mRNA_H-elongata_contig69838.14631.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI) HSP 1 Score: 140 bits (354), Expect = 4.880e-37 Identity = 64/83 (77.11%), Postives = 76/83 (91.57%), Query Frame = 3
Query: 3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
EIA+DLE H+FR+F GVVCL+Q+STR++DYIVDP+KLR EM RLL VF+DP IVKV HGSD+D+LWLQRDLGLY+VNMFDTGQ
Sbjct: 335 EIAVDLEHHSFRTFLGVVCLMQLSTREQDYIVDPLKLRGEMGRLLPVFSDPNIVKVFHGSDSDVLWLQRDLGLYLVNMFDTGQ 417
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: F6R4R6_CIOIN (HRDC domain-containing protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6R4R6_CIOIN) HSP 1 Score: 126 bits (316), Expect = 7.980e-34 Identity = 55/83 (66.27%), Postives = 71/83 (85.54%), Query Frame = 3
Query: 3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
EIA+DLEAH++RS+QG+ CL+Q+STR +DYIVD I LRAE+ L VF +P I+KV HG+D+DI+WLQRD G+YVVN+FDTGQ
Sbjct: 9 EIAVDLEAHSYRSYQGITCLMQLSTRTKDYIVDTIALRAELNILNQVFANPNIIKVFHGADSDIIWLQRDFGIYVVNLFDTGQ 91
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: UPI0006B0C215 (LOW QUALITY PROTEIN: exosome component 10-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0C215) HSP 1 Score: 131 bits (330), Expect = 8.350e-34 Identity = 59/83 (71.08%), Postives = 73/83 (87.95%), Query Frame = 3
Query: 3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
EIA+DLE H++RSFQG CL+Q+STR++DYI+D I+LR+E+ +L +FTDP IVKVLHG+D DILWLQRD GLYVVNMFDTGQ
Sbjct: 297 EIAVDLEHHSYRSFQGFTCLIQLSTREKDYIIDAIELRSELFQLNEIFTDPKIVKVLHGADMDILWLQRDFGLYVVNMFDTGQ 379
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: UPI001B889F7B (exosome component 10-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889F7B) HSP 1 Score: 130 bits (326), Expect = 2.900e-33 Identity = 57/83 (68.67%), Postives = 74/83 (89.16%), Query Frame = 3
Query: 3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
EIAIDLEAH++R+FQG+ CL+QISTR++DYI+D + LR+++ L VFTDP IVKVLHG+D+DI+WLQRD G+Y+VNMFDTGQ
Sbjct: 287 EIAIDLEAHSYRTFQGITCLMQISTREQDYIIDTLTLRSDICMLNDVFTDPNIVKVLHGADSDIVWLQRDFGVYIVNMFDTGQ 369
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: UPI0016524A0A (exosome component 10 isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI0016524A0A) HSP 1 Score: 129 bits (325), Expect = 3.970e-33 Identity = 59/83 (71.08%), Postives = 71/83 (85.54%), Query Frame = 3
Query: 3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
E A+DLEAHT+RSFQG+ CL+QISTR DYIVD ++LR+EM +L VF DP+I KVLHG+D DI+WLQRD G+YVVNMFDTGQ
Sbjct: 302 EFAVDLEAHTYRSFQGLTCLMQISTRSHDYIVDVLELRSEMYKLNEVFADPSITKVLHGADMDIVWLQRDFGVYVVNMFDTGQ 384
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: A0A7S3IVH4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3IVH4_9SPIT) HSP 1 Score: 121 bits (304), Expect = 4.090e-33 Identity = 58/84 (69.05%), Postives = 70/84 (83.33%), Query Frame = 3
Query: 3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMR-RLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
EIAIDLEAHT RS+ G+ CL+QISTR+RD+IVD +KLR+++ LL +F DP VKVLHG+D DI WLQRD GLY+VNMFDTGQ
Sbjct: 78 EIAIDLEAHTMRSYNGLTCLMQISTRERDFIVDTLKLRSKLGPALLHIFDDPDKVKVLHGADMDIQWLQRDFGLYIVNMFDTGQ 161
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: A0A7S3TXA6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TXA6_9SPIT) HSP 1 Score: 121 bits (304), Expect = 4.090e-33 Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 3
Query: 3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
EIA+DLE H FRS++G VCL+Q+STR +D+IVDP + +M L VF DP IVKVLHGSD DILWLQRD +YVVNMFDTGQ
Sbjct: 53 EIAVDLEHHDFRSYRGFVCLLQLSTRQKDFIVDPFDIFEQMHMLNEVFADPRIVKVLHGSDRDILWLQRDFSVYVVNMFDTGQ 135
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: L1IRS2_GUITC (3'-5' exonuclease domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IRS2_GUITC) HSP 1 Score: 120 bits (300), Expect = 5.860e-33 Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 3
Query: 3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
E A+DLE H+ RSFQG CL+QISTR++D+IVD I+LR+ + LL FTDP I KV HG+D+D+ WLQRD GLY+VNMFDTGQ
Sbjct: 10 EFAVDLEHHSLRSFQGFTCLMQISTREQDFIVDTIELRSCIHLLLPAFTDPKITKVFHGADSDVRWLQRDFGLYIVNMFDTGQ 92
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: H2ZCV9_CIOSA (HRDC domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZCV9_CIOSA) HSP 1 Score: 127 bits (320), Expect = 1.100e-32 Identity = 55/82 (67.07%), Postives = 72/82 (87.80%), Query Frame = 3
Query: 6 IAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
IA+DLEAH++RSFQG+ CL+Q+STR++DYI+D + LR+E+ L VFTDP IVKV HG+D+DI+WLQRD G+YVVN+FDTGQ
Sbjct: 278 IAVDLEAHSYRSFQGITCLMQLSTREKDYIIDTLALRSELNILNEVFTDPRIVKVFHGADSDIVWLQRDFGIYVVNLFDTGQ 359
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: A0A151ZD76_9MYCE (3'-5' exonuclease n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZD76_9MYCE) HSP 1 Score: 127 bits (320), Expect = 1.880e-32 Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 3
Query: 3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
EIAIDLE H++RS+QG VCL+Q+STR D+I+D + LR++M RL VFTDP IVKVLHGSD+DI WLQRD G+Y+VNMFDTGQ
Sbjct: 273 EIAIDLENHSYRSYQGFVCLMQVSTRTEDFIIDTLVLRSQMNRLNVVFTDPKIVKVLHGSDSDIKWLQRDFGVYIVNMFDTGQ 355 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69838.14631.1 >prot_H-elongata_contig69838.14631.1 ID=prot_H-elongata_contig69838.14631.1|Name=mRNA_H-elongata_contig69838.14631.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp GRSLSTWKPTLSGASREWCAWCRFRPGIETTSWTRSSSGRR*back to top mRNA from alignment at H-elongata_contig69838:1237..2645- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69838.14631.1 ID=mRNA_H-elongata_contig69838.14631.1|Name=mRNA_H-elongata_contig69838.14631.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1409bp|location=Sequence derived from alignment at H-elongata_contig69838:1237..2645- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69838:1237..2645- >mRNA_H-elongata_contig69838.14631.1 ID=mRNA_H-elongata_contig69838.14631.1|Name=mRNA_H-elongata_contig69838.14631.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig69838:1237..2645- (Himanthalia elongata Himel1 dioecious)back to top |