mRNA_H-elongata_contig69639.14613.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69639.14613.1
Unique NamemRNA_H-elongata_contig69639.14613.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69639.14613.1 vs. uniprot
Match: A0A1J3ENA7_NOCCA (Histone H4 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ENA7_NOCCA)

HSP 1 Score: 203 bits (517), Expect = 1.800e-65
Identity = 106/129 (82.17%), Postives = 112/129 (86.82%), Query Frame = 1 
Query:    1 LNQQMIDSILSHNYFSSELFSTLPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 387
            LNQ    +++  +  S       P  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 LNQSQSKTLIKPSNLSFSRKFKFPEKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 130
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BLAST of mRNA_H-elongata_contig69639.14613.1 vs. uniprot
Match: A0A2J6LJW1_LACSA (Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6LJW1_LACSA)

HSP 1 Score: 204 bits (518), Expect = 1.940e-65
Identity = 104/118 (88.14%), Postives = 109/118 (92.37%), Query Frame = 1 
Query:   34 HNYFSSELFSTLPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 387
            H++F    F +    MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 HHHFHLHFFESTKFQMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 143
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BLAST of mRNA_H-elongata_contig69639.14613.1 vs. uniprot
Match: UPI001C056972 (histone H4-like n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C056972)

HSP 1 Score: 203 bits (516), Expect = 3.550e-65
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 1 
Query:   61 STLPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 387
            S L RNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   32 SFLNRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 140
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BLAST of mRNA_H-elongata_contig69639.14613.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 202 bits (514), Expect = 4.390e-65
Identity = 107/120 (89.17%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:   28 LSHNYFSSELFSTLPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 387
            ++H + SS   ++   NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    9 MAHKFVSSNKPTS---NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_H-elongata_contig69639.14613.1 vs. uniprot
Match: UPI0008738E0C (histone H4-like n=1 Tax=Lates calcarifer TaxID=8187 RepID=UPI0008738E0C)

HSP 1 Score: 202 bits (514), Expect = 5.520e-65
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 1 
Query:   43 FSSELFSTLPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 387
            FS ++  + P  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   18 FSCDISFSDPNKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 132
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BLAST of mRNA_H-elongata_contig69639.14613.1 vs. uniprot
Match: UPI0013020A52 (uncharacterized protein LOC100916825 n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=UPI0013020A52)

HSP 1 Score: 204 bits (520), Expect = 1.280e-64
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:   64 TLPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 387
            TLP NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:  116 TLPVNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 223
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BLAST of mRNA_H-elongata_contig69639.14613.1 vs. uniprot
Match: A0A6J1VXA0_9SAUR (Histone H4 n=1 Tax=Notechis scutatus TaxID=8663 RepID=A0A6J1VXA0_9SAUR)

HSP 1 Score: 201 bits (511), Expect = 1.480e-64
Identity = 104/116 (89.66%), Postives = 111/116 (95.69%), Query Frame = 1 
Query:   40 YFSSELFSTLPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 387
            + +SE+   + R+MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   15 FAASEVGWYVKRSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 130
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BLAST of mRNA_H-elongata_contig69639.14613.1 vs. uniprot
Match: A0A453MXZ5_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MXZ5_AEGTS)

HSP 1 Score: 201 bits (510), Expect = 2.100e-64
Identity = 106/122 (86.89%), Postives = 110/122 (90.16%), Query Frame = 1 
Query:   22 SILSHNYFSSELFSTLPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 387
            SI S+    S   +  P  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    9 SIRSNLLARSSKEAVSPSTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 130
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BLAST of mRNA_H-elongata_contig69639.14613.1 vs. uniprot
Match: W7TR01_9STRA (Histone H4 n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR01_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.540e-64
Identity = 109/126 (86.51%), Postives = 114/126 (90.48%), Query Frame = 1 
Query:   16 IDSILSHNYFSSELFSTLPRN--MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 387
            I  I+ ++Y  S   ST P +  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:    3 ISFIVLYSYLGS---STHPNSQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
[Close]
BLAST of mRNA_H-elongata_contig69639.14613.1 vs. uniprot
Match: A0A6G1SJU5_9ACAR (Histone H4 (Fragment) n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SJU5_9ACAR)

HSP 1 Score: 201 bits (510), Expect = 2.730e-64
Identity = 106/122 (86.89%), Postives = 112/122 (91.80%), Query Frame = 1 
Query:   34 HNYFSSELFSTLPR----NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 387
            H+Y+  +L + L      NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   17 HSYYYLQLRTPLQLQNKFNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69639.14613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J3ENA7_NOCCA1.800e-6582.17Histone H4 (Fragment) n=2 Tax=Noccaea caerulescens... [more]
A0A2J6LJW1_LACSA1.940e-6588.14Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID... [more]
UPI001C0569723.550e-6596.33histone H4-like n=1 Tax=Melanotaenia boesemani Tax... [more]
A0A3L6V663_9STRA4.390e-6589.17Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
UPI0008738E0C5.520e-6590.43histone H4-like n=1 Tax=Lates calcarifer TaxID=818... [more]
UPI0013020A521.280e-6497.22uncharacterized protein LOC100916825 n=1 Tax=Sarco... [more]
A0A6J1VXA0_9SAUR1.480e-6489.66Histone H4 n=1 Tax=Notechis scutatus TaxID=8663 Re... [more]
A0A453MXZ5_AEGTS2.100e-6486.89Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
W7TR01_9STRA2.540e-6486.51Histone H4 n=4 Tax=Monodopsidaceae TaxID=425072 Re... [more]
A0A6G1SJU5_9ACAR2.730e-6486.89Histone H4 (Fragment) n=1 Tax=Aceria tosichella Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69639contigH-elongata_contig69639:1977..2366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score206.5
Seed ortholog evalue7.5e-51
Seed eggNOG ortholog31033.ENSTRUP00000039718
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045087,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050829,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051704,GO:0051707,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:0098542,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.protein heterodimerization activity
EggNOG OGs3A1HI@33154,3BQAA@33208,3D789@33213,48EQW@7711,49BSS@7742,COG2036@1,KOG1744@1,KOG1744@2759,KOG3467@2759
COG Functional cat.B
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size378
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.9984488-UTR-H-elongata_contig69639:1976..19881622931093.9984488-UTR-H-elongata_contig69639:1976..1988Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69639 1977..1988 +
1691679695.2985072-UTR-H-elongata_contig69639:1976..19881691679695.2985072-UTR-H-elongata_contig69639:1976..1988Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69639 1977..1988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.0151265-CDS-H-elongata_contig69639:1988..23661622931094.0151265-CDS-H-elongata_contig69639:1988..2366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69639 1989..2366 +
1691679695.3125658-CDS-H-elongata_contig69639:1988..23661691679695.3125658-CDS-H-elongata_contig69639:1988..2366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69639 1989..2366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69639.14613.1prot_H-elongata_contig69639.14613.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69639 1989..2366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69639.14613.1

>prot_H-elongata_contig69639.14613.1 ID=prot_H-elongata_contig69639.14613.1|Name=mRNA_H-elongata_contig69639.14613.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MIDSILSHNYFSSELFSTLPRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQ
GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHAR
RKTVTAMDVVYALKRQGRTLYGFGG*
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mRNA from alignment at H-elongata_contig69639:1977..2366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69639.14613.1 ID=mRNA_H-elongata_contig69639.14613.1|Name=mRNA_H-elongata_contig69639.14613.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at H-elongata_contig69639:1977..2366+ (Himanthalia elongata Himel1 dioecious)
CTGAATCAACAGATGATCGACTCAATACTATCTCACAACTATTTTTCATC
GGAACTATTCTCAACCCTACCACGAAACATGTCTGGACGCGGAAAAGGCG
GTAAAGGTCTGGGCAAGGGTGGCGCCAAGCGCCATCGCAAGGTGTTACGT
GACAACATCCAGGGTATCACGAAGCCCGCCATCCGCCGTTTGGCTCGCCG
CGGCGGTGTAAAGCGTATTTCTGGACTAATTTACGAGGAGACTCGGGGCG
TGCTGAAGGTGTTCCTTGAAAACGTGATCCGCGATTCAGTCACGTACACC
GAGCATGCTCGCAGGAAAACGGTGACAGCCATGGACGTTGTATACGCCCT
TAAGCGTCAAGGCCGCACCCTTTACGGTTTTGGTGGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig69639:1977..2366+

>mRNA_H-elongata_contig69639.14613.1 ID=mRNA_H-elongata_contig69639.14613.1|Name=mRNA_H-elongata_contig69639.14613.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig69639:1977..2366+ (Himanthalia elongata Himel1 dioecious)
ATGATCGACTCAATACTATCTCACAACTATTTTTCATCGGAACTATTCTC
AACCCTACCACGAAACATGTCTGGACGCGGAAAAGGCGGTAAAGGTCTGG
GCAAGGGTGGCGCCAAGCGCCATCGCAAGGTGTTACGTGACAACATCCAG
GGTATCACGAAGCCCGCCATCCGCCGTTTGGCTCGCCGCGGCGGTGTAAA
GCGTATTTCTGGACTAATTTACGAGGAGACTCGGGGCGTGCTGAAGGTGT
TCCTTGAAAACGTGATCCGCGATTCAGTCACGTACACCGAGCATGCTCGC
AGGAAAACGGTGACAGCCATGGACGTTGTATACGCCCTTAAGCGTCAAGG
CCGCACCCTTTACGGTTTTGGTGGCTAAATGATCGACTCAATACTATCTC
ACAACTATTTTTCATCGGAACTATTCTCAACCCTACCACGAAACATGTCT
GGACGCGGAAAAGGCGGTAAAGGTCTGGGCAAGGGTGGCGCCAAGCGCCA
TCGCAAGGTGTTACGTGACAACATCCAGGGTATCACGAAGCCCGCCATCC
GCCGTTTGGCTCGCCGCGGCGGTGTAAAGCGTATTTCTGGACTAATTTAC
GAGGAGACTCGGGGCGTGCTGAAGGTGTTCCTTGAAAACGTGATCCGCGA
TTCAGTCACGTACACCGAGCATGCTCGCAGGAAAACGGTGACAGCCATGG
ACGTTGTATACGCCCTTAAGCGTCAAGGCCGCACCCTTTACGGTTTTGGT
GGCTAA
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