mRNA_H-elongata_contig71642.14835.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71642.14835.1
Unique NamemRNA_H-elongata_contig71642.14835.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71642.14835.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 8.000e-38
Identity = 83/166 (50.00%), Postives = 103/166 (62.05%), Query Frame = 2 
Query:  158 HVGGHILKKKAMQVSTVCGFCGGLECHTTINAPSGKAVPVMHSTFPYAPRKDARDSAVQLSLKSARVDLDTSPCTNILMKCIFYFQETYI*KYGMADHVARCHNEDTLVEAGTEREKKFKKDYYTVSEMEESKVLKKFKAGKLCPSRDTGSLPPSARRSVSGNGAV 655
            HVGG     K   VSTVCGFCGG+ C +TI+ P G+A P++HST P APR DAR  AV L+L SAR D DTSPCTN+++KC    Q+ YI  YGM DHV RCH  + LV  GT  +K   K+  T+SE E++KVL K KAG+        +LPP    S +  G  
Sbjct: 1076 HVGGDP-GNKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGTGADKF--KEACTISESEKAKVLHKVKAGRPRRRDQGNTLPPPLAHSGAWEGTA 1238
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BLAST of mRNA_H-elongata_contig71642.14835.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.190e-16
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 2 
Query:  386 ILMKCIFYFQETYI*KYGMADHVARCHNEDTLVEAGTEREKKFKKDYYTVSEMEESKVLKKFKAGKLCPSR---DTGSLPPSARRSVSGNGAVGSGVPGTR 679
            +++KC+F  Q+TYI KYGM++HV RCH ED LV AGT  ++   K+ YT+SE E++KVL+KFKAG+  P R      +LP  A  S  GNG  G  + GTR
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRF--KEAYTISESEKAKVLQKFKAGR--PRRRGQGNEALPTGALGSTEGNGTFGRNMSGTR 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71642.14835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE8.000e-3850.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
D7FNW9_ECTSI1.190e-1649.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71642contigH-elongata_contig71642:1699..2561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size700
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71642.14835.1prot_H-elongata_contig71642.14835.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71642 1969..2413 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.5305548-UTR-H-elongata_contig71642:1698..19681622931117.5305548-UTR-H-elongata_contig71642:1698..1968Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71642 1699..1968 -
1691679705.3838162-UTR-H-elongata_contig71642:1698..19681691679705.3838162-UTR-H-elongata_contig71642:1698..1968Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71642 1699..1968 -
1622931117.5688584-UTR-H-elongata_contig71642:2413..25611622931117.5688584-UTR-H-elongata_contig71642:2413..2561Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71642 2414..2561 -
1691679705.4266043-UTR-H-elongata_contig71642:2413..25611691679705.4266043-UTR-H-elongata_contig71642:2413..2561Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71642 2414..2561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.5452862-CDS-H-elongata_contig71642:1968..22111622931117.5452862-CDS-H-elongata_contig71642:1968..2211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71642 1969..2211 -
1691679705.402897-CDS-H-elongata_contig71642:1968..22111691679705.402897-CDS-H-elongata_contig71642:1968..2211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71642 1969..2211 -
1622931117.5568228-CDS-H-elongata_contig71642:2374..24131622931117.5568228-CDS-H-elongata_contig71642:2374..2413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71642 2375..2413 -
1691679705.4157393-CDS-H-elongata_contig71642:2374..24131691679705.4157393-CDS-H-elongata_contig71642:2374..2413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71642 2375..2413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71642.14835.1

>prot_H-elongata_contig71642.14835.1 ID=prot_H-elongata_contig71642.14835.1|Name=mRNA_H-elongata_contig71642.14835.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MRMHVGGHILKKKAMQVSTVCGFCGGLECHTTINAPSGKAVPVMHSTFPY
APRKDARDSAVQLSLKSARVDLDTSPCTNILMKCIFYFQETYI*
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mRNA from alignment at H-elongata_contig71642:1699..2561-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71642.14835.1 ID=mRNA_H-elongata_contig71642.14835.1|Name=mRNA_H-elongata_contig71642.14835.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=863bp|location=Sequence derived from alignment at H-elongata_contig71642:1699..2561- (Himanthalia elongata Himel1 dioecious)
CTGTCAGCCGCTGTGTACATAGCCAGCTCTTTGGCATGGAGACCTCTGCG
ATGGTGGACACCCCGCCCACCCCGAGTTCATCTCCAGTAGCCTCTGCCAC
GAGCGAAGGCCCCATTGTGTCTTCTGGAGCAGCCGCTACCGCGCGAAAAT
GAGGATGCACGTCGGTGGGCATATACTGAAGAAAAAGGTGTGTACTAGGC
TTGATTGCTCGTATTTGCTGGTTTCCCAAGTTGCGCGTTGAAATTGAATT
AAGCGCGAAGGTGGACGATAGTCTTTGCTCAATGCGTGCCCACATGTTAC
ATGCATCGAAGCTTCACTGGCCTTGTACCCTCTCTCTTATCCCATCGCAG
GCTATGCAGGTGAGCACTGTATGCGGCTTCTGCGGTGGCCTCGAATGCCA
TACCACAATCAACGCTCCATCCGGCAAGGCTGTGCCCGTCATGCACTCCA
CCTTCCCCTATGCTCCTCGCAAGGACGCGCGTGATTCGGCTGTCCAACTT
AGCCTGAAAAGTGCGAGGGTAGACTTAGACACCTCACCATGCACCAACAT
TCTCATGAAGTGCATTTTCTACTTTCAGGAGACGTACATATAGAAGTATG
GTATGGCCGACCACGTCGCCAGATGCCACAACGAGGACACACTAGTTGAG
GCCGGCACAGAGAGGGAAAAGAAGTTCAAGAAGGACTATTATACTGTGTC
GGAGATGGAGGAGAGCAAGGTGCTGAAGAAGTTCAAAGCCGGGAAGCTTT
GCCCTAGTCGCGACACCGGCAGTCTCCCTCCTAGCGCACGTAGGAGCGTG
TCGGGGAATGGCGCTGTGGGCAGCGGTGTGCCGGGCACCCGGCCCCAAGG
AGAGCAGGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig71642:1699..2561-

>mRNA_H-elongata_contig71642.14835.1 ID=mRNA_H-elongata_contig71642.14835.1|Name=mRNA_H-elongata_contig71642.14835.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig71642:1699..2561- (Himanthalia elongata Himel1 dioecious)
ATGAGGATGCACGTCGGTGGGCATATACTGAAGAAAAAGATGAGGATGCA
CGTCGGTGGGCATATACTGAAGAAAAAGGCTATGCAGGTGAGCACTGTAT
GCGGCTTCTGCGGTGGCCTCGAATGCCATACCACAATCAACGCTCCATCC
GGCAAGGCTGTGCCCGTCATGCACTCCACCTTCCCCTATGCTCCTCGCAA
GGACGCGCGTGATTCGGCTGTCCAACTTAGCCTGAAAAGTGCGAGGGTAG
ACTTAGACACCTCACCATGCACCAACATTCTCATGAAGTGCATTTTCTAC
TTTCAGGAGACGTACATATAGGCTATGCAGGTGAGCACTGTATGCGGCTT
CTGCGGTGGCCTCGAATGCCATACCACAATCAACGCTCCATCCGGCAAGG
CTGTGCCCGTCATGCACTCCACCTTCCCCTATGCTCCTCGCAAGGACGCG
CGTGATTCGGCTGTCCAACTTAGCCTGAAAAGTGCGAGGGTAGACTTAGA
CACCTCACCATGCACCAACATTCTCATGAAGTGCATTTTCTACTTTCAGG
AGACGTACATATAG
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