mRNA_H-elongata_contig71669.14840.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71669.14840.1 vs. uniprot
Match: D7FPZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPZ1_ECTSI) HSP 1 Score: 333 bits (855), Expect = 4.370e-108 Identity = 190/309 (61.49%), Postives = 208/309 (67.31%), Query Frame = 1
Query: 1 QASADDFFLQCNGKHFNSFEESTCRVVFVSTTTFDLNPPAAAVPSTNGPAHGVPALVTVIPSSFEGSTNAAAGAATXXXXXTMEDSDSTLNSDSPPSTLVHSTLRFSPV-----------------------TKPAHGNGAAVVAGAAGTSMPTLSPEASEHGASTCVICMERMESRVLTTVCNHSFHVECLVKWQDSPCPVCRFHHNNASEASTCQECQATDNLWVCLICGSVLCGSRHEDHVLGHYGSTLHAYAIEIETQQVWDFAGDGFVHRLIRNKADGKLVEISDPGQTSKERPQVPARLSDIQ 858
Q+SADDFFLQCNGK FNSFEE+TCRVVFV+ TFDL P+ + P H PA GS A XXXXX + ++ +PP + + FSP+ VA AAG E+ ASTCVICMERMESRVLTTVCNHSFHVECL+KWQDSPCPVCRFHHNNASEASTCQECQA DNLWVCLICGSVLCGSRHEDH+ GHY STLHAYAIEIETQQVWDFAGDGFVHRLI NKADGKLVEISDP QTS+ERPQ+PARLSD+Q
Sbjct: 150 QSSADDFFLQCNGKRFNSFEETTCRVVFVAKATFDL-------PADSSPPHTPPA----------GSAVGATAXXXXXXXXXXGSGGISSSAGTPPQ--LRTARHFSPIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQAAGW----------EYDASTCVICMERMESRVLTTVCNHSFHVECLMKWQDSPCPVCRFHHNNASEASTCQECQAADNLWVCLICGSVLCGSRHEDHIRGHYNSTLHAYAIEIETQQVWDFAGDGFVHRLIHNKADGKLVEISDPEQTSEERPQMPARLSDVQ 429
BLAST of mRNA_H-elongata_contig71669.14840.1 vs. uniprot
Match: A0A6H5K0J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J5_9PHAE) HSP 1 Score: 317 bits (813), Expect = 1.010e-101 Identity = 181/294 (61.56%), Postives = 192/294 (65.31%), Query Frame = 1
Query: 4 ASADDFFLQCNGKHFNSFEESTCRVVFVSTTTFDLNPPAAAVPSTNGPAHGVPALVTVIPSSFEGSTNAAAGAATXXXXXTMEDSDSTLNSDSPPSTLVHSTLRFSPVTKPAHGNGAAV---------VAGAAGTSMPTLSPEASEHGASTCVICMERMESRVLTTVCNHSFHVECLVKWQDSPCPVCRFHHNNASEASTCQECQATDNLWVCLICGSVLCGSRHEDHVLGHYGSTLHAYAIEIETQQVWDFAGDGFVHRLIRNKADGKLVEISDPGQTSKERPQVPARLSDIQ 858
+SADDFFLQCNGK FNSFEE+TCRVVFV+ TFDL P+ + P H PA XXXXX VA AAG E+ ASTCVICME MESRVLTTVCNHSFHVECL+KWQDSPCPVCRFHHNNASEASTCQECQATDNLWVCLICGSVLCGSRHEDH+ GHY STLHAYAIEIETQQVWDFAGDGFVHRLI NKADGKLVEISDP QTS+ERPQ+PARLSD+Q
Sbjct: 8 SSADDFFLQCNGKRFNSFEETTCRVVFVAKATFDL-------PADSSPPHTPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQAAGW----------EYDASTCVICMEHMESRVLTTVCNHSFHVECLMKWQDSPCPVCRFHHNNASEASTCQECQATDNLWVCLICGSVLCGSRHEDHIRGHYNSTLHAYAIEIETQQVWDFAGDGFVHRLIHNKADGKLVEISDPEQTSEERPQMPARLSDVQ 284
BLAST of mRNA_H-elongata_contig71669.14840.1 vs. uniprot
Match: A0A835YPP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPP8_9STRA) HSP 1 Score: 209 bits (532), Expect = 3.370e-59 Identity = 100/170 (58.82%), Postives = 123/170 (72.35%), Query Frame = 1
Query: 352 AAVVAGAAGTSMPTLSPEASEHGASTCVICMERMESRVLTTVCNHSFHVECLVKWQDSPCPVCRFHHNNASEASTCQECQATDNLWVCLICGSVLCGSRHED-HVLGHYGSTLHAYAIEIETQQVWDFAGDGFVHRLIRNKADGKLVEISDPGQTSKERPQVPARLSDIQ 858
AA AG A TS L +E CVIC E++E LTT C H+FH+EC+ WQDSPCPVCRFHHN + + STCQEC + N+ VCLICG V CG R + H+ H+ +TLHAYA+++ETQQVWDFAG GFVHRLI NKADGK+VE ++PG S ERPQ P++LSD+Q
Sbjct: 333 AAAAAGPADTSQ-ALHSGGAEAREDACVICFEKLEGGTLTTACKHTFHIECIALWQDSPCPVCRFHHNGSGDDSTCQECGRSVNVHVCLICGYVGCGGREQGGHMSQHHLATLHAYALDVETQQVWDFAGGGFVHRLIYNKADGKMVEANNPGHASGERPQAPSQLSDVQ 501
BLAST of mRNA_H-elongata_contig71669.14840.1 vs. uniprot
Match: H3GNL2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNL2_PHYRM) HSP 1 Score: 180 bits (456), Expect = 3.390e-49 Identity = 108/286 (37.76%), Postives = 142/286 (49.65%), Query Frame = 1
Query: 1 QASADDFFLQCNGKHFNSFEESTCRVVFVSTTTFDLNPPAAAVPSTNGPAHGVPALVTVIPSSFEGSTNAAAGAATXXXXXTMEDSDSTLNSDSPPSTLVHSTLRFSPVTKPAHGNGAAVVAGAAGTSMPTLSPEASEHGASTCVICMERME---SRVLTTVCNHSFHVECLVKWQDSPCPVCRFHHNNASEASTCQECQATDNLWVCLICGSVLCGSRHEDHVLGHYGSTLHAYAIEIETQQVWDFAGDGFVHRLIRNKADGKLVEISDPGQTSKERPQVPARLS 849
Q AD FFL NGK+FNS E+ C++VFV + FD P G AL + A AAT SP S S+ + + P P TC +C++R++ S +LTT+CNHSFH +CL +W+ S CPVCR+ H + S+C+ C T++LW+CLICG V CG +H HY TLH Y++E+ETQ+VWD+AGDG+VHRLI NK DGK VE +P S ER Q P S
Sbjct: 126 QERADQFFLDHNGKYFNSIEQERCKIVFVRSIEFD--------PVLGGDHPDCDAL-----EEKQTDEETAVAAATPL---------------SPRSERRASSAQMRKLFPP---------------------PPVGMTEIPTCAVCLDRLDASASGILTTLCNHSFHCDCLFRWEGSSCPVCRYSHGDIG--SSCEVCGTTEHLWICLICGHVGCGRYSGEHAKQHYQETLHTYSLELETQRVWDYAGDGYVHRLILNKQDGKFVEFPNPSNMSGERSQNPPTTS 360
BLAST of mRNA_H-elongata_contig71669.14840.1 vs. uniprot
Match: A0A1Z5K2I6_FISSO (BRCA1-associated protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2I6_FISSO) HSP 1 Score: 174 bits (441), Expect = 9.670e-48 Identity = 86/167 (51.50%), Postives = 104/167 (62.28%), Query Frame = 1
Query: 430 CVICMERMESR--VLTTVCNHSFHVECLVKWQDSPCPVCRFHHNNASEA-STCQECQATDNLWVCLICGSVLCGS--------------------RHEDHVLGHYGSTLHAYAIEIETQQVWDFAGDGFVHRLIRNKADGKLVEISDPGQTS-KERPQVPARLSDIQ 858
C +C+E M+ + TTVCNHSFH++CL++WQDSPCPVCR+ H EA S C +C TD+ +VCLICG V CG R H HY TLHAYA++ TQ VWDFAG G+VHRL++NK DGKLVEISDP TS +ER P LSD Q
Sbjct: 142 CAVCLEHMDETTDIFTTVCNHSFHIDCLIQWQDSPCPVCRYDHAGLKEALSQCHQCGTTDHNYVCLICGIVACGGIPSNDTSASACHLPTQEPTPRATSHAQQHYDETLHAYALDTITQHVWDFAGQGYVHRLLQNKEDGKLVEISDPNNTSSQERSSHPTALSDAQ 308
BLAST of mRNA_H-elongata_contig71669.14840.1 vs. uniprot
Match: A0A662YFP2_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFP2_9STRA) HSP 1 Score: 172 bits (437), Expect = 1.190e-47 Identity = 75/144 (52.08%), Postives = 98/144 (68.06%), Query Frame = 1
Query: 427 TCVICMERME---SRVLTTVCNHSFHVECLVKWQDSPCPVCRFHHNNASEASTCQECQATDNLWVCLICGSVLCGSRHEDHVLGHYGSTLHAYAIEIETQQVWDFAGDGFVHRLIRNKADGKLVEISDPGQTSKERPQVPARLS 849
TC +C++R++ S +LTT+CNHSFH +CL +W+ S CPVCR+ H + A C+ C T++LW+CLICG V CG +H HY TLH Y++E+ETQ+VWD+AGDG+VHRLI NK DGK VE P S ER Q P S
Sbjct: 231 TCAVCLDRLDASASGILTTLCNHSFHCDCLFRWEGSSCPVCRYSHGDIGSA--CEVCHTTEHLWICLICGHVGCGRYSGEHAKQHYQETLHTYSLELETQRVWDYAGDGYVHRLILNKQDGKFVEFPSPNNLSDERSQTPPTTS 372
BLAST of mRNA_H-elongata_contig71669.14840.1 vs. uniprot
Match: A0A8K1CCW0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCW0_PYTOL) HSP 1 Score: 175 bits (443), Expect = 2.200e-47 Identity = 75/140 (53.57%), Postives = 101/140 (72.14%), Query Frame = 1
Query: 427 TCVICMERME---SRVLTTVCNHSFHVECLVKWQDSPCPVCRFHHNNASEASTCQECQATDNLWVCLICGSVLCGSRHEDHVLGHYGSTLHAYAIEIETQQVWDFAGDGFVHRLIRNKADGKLVEISDPGQTSKERPQVP 837
TC +C++R++ S +LTT+CNH+FH +CL +W+ S CPVCR+ H + A C+ CQ T++LW+CLICG V CG +H HY T+H Y++E+ETQ+VWD+AGDGFVHRLI NK DGK VE +P TS ER Q+P
Sbjct: 211 TCAVCLDRLDASASGILTTLCNHTFHCDCLFRWEGSSCPVCRYSHGDIGSA--CEVCQTTEHLWICLICGHVGCGRYSGEHAKQHYQETMHTYSLELETQRVWDYAGDGFVHRLILNKQDGKFVEFPNPDATSGERSQLP 348
BLAST of mRNA_H-elongata_contig71669.14840.1 vs. uniprot
Match: A0A7S1CIL5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIL5_9STRA) HSP 1 Score: 170 bits (431), Expect = 4.470e-47 Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 1
Query: 430 CVICMERMESR---VLTTVCNHSFHVECLVKWQDSPCPVCRFHHNNASEASTCQECQATDNLWVCLICGSVLCGSRHEDHVLGHYGSTLHAYAIEIETQQVWDFAGDGFVHRLIRNKADGKLVEISDPGQTSKERPQV 834
C +C+ER++S VLTT+CNHSFH CL +W+DS CPVCRF + + + C C T+ LW+CL+CG V CG +H H+ +T H YA+E+ETQ+VWD+AGDG+VHRLI NK DGKLVE DP ER QV
Sbjct: 47 CPVCLERLDSSATGVLTTLCNHSFHCSCLRRWEDSSCPVCRFAQESEAPPTACSVCGETEKLWMCLVCGHVGCGRYSNEHAKAHFEATAHTYAMELETQRVWDYAGDGYVHRLITNKRDGKLVEFPDPHTAGGERTQV 184
BLAST of mRNA_H-elongata_contig71669.14840.1 vs. uniprot
Match: W2PVR5_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PVR5_PHYPN) HSP 1 Score: 170 bits (430), Expect = 9.590e-47 Identity = 74/144 (51.39%), Postives = 98/144 (68.06%), Query Frame = 1
Query: 427 TCVICMERME---SRVLTTVCNHSFHVECLVKWQDSPCPVCRFHHNNASEASTCQECQATDNLWVCLICGSVLCGSRHEDHVLGHYGSTLHAYAIEIETQQVWDFAGDGFVHRLIRNKADGKLVEISDPGQTSKERPQVPARLS 849
TC +C++R++ S +LTT+CNHSFH +CL +W+ S CPVCR+ H + S+C+ C ++LW+CLICG V CG +H HY TLH Y++E+ETQ+VWD+AGDG+VHRLI NK DGK VE P S ER Q P S
Sbjct: 218 TCAVCLDRLDASASGILTTLCNHSFHCDCLFRWEGSSCPVCRYSHGDIG--SSCEVCGTAEHLWICLICGHVGCGRYSGEHAKQHYQETLHTYSLELETQRVWDYAGDGYVHRLILNKQDGKFVEFPSPNNLSGERSQTPPTTS 359
BLAST of mRNA_H-elongata_contig71669.14840.1 vs. uniprot
Match: A0A507E5E2_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E5E2_9FUNG) HSP 1 Score: 176 bits (447), Expect = 1.270e-46 Identity = 110/284 (38.73%), Postives = 155/284 (54.58%), Query Frame = 1
Query: 4 ASADDFFLQCNGKHFNSFEESTCRVVFVSTTTFDLN--PPAAAVPSTNGPAHGVPALVTVIPSSFEGSTNAAAGAATXXXXXTMEDSDSTLNSDSPPSTLVHSTLRFSPVTKPAHGNGAAVVAGAAGTSMPTLSPEASEHGASTCVICMERME---SRVLTTVCNHSFHVECLVKWQDSPCPVCRFHHNNASEAST---------CQECQATDNLWVCLICGSVLCGSRHEDHVLGHYGSTLHAYAIEIETQQVWDFAGDGFVHRLIRNKADGKLVEISDPGQT 813
+SA +F+ + NG+ ++S E C VV++ + F + PP A P + P+ +PS ++ TXXXX + SD+ S + P+ T SPV P GA T+ P TC +C++RM+ S +LT VC+H+FH CL KW DS CPVCR+ +S A+ C EC +TDNLW+CLICG++ CG E H H+G T H YA+E+ETQ+VWD+AGDG+VHRLI+N+ DGKLVE+ P +T
Sbjct: 321 SSAQEFYKEYNGREYSSLEPEMCHVVYIKSVEFKSHAIPPYAFPPLPDDPSS------LFLPSRLVTTST------TXXXXTAISYSDT--RSSTAPADDATETRLTSPVKSPT---------GAVTTTQLLELP--------TCPVCLDRMDASASGLLTIVCHHTFHCHCLSKWGDSSCPVCRYSSKFSSSATDPDDDDMLNECMECGSTDNLWICLICGNIGCGRYQEGHAQSHFGETQHLYAMELETQRVWDYAGDGYVHRLIQNRTDGKLVELPAPSRT 573 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71669.14840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71669.14840.1 >prot_H-elongata_contig71669.14840.1 ID=prot_H-elongata_contig71669.14840.1|Name=mRNA_H-elongata_contig71669.14840.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp QASADDFFLQCNGKHFNSFEESTCRVVFVSTTTFDLNPPAAAVPSTNGPAback to top mRNA from alignment at H-elongata_contig71669:205..1752- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71669.14840.1 ID=mRNA_H-elongata_contig71669.14840.1|Name=mRNA_H-elongata_contig71669.14840.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1548bp|location=Sequence derived from alignment at H-elongata_contig71669:205..1752- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71669:205..1752- >mRNA_H-elongata_contig71669.14840.1 ID=mRNA_H-elongata_contig71669.14840.1|Name=mRNA_H-elongata_contig71669.14840.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig71669:205..1752- (Himanthalia elongata Himel1 dioecious)back to top |