prot_H-elongata_contig71642.14835.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig71642.14835.1
Unique Nameprot_H-elongata_contig71642.14835.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length94
Homology
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BLAST of mRNA_H-elongata_contig71642.14835.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.130e-25
Identity = 52/90 (57.78%), Postives = 63/90 (70.00%), Query Frame = 0 
Query:    4 HVGGHILKKKAMQVSTVCGFCGGLECHTTINAPSGKAVPVMHSTFPYAPRKDARDSAVQLSLKSARVDLDTSPCTNILMKCIFYFQETYI 93
            HVGG     K   VSTVCGFCGG+ C +TI+ P G+A P++HST P APR DAR  AV L+L SAR D DTSPCTN+++KC    Q+ YI
Sbjct: 1076 HVGGDP-GNKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYI 1164
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71642.14835.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE3.130e-2557.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71642contigH-elongata_contig71642:1969..2413 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71642.14835.1mRNA_H-elongata_contig71642.14835.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig71642 1699..2561 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig71642.14835.1 ID=prot_H-elongata_contig71642.14835.1|Name=mRNA_H-elongata_contig71642.14835.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MRMHVGGHILKKKAMQVSTVCGFCGGLECHTTINAPSGKAVPVMHSTFPY
APRKDARDSAVQLSLKSARVDLDTSPCTNILMKCIFYFQETYI*
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