mRNA_H-elongata_contig69838.14631.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69838.14631.1
Unique NamemRNA_H-elongata_contig69838.14631.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 4.880e-37
Identity = 64/83 (77.11%), Postives = 76/83 (91.57%), Query Frame = 3
Query:    3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
            EIA+DLE H+FR+F GVVCL+Q+STR++DYIVDP+KLR EM RLL VF+DP IVKV HGSD+D+LWLQRDLGLY+VNMFDTGQ
Sbjct:  335 EIAVDLEHHSFRTFLGVVCLMQLSTREQDYIVDPLKLRGEMGRLLPVFSDPNIVKVFHGSDSDVLWLQRDLGLYLVNMFDTGQ 417          
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: F6R4R6_CIOIN (HRDC domain-containing protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6R4R6_CIOIN)

HSP 1 Score: 126 bits (316), Expect = 7.980e-34
Identity = 55/83 (66.27%), Postives = 71/83 (85.54%), Query Frame = 3
Query:    3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
            EIA+DLEAH++RS+QG+ CL+Q+STR +DYIVD I LRAE+  L  VF +P I+KV HG+D+DI+WLQRD G+YVVN+FDTGQ
Sbjct:    9 EIAVDLEAHSYRSYQGITCLMQLSTRTKDYIVDTIALRAELNILNQVFANPNIIKVFHGADSDIIWLQRDFGIYVVNLFDTGQ 91          
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: UPI0006B0C215 (LOW QUALITY PROTEIN: exosome component 10-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0C215)

HSP 1 Score: 131 bits (330), Expect = 8.350e-34
Identity = 59/83 (71.08%), Postives = 73/83 (87.95%), Query Frame = 3
Query:    3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
            EIA+DLE H++RSFQG  CL+Q+STR++DYI+D I+LR+E+ +L  +FTDP IVKVLHG+D DILWLQRD GLYVVNMFDTGQ
Sbjct:  297 EIAVDLEHHSYRSFQGFTCLIQLSTREKDYIIDAIELRSELFQLNEIFTDPKIVKVLHGADMDILWLQRDFGLYVVNMFDTGQ 379          
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: UPI001B889F7B (exosome component 10-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889F7B)

HSP 1 Score: 130 bits (326), Expect = 2.900e-33
Identity = 57/83 (68.67%), Postives = 74/83 (89.16%), Query Frame = 3
Query:    3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
            EIAIDLEAH++R+FQG+ CL+QISTR++DYI+D + LR+++  L  VFTDP IVKVLHG+D+DI+WLQRD G+Y+VNMFDTGQ
Sbjct:  287 EIAIDLEAHSYRTFQGITCLMQISTREQDYIIDTLTLRSDICMLNDVFTDPNIVKVLHGADSDIVWLQRDFGVYIVNMFDTGQ 369          
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: UPI0016524A0A (exosome component 10 isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI0016524A0A)

HSP 1 Score: 129 bits (325), Expect = 3.970e-33
Identity = 59/83 (71.08%), Postives = 71/83 (85.54%), Query Frame = 3
Query:    3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
            E A+DLEAHT+RSFQG+ CL+QISTR  DYIVD ++LR+EM +L  VF DP+I KVLHG+D DI+WLQRD G+YVVNMFDTGQ
Sbjct:  302 EFAVDLEAHTYRSFQGLTCLMQISTRSHDYIVDVLELRSEMYKLNEVFADPSITKVLHGADMDIVWLQRDFGVYVVNMFDTGQ 384          
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: A0A7S3IVH4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3IVH4_9SPIT)

HSP 1 Score: 121 bits (304), Expect = 4.090e-33
Identity = 58/84 (69.05%), Postives = 70/84 (83.33%), Query Frame = 3
Query:    3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMR-RLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
            EIAIDLEAHT RS+ G+ CL+QISTR+RD+IVD +KLR+++   LL +F DP  VKVLHG+D DI WLQRD GLY+VNMFDTGQ
Sbjct:   78 EIAIDLEAHTMRSYNGLTCLMQISTRERDFIVDTLKLRSKLGPALLHIFDDPDKVKVLHGADMDIQWLQRDFGLYIVNMFDTGQ 161          
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: A0A7S3TXA6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TXA6_9SPIT)

HSP 1 Score: 121 bits (304), Expect = 4.090e-33
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 3
Query:    3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
            EIA+DLE H FRS++G VCL+Q+STR +D+IVDP  +  +M  L  VF DP IVKVLHGSD DILWLQRD  +YVVNMFDTGQ
Sbjct:   53 EIAVDLEHHDFRSYRGFVCLLQLSTRQKDFIVDPFDIFEQMHMLNEVFADPRIVKVLHGSDRDILWLQRDFSVYVVNMFDTGQ 135          
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: L1IRS2_GUITC (3'-5' exonuclease domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IRS2_GUITC)

HSP 1 Score: 120 bits (300), Expect = 5.860e-33
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 3
Query:    3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
            E A+DLE H+ RSFQG  CL+QISTR++D+IVD I+LR+ +  LL  FTDP I KV HG+D+D+ WLQRD GLY+VNMFDTGQ
Sbjct:   10 EFAVDLEHHSLRSFQGFTCLMQISTREQDFIVDTIELRSCIHLLLPAFTDPKITKVFHGADSDVRWLQRDFGLYIVNMFDTGQ 92          
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: H2ZCV9_CIOSA (HRDC domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZCV9_CIOSA)

HSP 1 Score: 127 bits (320), Expect = 1.100e-32
Identity = 55/82 (67.07%), Postives = 72/82 (87.80%), Query Frame = 3
Query:    6 IAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
            IA+DLEAH++RSFQG+ CL+Q+STR++DYI+D + LR+E+  L  VFTDP IVKV HG+D+DI+WLQRD G+YVVN+FDTGQ
Sbjct:  278 IAVDLEAHSYRSFQGITCLMQLSTREKDYIIDTLALRSELNILNEVFTDPRIVKVFHGADSDIVWLQRDFGIYVVNLFDTGQ 359          
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Match: A0A151ZD76_9MYCE (3'-5' exonuclease n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZD76_9MYCE)

HSP 1 Score: 127 bits (320), Expect = 1.880e-32
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 3
Query:    3 EIAIDLEAHTFRSFQGVVCLVQISTRDRDYIVDPIKLRAEMRRLLGVFTDPTIVKVLHGSDNDILWLQRDLGLYVVNMFDTGQ 251
            EIAIDLE H++RS+QG VCL+Q+STR  D+I+D + LR++M RL  VFTDP IVKVLHGSD+DI WLQRD G+Y+VNMFDTGQ
Sbjct:  273 EIAIDLENHSYRSYQGFVCLMQVSTRTEDFIIDTLVLRSQMNRLNVVFTDPKIVKVLHGSDSDIKWLQRDFGVYIVNMFDTGQ 355          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69838.14631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE8_ECTSI4.880e-3777.11HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
F6R4R6_CIOIN7.980e-3466.27HRDC domain-containing protein n=2 Tax=Ciona intes... [more]
UPI0006B0C2158.350e-3471.08LOW QUALITY PROTEIN: exosome component 10-like n=1... [more]
UPI001B889F7B2.900e-3368.67exosome component 10-like n=1 Tax=Gigantopelta aeg... [more]
UPI0016524A0A3.970e-3371.08exosome component 10 isoform X1 n=2 Tax=Aplysia ca... [more]
A0A7S3IVH4_9SPIT4.090e-3369.05Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]
A0A7S3TXA6_9SPIT4.090e-3367.47Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
L1IRS2_GUITC5.860e-3365.063'-5' exonuclease domain-containing protein (Fragm... [more]
H2ZCV9_CIOSA1.100e-3267.07HRDC domain-containing protein n=1 Tax=Ciona savig... [more]
A0A151ZD76_9MYCE1.880e-3269.883'-5' exonuclease n=1 Tax=Tieghemostelium lacteum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69838contigH-elongata_contig69838:1237..2645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size252
Cds size126
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69838.14631.1prot_H-elongata_contig69838.14631.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69838 1784..2645 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931095.8061855-UTR-H-elongata_contig69838:1236..13201622931095.8061855-UTR-H-elongata_contig69838:1236..1320Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69838 1237..1320 -
1691679696.12225-UTR-H-elongata_contig69838:1236..13201691679696.12225-UTR-H-elongata_contig69838:1236..1320Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69838 1237..1320 -
1622931095.820296-UTR-H-elongata_contig69838:1742..17831622931095.820296-UTR-H-elongata_contig69838:1742..1783Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69838 1743..1783 -
1691679696.143979-UTR-H-elongata_contig69838:1742..17831691679696.143979-UTR-H-elongata_contig69838:1742..1783Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69838 1743..1783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931095.8340619-CDS-H-elongata_contig69838:1783..18721622931095.8340619-CDS-H-elongata_contig69838:1783..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69838 1784..1872 -
1691679696.159498-CDS-H-elongata_contig69838:1783..18721691679696.159498-CDS-H-elongata_contig69838:1783..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69838 1784..1872 -
1622931095.855029-CDS-H-elongata_contig69838:2608..26451622931095.855029-CDS-H-elongata_contig69838:2608..2645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69838 2609..2645 -
1691679696.1727145-CDS-H-elongata_contig69838:2608..26451691679696.1727145-CDS-H-elongata_contig69838:2608..2645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69838 2609..2645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69838.14631.1

>prot_H-elongata_contig69838.14631.1 ID=prot_H-elongata_contig69838.14631.1|Name=mRNA_H-elongata_contig69838.14631.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
GRSLSTWKPTLSGASREWCAWCRFRPGIETTSWTRSSSGRR*
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mRNA from alignment at H-elongata_contig69838:1237..2645-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69838.14631.1 ID=mRNA_H-elongata_contig69838.14631.1|Name=mRNA_H-elongata_contig69838.14631.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1409bp|location=Sequence derived from alignment at H-elongata_contig69838:1237..2645- (Himanthalia elongata Himel1 dioecious)
GGGAGATCGCTATCGACCTGGAAGCCCACACTTTCAGGTGGGTAGGGAGA TTGGGAGGGAGACGGGGCGGTCTGCGATCGATTGGGGGACGGGGAACAAC ATTCATCGTCAACGTGTTCATTTATAGCCACGCCTGTGTTGAAACTCGCT GCAGGAACTGTTCCTGCTTTTGAAGGGGCTCTTTTTTTTCTCCTTCTTTT GTTATTTTCTCGTACAGCTGCTGATTGGTCCGTTTTGGTTCGACAGCAGC AATAAGCTAACCTCGATCTCGATCTGATTTTTTCCCATGCGCACTTAAAA CTTCGGAGAAAATATTCGAAAAAGGTTAATTAAATTAGTAGGTGTATGCT TGACACGGTGGCCCCTACCTTGCGTGTGTTTATGTAGTGGCCGAGGGGCA AATATGGATGGGATATGGATGGGATAGAGTGCGATGTAATGGTATATAGT GGGATGTAATGGGATATAATGGGATGTGATTGAGATAGGACGGGAGGTGT GGAGCGTGACCCAAAGGCGCCCTTGGGGAGAAGAAAGGAGGATCTGGGGT CGGAAAGAAGGGGTAAAGAGACCGCACAGGGAGATTTCGAGGGGTAAGAC ATTTGATTTGTGGGATAGCGCCATAGCTCTACCCTCTCTGGTTCTTGAAG ATGTAACACAAGACAGACAGATAGACAGACAAGAGACAGGTAGACGGAAG TACATGCATCCAAAGAGATATGCAGACGCTTCTGTTCGGCCCCGTCTTGC CTTGCCGTCCGCCTCACCTGCAGGAGCTTCCAGGGAGTGGTGTGCCTGGT GCAGATTTCGACCAGGGATCGAGACTACATCGTGGACCCGATCAAGCTCA GGGCGGAGATGAGAAGGCTGCTGGGGGTGTTCACCGACCCGACCATCGTG AAGGTGGCGCCAGCCACTGAGTAGACCTGTAGAACCTTTTACGATGGGTC TTTGCTTTCACGGAGAAACCTTTTCTGCGTTCCGTTTATGCAGTACTTCC GTGGCCTCTGTTTGTCTCCGTCTGGTTGGGGTTGTGCGGAAGAGAGGGAA CTGGAGACCTTTGCGGGGGTTTTGAGTATTGTGTATATGTGTGTGAGTGT GAGTGTGAGTATAATATTAAATTACGCATAATCGCATGTTTCCCACATGG GGGTTACGTGTGTGTGTGTATAAACCCATATATATTAGAACACGCCAGTA TCTTGCGGGCCGGAGAAAAAACGCCTCATTATAACTAAATAGACTGATAT ATATATATAGCTAATGTGAGGAATCAATTCAAAATGAATCATAAACATAC ATGTATATGTCACTACGGTTTTCAGGTTTTGCACGGTTCGGACAACGACA TCCTGTGGCTGCAGCGGGACCTGGGTCTGTACGTGGTGAACATGTTCGAC ACCGGCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig69838:1237..2645-

>mRNA_H-elongata_contig69838.14631.1 ID=mRNA_H-elongata_contig69838.14631.1|Name=mRNA_H-elongata_contig69838.14631.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig69838:1237..2645- (Himanthalia elongata Himel1 dioecious)
GGGAGATCGCTATCGACCTGGAAGCCCACACTTTCAGGGGAGATCGCTAT
CGACCTGGAAGCCCACACTTTCAGGAGCTTCCAGGGAGTGGTGTGCCTGG
TGCAGATTTCGACCAGGGATCGAGACTACATCGTGGACCCGATCAAGCTC
AGGGCGGAGATGAGAGCTTCCAGGGAGTGGTGTGCCTGGTGCAGATTTCG
ACCAGGGATCGAGACTACATCGTGGACCCGATCAAGCTCAGGGCGGAGAT
GA
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