mRNA_H-elongata_contig69568.14603.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69568.14603.1
Unique NamemRNA_H-elongata_contig69568.14603.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: D8LFY3_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY3_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 2.920e-100
Identity = 131/154 (85.06%), Postives = 138/154 (89.61%), Query Frame = 1
Query:    1 LLVRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCSNR 462
            LL  AACPNHCSGHGTCG GA C+CN GWD+APDCSLR CSKG AWADKAYATD AHSEVECSNAGICDR+TG+C CF+PFTGAACQR RCP DCSGHGTCMTIADMSRFYGPDY  PGTGGDG+GP Y NWDA STTACYCDQG+FGADCSNR
Sbjct:   22 LLANAACPNHCSGHGTCGPGAKCTCNSGWDFAPDCSLRTCSKGVAWADKAYATDIAHSEVECSNAGICDRDTGICSCFSPFTGAACQRARCPGDCSGHGTCMTIADMSRFYGPDYTQPGTGGDGIGPSYGNWDAQSTTACYCDQGHFGADCSNR 175          
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: F0YK13_AURAN (EGF-like domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK13_AURAN)

HSP 1 Score: 223 bits (567), Expect = 9.360e-72
Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 1
Query:    4 LVRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCS 456
            +  A CPN CSGHG CG+   CSC  G+DYAPDCSLR CSKG AWADKAYA D AHS  ECSNAG+C+R+TG CECF  +TG ACQR  CP DC+ +G C+T++ + + YG DYDHP  GGDG+GP Y NWD  S T+C+CD G+ G DCS
Sbjct:    8 VALAQCPNMCSGHGDCGAENVCSCFDGFDYAPDCSLRTCSKGIAWADKAYAVDLAHSMAECSNAGLCNRDTGKCECFDGYTGLACQRSACPNDCNANGMCLTLSRLGQLYGVDYDHPSVGGDGVGPSYGNWDKDSVTSCFCDPGFSGPDCS 158          
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A835ZG45_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG45_9STRA)

HSP 1 Score: 214 bits (546), Expect = 7.270e-68
Identity = 95/152 (62.50%), Postives = 107/152 (70.39%), Query Frame = 1
Query:    7 VRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCSNR 462
              A CPN CSGHGTCG   TC+CN GW  A DCSLR C  G AWADKAYATD AH++VECS AGICD ETG C+CFTP+ G+ACQR+RCP DCS HG CMT+AD+ R+YG            LG  Y NWD  STT C CD GYFG+DC+ R
Sbjct:   17 ATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYGA-----------LGSTYDNWDKDSTTMCVCDAGYFGSDCTKR 157          
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A7S2HHP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHP1_9STRA)

HSP 1 Score: 213 bits (541), Expect = 6.150e-64
Identity = 91/151 (60.26%), Postives = 104/151 (68.87%), Query Frame = 1
Query:    7 VRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCSN 459
            V A CPN CSG GTCG    C C  G++Y+ DCS R C    AWADKAYATD AH+E EC+NAG CDR TG+C+C   +TG AC R RCP DC+G G CMTI  +   YGPDY  PG+GGDG GP YSNWD  S T+C C  GYFG DCS+
Sbjct:   25 VNAQCPNSCSGRGTCGDNNVCDCFDGFEYSADCSQRTCPSAPAWADKAYATDLAHTEAECANAGFCDRSTGLCKCLPGYTGIACNRARCPNDCNGRGICMTIGTLGELYGPDYVQPGSGGDGRGPTYSNWDKSSVTSCVCHAGYFGPDCSS 175          
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A7S3ZWQ5_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWQ5_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.830e-63
Identity = 91/146 (62.33%), Postives = 110/146 (75.34%), Query Frame = 1
Query:   19 CPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCS 456
            CPN CSGHG+CG    CSC  G+DYAPDCSLR CSKG AWADKAYA D AHS  ECS+AG+C+R+TG CECF  +TG ACQR  CP DC+ +G C+T++ + + YG D+ HP TGGDG GP Y+NWD  S T+C+CD G+ G DCS
Sbjct:   21 CPNMCSGHGSCGPENVCSCFEGFDYAPDCSLRTCSKGAAWADKAYAVDLAHSPSECSSAGLCNRDTGKCECFDGYTGLACQRSTCPNDCNANGMCLTLSRLGQLYGIDHQHPSTGGDGTGPSYANWDKDSVTSCFCDPGFSGPDCS 166          
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A7S2WIH4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIH4_9STRA)

HSP 1 Score: 206 bits (525), Expect = 5.820e-63
Identity = 89/152 (58.55%), Postives = 106/152 (69.74%), Query Frame = 1
Query:   10 RAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYD-HPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCSNR 462
            +A+CPN CSGHG CG+   C+C+ GW   PDCS R+C    AWAD+AY+ D AH+  ECS AG+CDR  G C CF  +TGAACQR RCP DCSGHG C+T+  + R  G DY   PG GGDG+GPEY+NWDA   T C CD G+FG DCS R
Sbjct:   46 KASCPNQCSGHGACGNENVCTCDDGWVVMPDCSERQCPYDRAWADRAYSDDAAHTLAECSGAGLCDRAQGTCTCFDGYTGAACQRARCPNDCSGHGLCITLGALGRLEGNDYSARPGVGGDGIGPEYTNWDADHVTMCNCDWGFFGPDCSLR 197          
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A3F2RSF4_9STRA (EGF-like domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RSF4_9STRA)

HSP 1 Score: 199 bits (506), Expect = 3.740e-60
Identity = 87/151 (57.62%), Postives = 105/151 (69.54%), Query Frame = 1
Query:    4 LVRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCS 456
            +V AAC N CSGHG CG+   C+C+  W  APDCSLR+C  G AW+DKA A + AH+  ECSN G+CD   G C CF  FTGAACQR+RCP DCSGHG C + A ++  YGPD   PG GGDG+GP Y+NW+  S ++C CD GY G DCS
Sbjct:   24 VVDAACANFCSGHGRCGASNQCTCDPDWALAPDCSLRKCPTGVAWSDKAKAPNVAHANAECSNRGVCDYSKGECTCFNGFTGAACQRLRCPSDCSGHGLCYSSATLALQYGPD-SSPGVGGDGVGPVYTNWEKDSMSSCLCDMGYTGPDCS 173          
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A8K1CGE0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGE0_PYTOL)

HSP 1 Score: 208 bits (529), Expect = 2.420e-59
Identity = 89/152 (58.55%), Postives = 107/152 (70.39%), Query Frame = 1
Query:    7 VRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCSNR 462
            V A CPN CSGHGTCG+   C+C+  W  APDCSLR+C  G AW+DKA  T+ AH+  ECSN G+CD   G C CF  +TGAACQR+RCP DCSGHG C ++A ++R YGPD   PG GGDG+GP Y NW+  S + C+CD GY G DCS R
Sbjct:   13 VSATCPNFCSGHGTCGASNQCTCDTAWSAAPDCSLRKCPSGVAWSDKASTTNKAHATAECSNRGMCDYTKGECMCFNGYTGAACQRLRCPNDCSGHGLCYSLATLAREYGPD-SLPGVGGDGVGPNYQNWEKDSMSTCFCDTGYNGPDCSQR 163          
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A7S0T0J1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T0J1_9STRA)

HSP 1 Score: 204 bits (519), Expect = 1.560e-58
Identity = 93/153 (60.78%), Postives = 106/153 (69.28%), Query Frame = 1
Query:    4 LVRAACPNHCSGHGTCGSGATCSCNLGWDY-APDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGT-GGDGLGPEYSNWDAHSTTACYCDQGYFGADCS 456
            ++ +ACPN CSGHGTC  G  C C  GW+  A DCS R+C+ G AWADKAYATD AH   ECSNAGICDR TG+C+CF  FTG+ACQR  CP DCSGHG+C+TI D+S F GP YD      G G G  YS WD  S T C CD G+FG DCS
Sbjct:   27 IIESACPNSCSGHGTCAGGNICQCFTGWNGGAADCSFRQCANGTAWADKAYATDEAHQTTECSNAGICDRSTGLCKCFDGFTGSACQRSVCPNDCSGHGSCLTINDISVFEGPPYDPTSVYKGTGRGSSYSYWDKSSITMCNCDDGFFGPDCS 179          
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A421G501_9STRA (EGF-like domain-containing protein (Fragment) n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421G501_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.110e-57
Identity = 87/151 (57.62%), Postives = 105/151 (69.54%), Query Frame = 1
Query:    4 LVRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCS 456
            +V AAC N CSGHG CG+   C+C+  W  APDCSLR+C  G AW+DKA A + AH+  ECSN G+CD   G C CF  FTGAACQR+RCP DCSGHG C + A ++  YGPD   PG GGDG+GP Y+NW+  S ++C CD GY G DCS
Sbjct:   24 VVDAACANFCSGHGRCGASNQCTCDPDWALAPDCSLRKCPTGVAWSDKAKAPNVAHANAECSNRGVCDYSKGECTCFNGFTGAACQRLRCPSDCSGHGLCYSSATLALQYGPD-SSPGVGGDGVGPVYTNWEKDSMSSCLCDMGYTGPDCS 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFY3_ECTSI2.920e-10085.06EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
F0YK13_AURAN9.360e-7262.25EGF-like domain-containing protein (Fragment) n=1 ... [more]
A0A835ZG45_9STRA7.270e-6862.50EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2HHP1_9STRA6.150e-6460.26Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3ZWQ5_9STRA1.830e-6362.33Hypothetical protein n=4 Tax=Pelagomonas calceolat... [more]
A0A7S2WIH4_9STRA5.820e-6358.55Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A3F2RSF4_9STRA3.740e-6057.62EGF-like domain-containing protein n=3 Tax=Phytoph... [more]
A0A8K1CGE0_PYTOL2.420e-5958.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S0T0J1_9STRA1.560e-5860.78Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A421G501_9STRA1.110e-5757.62EGF-like domain-containing protein (Fragment) n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69568contigH-elongata_contig69568:390..3071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score305.4
Seed ortholog evalue1.5e-80
Seed eggNOG ortholog2880.D8LFY3
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
Ec32 ortholog descriptionSecreted EGF-like domain protein
Ec32 orthologEc-05_005030.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size462
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69568.14603.1prot_H-elongata_contig69568.14603.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69568 390..3071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.2132857-CDS-H-elongata_contig69568:389..5011622931093.2132857-CDS-H-elongata_contig69568:389..501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69568 390..501 +
1691679694.971379-CDS-H-elongata_contig69568:389..5011691679694.971379-CDS-H-elongata_contig69568:389..501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69568 390..501 +
1622931093.226952-CDS-H-elongata_contig69568:2189..23421622931093.226952-CDS-H-elongata_contig69568:2189..2342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69568 2190..2342 +
1691679694.9826665-CDS-H-elongata_contig69568:2189..23421691679694.9826665-CDS-H-elongata_contig69568:2189..2342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69568 2190..2342 +
1622931093.2443905-CDS-H-elongata_contig69568:2874..30711622931093.2443905-CDS-H-elongata_contig69568:2874..3071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69568 2875..3071 +
1691679694.992497-CDS-H-elongata_contig69568:2874..30711691679694.992497-CDS-H-elongata_contig69568:2874..3071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69568 2875..3071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69568.14603.1

>prot_H-elongata_contig69568.14603.1 ID=prot_H-elongata_contig69568.14603.1|Name=mRNA_H-elongata_contig69568.14603.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
LLVRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKA
YATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGT
CMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGAD
CSNR
back to top

mRNA from alignment at H-elongata_contig69568:390..3071+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69568.14603.1 ID=mRNA_H-elongata_contig69568.14603.1|Name=mRNA_H-elongata_contig69568.14603.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2682bp|location=Sequence derived from alignment at H-elongata_contig69568:390..3071+ (Himanthalia elongata Himel1 dioecious)
TTGTTAGTGCGCGCTGCGTGCCCCAATCACTGCAGTGGACATGGAACGTG CGGATCCGGGGCGACCTGCAGCTGCAACTTGGGCTGGGATTACGCTCCGG ACTGCTCTCTTCGTGAGTTGGAGGAGGACTACCAAGAGCGCCATGATATC GTGCGTACGCTCCACGGTGGCTGGTCGTCCGTATTTTCCTCGCAGCTCTG ATTCCTAGGTGTTGTGTCAGACCACCACGATATATATTTCTACCGGATTT ACGCGGTTATTTTTTCATTACTACACGGATGAGGCTGTGTTGTGGGAAGC ACGTTATGCTTCTGGCTACCGTTAATGTATCACACCATGCGCCAACCTAT ACTACAACAGTGAAGCAATAAACTAACATGAAGGAAACTAAAGTTCACGG GGCATTGCTTCTTATTTATTTTCGTCTGTTGCCCTTGCGATCCATAGTGC TGGACACCCAAGACACGAGAACTGTATTTACGCTCTCAATCTTGGAAGGC ACTGGTTGATTGTGGTCGATGACCCTCTAACGGCCGCTCTATGGATGGAT GTTGTTTTTTATTTTTCTTATTTAAATATAGTTATTACTATCATTACTTT TATTATTAATGTTTATATGCTTCCTGACCCCGTTATTAAATACCGGTATA CTTTTGATTATTATTGTTATCATTATTTACTCCTATACTTATTACTTATT CACTCATTTTTTGTTATTACTTTTTTGTAACTCACAAGTTAATTTCTCTA TCTATTTCGTTAGTTTCGTACTTTAGTTCAATCCCTTCATAAGTTAACCC TCTATGATCTGGTTTTGACGTCCTCATAGATAGGCCATATGCTCCCAGGT AGGTATTTATGTTAGGTCTGATATTAACCGACATATACGTACAATGGAAC CATATGTTGTAAGACATATATACTCGCTTAAGCTTGAAGAGTTACCCATC CCCCCCCCCCCCTCCTCTCTCTCTCTCCCTAGCCTATCCTCTATGGTTTA GTACAGAATTTGAATTGANNNNNNNNNNCCGGATAGGAGAAAAACGTTCA AGGTACTCTCCAATACAAAAGGAAAATACTATAATGGTGCACAATACAAA TACTCGGAAAAGCGACATCTCCAAAAAACAAAAACAAAAAAACACACACA AAAAAAAGAGAACACTCAGAGGTCTTAACGAACTGCATGTGGCTATCGGG ACGCGGGCAAATAACAAAGAGGGGCTGGGCGGACATTAACGCTGCGGACC AATCTGCGGTCCACCTGCTTTGTCAGAATGTAATCCAGACGTGCTTGCCC TTTGCCGCGGTTGGCGCTTTGGAATGTGTACGACAAGCCATTTTTTGGGG TGCTAAAGAAGGTGTTCAGAAGAGCGAGTTTGTGGTCTTCTGCGAAACTC AGCAGTAGTTTGCCGTTTTCGTTGAGCACGAAATATAAACCGATGAACGC ATTATTGCGGAACACAATTTCTCACGAGCTGTAATACAGTCTGAAACCAA TCGATGTATATATATTATATATATACATAATGCAAACATGTGCTTTACTG ACCTATATACTTAAGTGTGACGATTTTGTGCTCAAAGGTAATAATGTACA CATTCGAACCCGACGATAGTTGGTCTCCTGGATGGCACCTCTCACGGCGC TAAGAAGGTGTGGATTTTCGGAGGGTTGGAATTAGTTCAAGGTTTTAAAA ATAATAATGGGCGTGCATAGTCTCTGCGCAAGACAAGCTGTAGCTCTGTG CATGGTTTCCACCGATGTACGATGCAATCGATAAATCGTCTGCTTCGCAG GTGAGTGCTCGAAAGGCTACGCCTGGGCGGATAAAGCTTACGCTACCGAT ACCGCGCACAGCGAGGTGGAGTGCTCGAACGCGGGGATCTGCGACAGGGA AACTGGTGTCTGCGAATGTTTCACGCCTTTCACGGGGGCGGCGTGCCAAC GAGGTAGGCAGGGGAGAACGATGTTTTGTGTAACACGATCTTCACCTCGT GTACTCGAACCCGGAACCTTATCTCGCATAACCACATCAAAACGAAGATA GGATAATAATCCTCAATGTACAAAAGGCTTTATTCACACGCCGGGTCGTG GTCACGAGTAACTAGTCACCCTGCGCACGCTGAACAGAAGGTTGTGTTGA CCCGTGTTACAATACTTTGTACGACTAACAACACGATATAAGTTCGACCC AGAAAGATGTCTAGCGAAATGCCCCAGAGTCTACCACGAGAGACCTTTTG TTGTAGTCCCCGTGACGCAGGAGTGTGATGCTTCGCTTCACGAACGGTTA TCGTTACAACCATCATTGCTGCAGAGCATGCTAACGGGAGTGTTCCTTCA ACCAATGATCTTTCTTCTTCGAAGAAGGTTTAACTCCAAGATGGATCTAC ATTCCATTCCTTGCAAAGATCACGTGAACGCTTGAAACACACACGCGCGC GCGCACGTGCACGTGTACAACACCCGGATCCGCAGTGCGATGCCCTGAGG ACTGCTCCGGTCACGGAACGTGCATGACGATTGCGGACATGTCACGTTTC TACGGTCCTGACTATGACCACCCGGGCACGGGCGGTGATGGGTTGGGGCC GGAGTACAGCAACTGGGATGCGCACTCCACAACGGCGTGCTACTGTGATC AGGGGTACTTCGGCGCAGACTGCTCGAATCGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig69568:390..3071+

>mRNA_H-elongata_contig69568.14603.1 ID=mRNA_H-elongata_contig69568.14603.1|Name=mRNA_H-elongata_contig69568.14603.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig69568:390..3071+ (Himanthalia elongata Himel1 dioecious)
TTGTTAGTGCGCGCTGCGTGCCCCAATCACTGCAGTGGACATGGAACGTG
CGGATCCGGGGCGACCTGCAGCTGCAACTTGGGCTGGGATTACGCTCCGG
ACTGCTCTCTTCTTGTTAGTGCGCGCTGCGTGCCCCAATCACTGCAGTGG
ACATGGAACGTGCGGATCCGGGGCGACCTGCAGCTGCAACTTGGGCTGGG
ATTACGCTCCGGACTGCTCTCTTCGTGAGTGCTCGAAAGGCTACGCCTGG
GCGGATAAAGCTTACGCTACCGATACCGCGCACAGCGAGGTGGAGTGCTC
GAACGCGGGGATCTGCGACAGGGAAACTGGTGTCTGCGAATGTTTCACGC
CTTTCACGGGGGCGGCGTGCCAACGAGGTGAGTGCTCGAAAGGCTACGCC
TGGGCGGATAAAGCTTACGCTACCGATACCGCGCACAGCGAGGTGGAGTG
CTCGAACGCGGGGATCTGCGACAGGGAAACTGGTGTCTGCGAATGTTTCA
CGCCTTTCACGGGGGCGGCGTGCCAACGAGTGCGATGCCCTGAGGACTGC
TCCGGTCACGGAACGTGCATGACGATTGCGGACATGTCACGTTTCTACGG
TCCTGACTATGACCACCCGGGCACGGGCGGTGATGGGTTGGGGCCGGAGT
ACAGCAACTGGGATGCGCACTCCACAACGGCGTGCTACTGTGATCAGGGG
TACTTCGGCGCAGACTGCTCGAATCGTTGCGATGCCCTGAGGACTGCTCC
GGTCACGGAACGTGCATGACGATTGCGGACATGTCACGTTTCTACGGTCC
TGACTATGACCACCCGGGCACGGGCGGTGATGGGTTGGGGCCGGAGTACA
GCAACTGGGATGCGCACTCCACAACGGCGTGCTACTGTGATCAGGGGTAC
TTCGGCGCAGACTGCTCGAATCGT
back to top