prot_H-elongata_contig71935.14872.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig71935.14872.1
Unique Nameprot_H-elongata_contig71935.14872.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length301
Homology
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: D7G0F3_ECTSI (Putative RNA-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F3_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.670e-20
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 0
Query:    1 MPPMPVQLPAHLSLINPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWR 67
            M PMPVQLPAH+SLIN  +FDP+ AA+EGTRFFV+KT+SED+IHRSVK  VWSG + +NRRLDA ++
Sbjct:  106 MMPMPVQLPAHVSLINAPSFDPEAAAVEGTRFFVMKTFSEDDIHRSVKLSVWSGGEATNRRLDAAFK 172          
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: A0A6H5KE00_9PHAE (YTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE00_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 7.160e-20
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 0
Query:    1 MPPMPVQLPAHLSLINPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWR 67
            M PMPVQLPAH+SLIN  +FDP+ AA+EGTRFFV+KT+SED+IHRSVK  VWSG + +NRRLDA ++
Sbjct:  602 MMPMPVQLPAHVSLINAPSFDPEAAAVEGTRFFVMKTFSEDDIHRSVKLSVWSGGEATNRRLDAAFK 668          
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: F4W6C6_ACREC (YTH domain family protein 2 n=1 Tax=Acromyrmex echinatior TaxID=103372 RepID=F4W6C6_ACREC)

HSP 1 Score: 68.2 bits (165), Expect = 1.020e-9
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   16 NPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRESTR 71
            NP  FD    A  G RFFVIK+YSED+IHRS+KY +W   +H N+RLD  +RE++R
Sbjct:   17 NPVEFD---QAAPGARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREASR 69          
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: A0A0M0J2Q8_9EUKA (Yth domain family protein 2-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J2Q8_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 2.020e-9
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 0
Query:   15 INPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRES 69
            INP +FDP+    +  RF++IK+YSED++H+S+KYGVW+  D  NRRLDA +RE+
Sbjct:   56 INPVHFDPNP---KFARFYIIKSYSEDDVHKSIKYGVWASTDTGNRRLDAAYRET 107          
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: A0A7R8V4X5_HERIL (Hypothetical protein (Fragment) n=3 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8V4X5_HERIL)

HSP 1 Score: 68.9 bits (167), Expect = 2.540e-9
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 0
Query:   16 NPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRE 68
            NP+  D D AA    RFFVIK+YSED+IHRS+KYG+W   +H N+RLD  +RE
Sbjct:  446 NPAELDLDTAA--NARFFVIKSYSEDDIHRSIKYGIWCSTEHGNKRLDQAFRE 496          
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: A0A836K0Q2_9HYME (YTHD2 protein (Fragment) n=4 Tax=Attini TaxID=143999 RepID=A0A836K0Q2_9HYME)

HSP 1 Score: 68.2 bits (165), Expect = 3.470e-9
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   16 NPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRESTR 71
            NP  FD    A  G RFFVIK+YSED+IHRS+KY +W   +H N+RLD  +RE++R
Sbjct:  235 NPVEFD---QAAPGARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREASR 287          
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: E0VFT2_PEDHC (YTH domain protein, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VFT2_PEDHC)

HSP 1 Score: 68.2 bits (165), Expect = 3.600e-9
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 0
Query:   16 NPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRES 69
            NPS FD +    +G RFFVIK+YSED+IHRS+KY +W   +H N+RLD  +RES
Sbjct:  259 NPSEFDMNC---KGARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAFRES 309          
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: UPI0003F08DE4 (YTH domain family protein 3-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08DE4)

HSP 1 Score: 68.2 bits (165), Expect = 4.040e-9
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = 0
Query:   16 NPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRE 68
            NPSNF+ +    +G RFF+IK+YSED+IHRS+KY +W   +H N+RLD+ +RE
Sbjct:  407 NPSNFNLNA---KGARFFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRE 456          
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: A0A158P245_ATTCE (YTH domain-containing protein n=21 Tax=Formicidae TaxID=36668 RepID=A0A158P245_ATTCE)

HSP 1 Score: 68.2 bits (165), Expect = 4.140e-9
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   16 NPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRESTR 71
            NP  FD    A  G RFFVIK+YSED+IHRS+KY +W   +H N+RLD  +RE++R
Sbjct:  399 NPVEFD---QAAPGARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREASR 451          
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Match: A0A6I9W194_9HYME (YTH domain-containing family protein 3-like n=2 Tax=Formicidae TaxID=36668 RepID=A0A6I9W194_9HYME)

HSP 1 Score: 68.2 bits (165), Expect = 4.170e-9
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   16 NPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYGVWSGADHSNRRLDAVWRESTR 71
            NP  FD    A  G RFFVIK+YSED+IHRS+KY +W   +H N+RLD  +RE++R
Sbjct:  409 NPVEFD---QAAPGARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYREASR 461          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71935.14872.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0F3_ECTSI4.670e-2070.15Putative RNA-binding protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KE00_9PHAE7.160e-2070.15YTH domain-containing protein n=1 Tax=Ectocarpus s... [more]
F4W6C6_ACREC1.020e-955.36YTH domain family protein 2 n=1 Tax=Acromyrmex ech... [more]
A0A0M0J2Q8_9EUKA2.020e-954.55Yth domain family protein 2-like protein n=1 Tax=C... [more]
A0A7R8V4X5_HERIL2.540e-958.49Hypothetical protein (Fragment) n=3 Tax=Hermetia i... [more]
A0A836K0Q2_9HYME3.470e-955.36YTHD2 protein (Fragment) n=4 Tax=Attini TaxID=1439... [more]
E0VFT2_PEDHC3.600e-957.41YTH domain protein, putative n=1 Tax=Pediculus hum... [more]
UPI0003F08DE44.040e-954.72YTH domain family protein 3-like n=1 Tax=Saccoglos... [more]
A0A158P245_ATTCE4.140e-955.36YTH domain-containing protein n=21 Tax=Formicidae ... [more]
A0A6I9W194_9HYME4.170e-955.36YTH domain-containing family protein 3-like n=2 Ta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007275YTH domainPFAMPF04146YTHcoord: 30..70
e-value: 3.9E-8
score: 33.4
IPR007275YTH domainPROSITEPS50882YTHcoord: 30..194
score: 9.529
NoneNo IPR availableGENE3D3.10.590.10coord: 14..75
e-value: 7.3E-12
score: 46.9
NoneNo IPR availablePANTHERPTHR12357:SF15METHYLATED RNA-BINDING PROTEIN 1coord: 15..71
NoneNo IPR availablePANTHERPTHR12357YTH YT521-B HOMOLOGY DOMAIN-CONTAININGcoord: 15..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71935contigH-elongata_contig71935:280..2059 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71935.14872.1mRNA_H-elongata_contig71935.14872.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig71935 268..2059 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig71935.14872.1 ID=prot_H-elongata_contig71935.14872.1|Name=mRNA_H-elongata_contig71935.14872.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=301bp
MPPMPVQLPAHLSLINPSNFDPDVAAIEGTRFFVIKTYSEDEIHRSVKYG
VWSGADHSNRRLDAVWRESTRSNHSGAQRYRRRSGNLAAATAAAAVAASE
TKLKGGVSGSSSAARGADSASSAPTSGDSKDGDGEKRAQKKGKGRKDGVV
PACGSSAGKASEVVCEGIEEGPQGDGKGDGAMNADAFAAVKEKEELVVEV
KGQEAKDRKESHADVAGGGRGGTDVEKSSTEAAVVDVAEAGSNGNGGDDD
DDSEVSAKTDGDGATDGDNAEDGIVNPAAVGLDDKKRDQGAVASVAAKAG
G
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007275YTH_domain