mRNA_H-elongata_contig71935.14872.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: D7G0F3_ECTSI (Putative RNA-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F3_ECTSI) HSP 1 Score: 109 bits (272), Expect = 4.340e-23 Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 1
Query: 1 QQAFMPPMPVQLPAHLSLINPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWR 213
QQAFM PMPVQLPAH+SLIN +FDP+ AA+EGTRFFV+KT+SED+IHRSVK VWSG + +NRRLDA ++
Sbjct: 102 QQAFMMPMPVQLPAHVSLINAPSFDPEAAAVEGTRFFVMKTFSEDDIHRSVKLSVWSGGEATNRRLDAAFK 172
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: A0A6H5KE00_9PHAE (YTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE00_9PHAE) HSP 1 Score: 107 bits (267), Expect = 3.440e-22 Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 1
Query: 4 QAFMPPMPVQLPAHLSLINPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWR 213
QAFM PMPVQLPAH+SLIN +FDP+ AA+EGTRFFV+KT+SED+IHRSVK VWSG + +NRRLDA ++
Sbjct: 599 QAFMMPMPVQLPAHVSLINAPSFDPEAAAVEGTRFFVMKTFSEDDIHRSVKLSVWSGGEATNRRLDAAFK 668
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: F4W6C6_ACREC (YTH domain family protein 2 n=1 Tax=Acromyrmex echinatior TaxID=103372 RepID=F4W6C6_ACREC) HSP 1 Score: 68.2 bits (165), Expect = 1.060e-9 Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 58 NPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRESTR 225
NP FD A G RFFVIK+YSED+IHRS+KY +W +H N+RLD +RE++R
Sbjct: 17 NPVEFD---QAAPGARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREASR 69
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: A0A0M0J2Q8_9EUKA (Yth domain family protein 2-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J2Q8_9EUKA) HSP 1 Score: 68.6 bits (166), Expect = 2.110e-9 Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 1
Query: 55 INPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRES 219
INP +FDP+ + RF++IK+YSED++H+S+KYGVW+ D NRRLDA +RE+
Sbjct: 56 INPVHFDPNP---KFARFYIIKSYSEDDVHKSIKYGVWASTDTGNRRLDAAYRET 107
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: A0A7R8V4X5_HERIL (Hypothetical protein (Fragment) n=3 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8V4X5_HERIL) HSP 1 Score: 68.9 bits (167), Expect = 2.680e-9 Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 58 NPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRE 216
NP+ D D AA RFFVIK+YSED+IHRS+KYG+W +H N+RLD +RE
Sbjct: 446 NPAELDLDTAA--NARFFVIKSYSEDDIHRSIKYGIWCSTEHGNKRLDQAFRE 496
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: A0A4S2JRT6_9HYME (YTH domain family protein 2 n=1 Tax=Temnothorax longispinosus TaxID=300112 RepID=A0A4S2JRT6_9HYME) HSP 1 Score: 68.6 bits (166), Expect = 3.330e-9 Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 1 QQAFMPPMPVQLPAHLSLINPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRESTR 225
++A MPP P+ H I D D A G RFFVIK+YSED+IHRS+KY +W +H N+RLD +RE++R
Sbjct: 409 KKAGMPPPPIVPGKHNMDIGTWGEDFDQTA-PGARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREASR 482
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: A0A836K0Q2_9HYME (YTHD2 protein (Fragment) n=4 Tax=Attini TaxID=143999 RepID=A0A836K0Q2_9HYME) HSP 1 Score: 68.2 bits (165), Expect = 3.650e-9 Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 58 NPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRESTR 225
NP FD A G RFFVIK+YSED+IHRS+KY +W +H N+RLD +RE++R
Sbjct: 235 NPVEFD---QAAPGARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREASR 287
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: E0VFT2_PEDHC (YTH domain protein, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VFT2_PEDHC) HSP 1 Score: 68.2 bits (165), Expect = 3.790e-9 Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 58 NPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRES 219
NPS FD + +G RFFVIK+YSED+IHRS+KY +W +H N+RLD +RES
Sbjct: 259 NPSEFDMNC---KGARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAFRES 309
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: UPI0003F08DE4 (YTH domain family protein 3-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08DE4) HSP 1 Score: 68.2 bits (165), Expect = 4.250e-9 Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 58 NPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRE 216
NPSNF+ + +G RFF+IK+YSED+IHRS+KY +W +H N+RLD+ +RE
Sbjct: 407 NPSNFNLNA---KGARFFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRE 456
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: A0A158P245_ATTCE (YTH domain-containing protein n=21 Tax=Formicidae TaxID=36668 RepID=A0A158P245_ATTCE) HSP 1 Score: 68.2 bits (165), Expect = 4.370e-9 Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 58 NPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRESTR 225
NP FD A G RFFVIK+YSED+IHRS+KY +W +H N+RLD +RE++R
Sbjct: 399 NPVEFD---QAAPGARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREASR 451 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71935.14872.1 >prot_H-elongata_contig71935.14872.1 ID=prot_H-elongata_contig71935.14872.1|Name=mRNA_H-elongata_contig71935.14872.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=301bp MPPMPVQLPAHLSLINPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGback to top mRNA from alignment at H-elongata_contig71935:268..2059+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71935.14872.1 ID=mRNA_H-elongata_contig71935.14872.1|Name=mRNA_H-elongata_contig71935.14872.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1792bp|location=Sequence derived from alignment at H-elongata_contig71935:268..2059+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71935:268..2059+ >mRNA_H-elongata_contig71935.14872.1 ID=mRNA_H-elongata_contig71935.14872.1|Name=mRNA_H-elongata_contig71935.14872.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1806bp|location=Sequence derived from alignment at H-elongata_contig71935:268..2059+ (Himanthalia elongata Himel1 dioecious)back to top |