mRNA_H-elongata_contig71345.14795.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71345.14795.1
Unique NamemRNA_H-elongata_contig71345.14795.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71345.14795.1 vs. uniprot
Match: D8LQT2_ECTSI (Robl_LC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT2_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 8.810e-63
Identity = 102/122 (83.61%), Postives = 107/122 (87.70%), Query Frame = 1
Query:    1 SQQVNEVEEVIKELKTNPGFSAYVIMNNEGIVIKYESMEYQAAVHHAALVLDLVRKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHDNFTLVVVQQDPGANKKVAREEEGVEGEEDKKD 366
            SQQVNEVEEVIKELKTNPGFSAYVIMNN+GIVIKYESMEY+AAVHHAALVLDL  KSKKYMRELFEPPDNDVESLRLRTGEHEMIIALH++FTLVVVQQDP             EGEE+KKD
Sbjct:    3 SQQVNEVEEVIKELKTNPGFSAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQQDPNXXXXXXXXXXXXEGEEEKKD 124          
BLAST of mRNA_H-elongata_contig71345.14795.1 vs. uniprot
Match: A0A835ZE71_9STRA (Robl_LC7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE71_9STRA)

HSP 1 Score: 174 bits (442), Expect = 3.210e-54
Identity = 90/120 (75.00%), Postives = 101/120 (84.17%), Query Frame = 1
Query:    7 QVNEVEEVIKELKTNPGFSAYVIMNNEGIVIKYESMEYQAAVHHAALVLDLVRKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHDNFTLVVVQQDPGANKKVAREEEGVEGEEDKKD 366
            Q NEVEEVIKELK NPGFSAYV+MNN+GIVIKYESM YQ AVHHAALVLDLV K KKYMRE+FEPPDN+VESLRLRT EHEMI+A H+NFTLVV+Q+DP    K   + E  E EE+KK+
Sbjct:   10 QPNEVEEVIKELKKNPGFSAYVVMNNDGIVIKYESMSYQTAVHHAALVLDLVAKGKKYMREMFEPPDNEVESLRLRTEEHEMIVAQHENFTLVVIQEDP----KWKLKREAQEAEEEKKE 125          
BLAST of mRNA_H-elongata_contig71345.14795.1 vs. uniprot
Match: A0A7S2XUU9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUU9_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.280e-48
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    1 SQQVNEVEEVIKELKTNPGFSAYVIMNNEGIVIKYESMEYQAAVHHAALVLDLVRKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHDNFTLVVVQQDPGANKKVAREEEGVE 345
            SQQ NEVEEVI+ELK NPGF AYVIMNN+GIVIKYE+MEY+ AVHHA LVLDL  KSKKY+RELFEPPDN+VESLRLRT ++EMIIA H NFTL V+Q+   + K ++++E  VE
Sbjct:    3 SQQPNEVEEVIRELKKNPGFDAYVIMNNDGIVIKYENMEYKTAVHHAHLVLDLCTKSKKYIRELFEPPDNEVESLRLRTADYEMIIAQHGNFTLTVLQK---SQKAMSKKETVVE 114          
BLAST of mRNA_H-elongata_contig71345.14795.1 vs. uniprot
Match: A0A6V1PEV3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PEV3_HETAK)

HSP 1 Score: 155 bits (392), Expect = 1.130e-46
Identity = 80/118 (67.80%), Postives = 94/118 (79.66%), Query Frame = 1
Query:    1 SQQVNEVEEVIKELKTNPGFSAYVIMNNEGIVIKYESMEYQAAVHHAALVLDLVRKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHDNFTLVVVQQDPGANKKVAREEEGVEGEE 354
            SQQ NEVEEVIKELK NPGF  YV+MNN+GIVIK E+MEY+ AVHHA LVLDL  KS+KYMR+L +PPDN+VES+RLRT ++EMIIA HDNFTLVV+Q+   A      EEE  + EE
Sbjct:    3 SQQPNEVEEVIKELKQNPGFDGYVVMNNDGIVIKCENMEYKTAVHHAHLVLDLCAKSRKYMRDLLDPPDNEVESIRLRTIDYEMIIAQHDNFTLVVIQKSHRAMNMPVEEEEDEKKEE 120          
BLAST of mRNA_H-elongata_contig71345.14795.1 vs. uniprot
Match: A0A7S1XSZ1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSZ1_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.560e-38
Identity = 72/115 (62.61%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    1 SQQVNEVEEVIKELKTNPGFSAYVIMNNEGIVIKYESMEYQAAVHHAALVLDLVRKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHDNFTLVVVQQDPGANKKVAREEEGVE 345
            SQQVNE EEVIKELK  PGF +Y+I+NN+GIVIK+E+M+Y++A+  A LVLDLV KSKKY+RELFE PDN+VESLRLR+   E+I+A H +FTLVV Q       K   EEE  E
Sbjct:    3 SQQVNEAEEVIKELKMVPGFHSYMILNNDGIVIKWENMQYRSAIQCAHLVLDLVAKSKKYIRELFEVPDNEVESLRLRSKNFELIVAQHGSFTLVVKQLSQLEMAKPPEEEEDGE 117          
BLAST of mRNA_H-elongata_contig71345.14795.1 vs. uniprot
Match: A0A7S2SQX1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQX1_9STRA)

HSP 1 Score: 132 bits (331), Expect = 2.150e-37
Identity = 73/122 (59.84%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    1 SQQVNEVEEVIKELKTNPGFSAYVIMNNEGIVIKYESMEYQAAVHHAALVLDLVRKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHDNFTLVVVQQDPGANKKVAREEEGVEGEEDKKD 366
            S Q NEV+EVI+ELK N GF +YVI+ N+GIVIKYE+M+ Q AV  A LVLDL  KSKKY++ELFEPPDNDVESLRL+T E EMI+A + +++LVVVQ      ++    +   EGEE+KKD
Sbjct:    3 SNQTNEVDEVIRELKQNQGFKSYVIIRNDGIVIKYENMDVQKAVQTAHLVLDLCAKSKKYIKELFEPPDNDVESLRLKTLEFEMIVAQYGDYSLVVVQD----TEQHEDADAPGEGEEEKKD 120          
BLAST of mRNA_H-elongata_contig71345.14795.1 vs. uniprot
Match: A0A6S8XD14_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XD14_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.770e-34
Identity = 64/116 (55.17%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 SQQVNEVEEVIKELKTNPGFSAYVIMNNEGIVIKYES----MEYQAAVHHAALVLDLVRKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHDNFTLVVVQQDPGANKKVAREEE 336
            SQQ+NEVEE++KEL+ NPGF AY+I+NN+GIVIK++     M YQ AV ++  VLDL  KSK ++++LFEP DN VE++RLRT E+E+I A   NFTLVV+Q+D    K   + EE
Sbjct:    3 SQQINEVEEMLKELRKNPGFKAYLILNNDGIVIKWDQEGSPMPYQKAVQYSHHVLDLCNKSKAHIKDLFEPQDNQVENIRLRTDEYELIAAQQANFTLVVIQEDETKAKTKEKREE 118          
BLAST of mRNA_H-elongata_contig71345.14795.1 vs. uniprot
Match: A0A7S2C4Y6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C4Y6_9STRA)

HSP 1 Score: 120 bits (302), Expect = 5.500e-33
Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    7 QVNEVEEVIKELKTNPGFSAYVIMNNEGIVIKYESMEYQAAVHHAALVLDLVRKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHDNFTLVVVQQ---DPGANKKVARE 330
            Q N+V+EVI +LK+N G   YVI+NN+GIVIKYE M+Y  AV HA LVLDL  KSK Y R +FE P+N+VES+RL+T E EMII+   NFTLV++Q     P  +++VA E
Sbjct:    5 QPNQVDEVIHDLKSNVGAKQYVILNNDGIVIKYEGMDYSRAVQHAYLVLDLCAKSKSYFRGMFEAPENEVESIRLKTNEFEMIISQIQNFTLVMIQDTRPQPEEDEEVAAE 115          
BLAST of mRNA_H-elongata_contig71345.14795.1 vs. uniprot
Match: H3H541_PHYRM (Robl_LC7 domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=H3H541_PHYRM)

HSP 1 Score: 118 bits (295), Expect = 9.580e-32
Identity = 57/96 (59.38%), Postives = 80/96 (83.33%), Query Frame = 1
Query:   13 NEVEEVIKELKTNPGFSAYVIMNNEGIVIKYESMEYQAAVHHAALVLDLVRKSKKYMRELF-EPPDNDVESLRLRTGEHEMIIALHDNFTLVVVQQ 297
            NE+EEVIK+LK+ PGFS+Y++MNN+GIV+KYE++EY+ A+ HA  VL L  ++KK++++LF +P D+++E LRLRT  HEMIIA H  FTLVV+QQ
Sbjct:    7 NEIEEVIKQLKSKPGFSSYILMNNDGIVVKYENVEYKEAIMHAYHVLSLYGRTKKHLQKLFPDPSDSEIEWLRLRTKMHEMIIAQHLRFTLVVLQQ 102          
BLAST of mRNA_H-elongata_contig71345.14795.1 vs. uniprot
Match: T0S3Y7_SAPDV (Robl_LC7 domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0S3Y7_SAPDV)

HSP 1 Score: 117 bits (293), Expect = 1.530e-31
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   13 NEVEEVIKELKTNPGFSAYVIMNNEGIVIKYESMEYQAAVHHAALVLDLVRKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHDNFTLVVVQQDPGANKKV 321
            NEVEE IK LK  PGF +Y++MNN+GIVIKYE+MEY+ AV HA  +L+L  +SKKY+ +LF+  ++D+E LRLRT  HEMIIA +  FTLVV+Q       KV
Sbjct:    7 NEVEETIKALKAKPGFFSYIVMNNDGIVIKYENMEYKMAVMHAYHILNLYARSKKYLTKLFDAAESDIECLRLRTKLHEMIIAQYAKFTLVVLQVSETEEVKV 109          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71345.14795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQT2_ECTSI8.810e-6383.61Robl_LC7 domain-containing protein n=1 Tax=Ectocar... [more]
A0A835ZE71_9STRA3.210e-5475.00Robl_LC7 domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2XUU9_9STRA3.280e-4871.30Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1PEV3_HETAK1.130e-4667.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1XSZ1_9STRA2.560e-3862.61Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SQX1_9STRA2.150e-3759.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6S8XD14_9STRA1.770e-3455.17Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2C4Y6_9STRA5.500e-3356.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
H3H541_PHYRM9.580e-3259.38Robl_LC7 domain-containing protein n=19 Tax=Phytop... [more]
T0S3Y7_SAPDV1.530e-3157.28Robl_LC7 domain-containing protein n=4 Tax=Saprole... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71345contigH-elongata_contig71345:629..2165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue5.8e-48
Seed eggNOG ortholog2880.D8LQT2
KEGG koko:K10419
EggNOG free text desc.dynein intermediate chain binding
EggNOG OGsKOG4115@1,KOG4115@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDynein light chain-related
Ec32 orthologEc-24_002180.1
Exons4
Model size369
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71345.14795.1prot_H-elongata_contig71345.14795.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71345 629..2165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931113.4415944-CDS-H-elongata_contig71345:628..7161622931113.4415944-CDS-H-elongata_contig71345:628..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71345 629..716 +
1691679703.577402-CDS-H-elongata_contig71345:628..7161691679703.577402-CDS-H-elongata_contig71345:628..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71345 629..716 +
1622931113.462276-CDS-H-elongata_contig71345:1390..15091622931113.462276-CDS-H-elongata_contig71345:1390..1509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71345 1391..1509 +
1691679703.589113-CDS-H-elongata_contig71345:1390..15091691679703.589113-CDS-H-elongata_contig71345:1390..1509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71345 1391..1509 +
1622931113.474665-CDS-H-elongata_contig71345:1646..17361622931113.474665-CDS-H-elongata_contig71345:1646..1736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71345 1647..1736 +
1691679703.5995677-CDS-H-elongata_contig71345:1646..17361691679703.5995677-CDS-H-elongata_contig71345:1646..1736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71345 1647..1736 +
1622931113.4883819-CDS-H-elongata_contig71345:2093..21651622931113.4883819-CDS-H-elongata_contig71345:2093..2165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71345 2094..2165 +
1691679703.6072607-CDS-H-elongata_contig71345:2093..21651691679703.6072607-CDS-H-elongata_contig71345:2093..2165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71345 2094..2165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71345.14795.1

>prot_H-elongata_contig71345.14795.1 ID=prot_H-elongata_contig71345.14795.1|Name=mRNA_H-elongata_contig71345.14795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
SQQVNEVEEVIKELKTNPGFSAYVIMNNEGIVIKYESMEYQAAVHHAALV
LDLVRKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHDNFTLVVVQQD
PGANKKVAREEEGVEGEEDKKD*
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mRNA from alignment at H-elongata_contig71345:629..2165+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71345.14795.1 ID=mRNA_H-elongata_contig71345.14795.1|Name=mRNA_H-elongata_contig71345.14795.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1537bp|location=Sequence derived from alignment at H-elongata_contig71345:629..2165+ (Himanthalia elongata Himel1 dioecious)
TCCCAACAGGTGAACGAAGTCGAGGAGGTAATCAAAGAGCTCAAAACAAA TCCGGGGTTCTCGGCGTACGTCATCATGAACAACGAAGGTGAGCGAAAAT TGACTCCTCATGGTATGACATAACAGATCGGAACAAGGTGTGCGTGGGAG GAAGAAGACCTGCTCTGTATATTGGTGATGCGAGGACTCGGAATTAACAA AAAAAACTGAGTATGTTTGGGCGATTTTGGAACCGAGGACTACCGATTGA GACCTTTCATGGTCGAACATATATGACCGGCATAAAGTTGTGGGCAACGA GAAGAAAACAAAATCGATATCGCATACGTCATTGTCAAGTTAGAGGGTAA TTACCACAACTTCTAGGGGCGTGGTTCCAGGATCTTGAATGCCTGAAAGG TTTCACCTTGTTAATTTCCGCGAACATAAGAAGAGTTGTTCGAATTTGAT GCCATCATAATAAAAATGACCACGCTCTGAAGGCGGTCATATACGTTCCA TAAAAGGTCCCAATAGGTAGTCTTCGGTTCCAAAATCGCTCAAACATACT CAGTTTTCTTGTTAATTCCGAGTTCTCGCATCACCAATATACTGTTACCA GTGGAAAATAAGAAGCACCCAAAAATAGCGCATATCATTTTTTCAGCGCA TAAACTGACACATCTATCGCGCCAAACTTGCCTTTTTTTTGCTGCAAAGG GATTACGTTTTTTTGTCCTCTCGCCATTATTTTTTCCTTGTGTTGGCCAC TGCTACAAATAGGGATAGTGATCAAGTACGAGAGCATGGAATACCAAGCA GCTGTGCACCACGCGGCTTTGGTTCTTGACCTTGTCAGAAAATCGAAGAA GTACATGCGGGAGCTTTTTGAACCGCCAGACGTGAGTCTTGGCCCGATAG ACACCGATGATCCCCTACAGGCTTAGGGGAAATCGCTAAGCTTCAGAGAG CGAAGAACGCTCTTCTTTCCATGCGGTAGCTTCTGACCCTATAAACCTTA CTCCTTCGTTCTGTGCAGAATGACGTCGAGTCCCTGAGGCTACGAACGGG GGAACACGAGATGATCATTGCTCTGCACGATAACTTCACCCTTGTGGTAG TGCAGCAGGTCAGCCGACGTGTTCCCACGGACAATAGATCTCGCGAGTCT CGTCCGACCCGACCCGTCGCGACTCACTGCCGCACGATAAAGGCCGTCGT TGTTATGAAGCCGAAACAGTCATCATATCGATGTGAGATGCTTACGTATC GTGGAGGGGCTGGATAGTAGTTGGCAGCACTTGGGCATGCCGCGGCTTGT GCGCAAGATCTACAGGGCGTCCTCGGTCGCGTCATCAATGTTTTTTTACC CAGCTCTCGCTTCTCGGACGTTTTGCACGTAAATTTCGTTTCGGTGTTAC GCGATGAGCTCTTCGAACCCTTCACTCTTACCCCCGCCCATCCCCTGCCC ACGTTATCTCCGAAGGATCCGGGCGCTAACAAGAAGGTAGCGCGCGAGGA GGAGGGCGTAGAAGGGGAAGAAGATAAGAAAGACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig71345:629..2165+

>mRNA_H-elongata_contig71345.14795.1 ID=mRNA_H-elongata_contig71345.14795.1|Name=mRNA_H-elongata_contig71345.14795.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig71345:629..2165+ (Himanthalia elongata Himel1 dioecious)
TCCCAACAGGTGAACGAAGTCGAGGAGGTAATCAAAGAGCTCAAAACAAA
TCCGGGGTTCTCGGCGTACGTCATCATGAACAACGAAGTCCCAACAGGTG
AACGAAGTCGAGGAGGTAATCAAAGAGCTCAAAACAAATCCGGGGTTCTC
GGCGTACGTCATCATGAACAACGAAGGGATAGTGATCAAGTACGAGAGCA
TGGAATACCAAGCAGCTGTGCACCACGCGGCTTTGGTTCTTGACCTTGTC
AGAAAATCGAAGAAGTACATGCGGGAGCTTTTTGAACCGCCAGACGGATA
GTGATCAAGTACGAGAGCATGGAATACCAAGCAGCTGTGCACCACGCGGC
TTTGGTTCTTGACCTTGTCAGAAAATCGAAGAAGTACATGCGGGAGCTTT
TTGAACCGCCAGACAATGACGTCGAGTCCCTGAGGCTACGAACGGGGGAA
CACGAGATGATCATTGCTCTGCACGATAACTTCACCCTTGTGGTAGTGCA
GCAGAATGACGTCGAGTCCCTGAGGCTACGAACGGGGGAACACGAGATGA
TCATTGCTCTGCACGATAACTTCACCCTTGTGGTAGTGCAGCAGGATCCG
GGCGCTAACAAGAAGGTAGCGCGCGAGGAGGAGGGCGTAGAAGGGGAAGA
AGATAAGAAAGACTGAGATCCGGGCGCTAACAAGAAGGTAGCGCGCGAGG
AGGAGGGCGTAGAAGGGGAAGAAGATAAGAAAGACTGA
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