCGAAGGAATGTCGGCGTTTTCTTTCCT
GCTAGGAGCTCCCCCGGCAGAAGGCGATGTTGGCGTTGAAGTTCAAGCGC
GGGATGAACGGAACAAAGAGAAAAACGCCGTCCCGGGGAGTTCCAGCGCC
GGTGCGTCTTCCTTCTCGTTCCTGTCGGAGGGTGGTTCTTCTTCGAAGTC
GACCTTCCTTGCCCCCCAAGCTTCCCCGCATACCCCCGAGAACGGTGTAC
ACCCCGTGACGTGCGAGGGCCGTGGCGAGATACCCCAGACGGAGAAGGTT
GACGGCGTCGGCGTCGACGATCCTGCCGGCGGAGGTGCTGCGGGGACAAT
CGGAAGCAGCGGAAGTTCAACTCTCGGTGTAAAGACCAATATCGAAGAAT
CCTCTTCGCCCGTTTTTAATGGCGTTAGTGTTGGGGGGCCAAGCGCGTCG
GCCTTGATGGGTGTGGGGTCGGAGAAGGCAGGAGAAGAAGTTGGTAGCAA
GGCGTCGGGTGTTTCAGGCGCGGGGATTGAGGCGGTCACCCCCTCGCGGA
AACCTTCGACAAGCGTCGTCCGGAAGAAACGCACGGCTCGGAGGGTGGGG
TATGGTCGCGACGAGAGTCTCGCCACTTTAGCGGGCACTAGCGGCGAAAG
AAGCAGCAGCGGCGGCGGCGGCGTAGCCTCGGCTGCGAACAGCGGTGCCA
TGAAGAGCGGCGAGGAAAGTCTTCCGTCGCCGTCTTCGCTGACCGCCATT
TCTTCCATTGGGGGAGGAATTTCTTACGTGTCCCAGGAGGGGAGCGGCGG
CAAGCTCTCCGAGGTTTCCCCCAGCTCATCGGTGGTCCACCGCAATAATA
GTGGTGAGGCTTCGATGGACGACAGTGACGTCACGGAGGCTGTTGCGATG
GCGGCGCTGGCGGCGTCCATGGCGCCGGAACACATCCACCGTTCCATCGC
CAAAGGAGATATCAAACAGGTGCGCGCGGAGCCTTAGTTTGGCAACGAGG
GGAGCACCGACAGCGGTGGCGATGGGGGCGCTTTTTCGGCCTTCCAGTTC
ATGGCGATCGCCCCTTCGGCCATCCCCGCGCCAGCGTCGGCACCTCGTGA
CCCTGCTGCAGGTGATTTTGCTGCAGCTCCTACTGCTACTACTGACCAAG
GACCGAAAAATATGAGCGAAGGAATGTCGGCGTTTTCTTTCCTGCTAGGA
GCTCCCCCGGCAGAAGGCGATGTTGGCGTTGAAGTTCAAGCGCGGGATGA
ACGGAACAAAGAGAAAAACGCCGTCCCGGGGAGTTCCAGCGCCGGTGCGT
CTTCCTTCTCGTTCCTGTCGGAGGGTGGTTCTTCTTCGAAGTCGACCTTC
CTTGCCCCCCAAGCTTCCCCGCATACCCCCGAGAACGGTGTACACCCCGT
GACGTGCGAGGGCCGTGGCGAGATACCCCAGACGGAGAAGGTTGACGGCG
TCGGCGTCGACGATCCTGCCGGCGGAGGTGCTGCGGGGACAATCGGAAGC
AGCGGAAGTTCAACTCTCGGTGTAAAGACCAATATCGAAGAATCCTCTTC
GCCCGTTTTTAATGGCGTTAGTGTTGGGGGGCCAAGCGCGTCGGCCTTGA
TGGGTGTGGGGTCGGAGAAGGCAGGAGAAGAAGTTGGTAGCAAGGCGTCG
GGTGTTTCAGGCGCGGGGATTGAGGCGGTCACCCCCTCGCGGAAACCTTC
GACAAGCGTCGTCCGGAAGAAACGCACGGCTCGGAGGGTGGGGTATGGTC
GCGACGAGAGTCTCGCCACTTTAGCGGGCACTAGCGGCGAAAGAAGCAGC
AGCGGCGGCGGCGGCGTAGCCTCGGCTGCGAACAGCGGTGCCATGAAGAG
CGGCGAGGAAAGTCTTCCGTCGCCGTCTTCGCTGACCGCCATTTCTTCCA
TTGGGGGAGGAATTTCTTACGTGTCCCAGGAGGGGAGCGGCGGCAAGCTC
TCCGAGGTTTCCCCCAGCTCATCGGTGGTCCACCGCAATAATAGTGGTGA
GGCTTCGATGGACGACAGTGACGTCACGGAGGCTGTTGCGATGGCGGCGC
TGGCGGCGTCCATGGCGCCGGAACACATCCACCGTTCCATCGCCAAAGGA
GATATCAAACAGGTGCGCGCGGAGCCTTAG
back to top