mRNA_H-elongata_contig69568.14603.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: D8LFY3_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY3_ECTSI) HSP 1 Score: 304 bits (779), Expect = 2.920e-100 Identity = 131/154 (85.06%), Postives = 138/154 (89.61%), Query Frame = 1
Query: 1 LLVRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCSNR 462
LL AACPNHCSGHGTCG GA C+CN GWD+APDCSLR CSKG AWADKAYATD AHSEVECSNAGICDR+TG+C CF+PFTGAACQR RCP DCSGHGTCMTIADMSRFYGPDY PGTGGDG+GP Y NWDA STTACYCDQG+FGADCSNR
Sbjct: 22 LLANAACPNHCSGHGTCGPGAKCTCNSGWDFAPDCSLRTCSKGVAWADKAYATDIAHSEVECSNAGICDRDTGICSCFSPFTGAACQRARCPGDCSGHGTCMTIADMSRFYGPDYTQPGTGGDGIGPSYGNWDAQSTTACYCDQGHFGADCSNR 175
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: F0YK13_AURAN (EGF-like domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK13_AURAN) HSP 1 Score: 223 bits (567), Expect = 9.360e-72 Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 1
Query: 4 LVRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCS 456
+ A CPN CSGHG CG+ CSC G+DYAPDCSLR CSKG AWADKAYA D AHS ECSNAG+C+R+TG CECF +TG ACQR CP DC+ +G C+T++ + + YG DYDHP GGDG+GP Y NWD S T+C+CD G+ G DCS
Sbjct: 8 VALAQCPNMCSGHGDCGAENVCSCFDGFDYAPDCSLRTCSKGIAWADKAYAVDLAHSMAECSNAGLCNRDTGKCECFDGYTGLACQRSACPNDCNANGMCLTLSRLGQLYGVDYDHPSVGGDGVGPSYGNWDKDSVTSCFCDPGFSGPDCS 158
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A835ZG45_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG45_9STRA) HSP 1 Score: 214 bits (546), Expect = 7.270e-68 Identity = 95/152 (62.50%), Postives = 107/152 (70.39%), Query Frame = 1
Query: 7 VRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCSNR 462
A CPN CSGHGTCG TC+CN GW A DCSLR C G AWADKAYATD AH++VECS AGICD ETG C+CFTP+ G+ACQR+RCP DCS HG CMT+AD+ R+YG LG Y NWD STT C CD GYFG+DC+ R
Sbjct: 17 ATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYGA-----------LGSTYDNWDKDSTTMCVCDAGYFGSDCTKR 157
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A7S2HHP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHP1_9STRA) HSP 1 Score: 213 bits (541), Expect = 6.150e-64 Identity = 91/151 (60.26%), Postives = 104/151 (68.87%), Query Frame = 1
Query: 7 VRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCSN 459
V A CPN CSG GTCG C C G++Y+ DCS R C AWADKAYATD AH+E EC+NAG CDR TG+C+C +TG AC R RCP DC+G G CMTI + YGPDY PG+GGDG GP YSNWD S T+C C GYFG DCS+
Sbjct: 25 VNAQCPNSCSGRGTCGDNNVCDCFDGFEYSADCSQRTCPSAPAWADKAYATDLAHTEAECANAGFCDRSTGLCKCLPGYTGIACNRARCPNDCNGRGICMTIGTLGELYGPDYVQPGSGGDGRGPTYSNWDKSSVTSCVCHAGYFGPDCSS 175
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A7S3ZWQ5_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWQ5_9STRA) HSP 1 Score: 216 bits (549), Expect = 1.830e-63 Identity = 91/146 (62.33%), Postives = 110/146 (75.34%), Query Frame = 1
Query: 19 CPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCS 456
CPN CSGHG+CG CSC G+DYAPDCSLR CSKG AWADKAYA D AHS ECS+AG+C+R+TG CECF +TG ACQR CP DC+ +G C+T++ + + YG D+ HP TGGDG GP Y+NWD S T+C+CD G+ G DCS
Sbjct: 21 CPNMCSGHGSCGPENVCSCFEGFDYAPDCSLRTCSKGAAWADKAYAVDLAHSPSECSSAGLCNRDTGKCECFDGYTGLACQRSTCPNDCNANGMCLTLSRLGQLYGIDHQHPSTGGDGTGPSYANWDKDSVTSCFCDPGFSGPDCS 166
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A7S2WIH4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIH4_9STRA) HSP 1 Score: 206 bits (525), Expect = 5.820e-63 Identity = 89/152 (58.55%), Postives = 106/152 (69.74%), Query Frame = 1
Query: 10 RAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYD-HPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCSNR 462
+A+CPN CSGHG CG+ C+C+ GW PDCS R+C AWAD+AY+ D AH+ ECS AG+CDR G C CF +TGAACQR RCP DCSGHG C+T+ + R G DY PG GGDG+GPEY+NWDA T C CD G+FG DCS R
Sbjct: 46 KASCPNQCSGHGACGNENVCTCDDGWVVMPDCSERQCPYDRAWADRAYSDDAAHTLAECSGAGLCDRAQGTCTCFDGYTGAACQRARCPNDCSGHGLCITLGALGRLEGNDYSARPGVGGDGIGPEYTNWDADHVTMCNCDWGFFGPDCSLR 197
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A3F2RSF4_9STRA (EGF-like domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RSF4_9STRA) HSP 1 Score: 199 bits (506), Expect = 3.740e-60 Identity = 87/151 (57.62%), Postives = 105/151 (69.54%), Query Frame = 1
Query: 4 LVRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCS 456
+V AAC N CSGHG CG+ C+C+ W APDCSLR+C G AW+DKA A + AH+ ECSN G+CD G C CF FTGAACQR+RCP DCSGHG C + A ++ YGPD PG GGDG+GP Y+NW+ S ++C CD GY G DCS
Sbjct: 24 VVDAACANFCSGHGRCGASNQCTCDPDWALAPDCSLRKCPTGVAWSDKAKAPNVAHANAECSNRGVCDYSKGECTCFNGFTGAACQRLRCPSDCSGHGLCYSSATLALQYGPD-SSPGVGGDGVGPVYTNWEKDSMSSCLCDMGYTGPDCS 173
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A8K1CGE0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGE0_PYTOL) HSP 1 Score: 208 bits (529), Expect = 2.420e-59 Identity = 89/152 (58.55%), Postives = 107/152 (70.39%), Query Frame = 1
Query: 7 VRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCSNR 462
V A CPN CSGHGTCG+ C+C+ W APDCSLR+C G AW+DKA T+ AH+ ECSN G+CD G C CF +TGAACQR+RCP DCSGHG C ++A ++R YGPD PG GGDG+GP Y NW+ S + C+CD GY G DCS R
Sbjct: 13 VSATCPNFCSGHGTCGASNQCTCDTAWSAAPDCSLRKCPSGVAWSDKASTTNKAHATAECSNRGMCDYTKGECMCFNGYTGAACQRLRCPNDCSGHGLCYSLATLAREYGPD-SLPGVGGDGVGPNYQNWEKDSMSTCFCDTGYNGPDCSQR 163
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A7S0T0J1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T0J1_9STRA) HSP 1 Score: 204 bits (519), Expect = 1.560e-58 Identity = 93/153 (60.78%), Postives = 106/153 (69.28%), Query Frame = 1
Query: 4 LVRAACPNHCSGHGTCGSGATCSCNLGWDY-APDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGT-GGDGLGPEYSNWDAHSTTACYCDQGYFGADCS 456
++ +ACPN CSGHGTC G C C GW+ A DCS R+C+ G AWADKAYATD AH ECSNAGICDR TG+C+CF FTG+ACQR CP DCSGHG+C+TI D+S F GP YD G G G YS WD S T C CD G+FG DCS
Sbjct: 27 IIESACPNSCSGHGTCAGGNICQCFTGWNGGAADCSFRQCANGTAWADKAYATDEAHQTTECSNAGICDRSTGLCKCFDGFTGSACQRSVCPNDCSGHGSCLTINDISVFEGPPYDPTSVYKGTGRGSSYSYWDKSSITMCNCDDGFFGPDCS 179
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Match: A0A421G501_9STRA (EGF-like domain-containing protein (Fragment) n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421G501_9STRA) HSP 1 Score: 199 bits (506), Expect = 1.110e-57 Identity = 87/151 (57.62%), Postives = 105/151 (69.54%), Query Frame = 1
Query: 4 LVRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAYATDTAHSEVECSNAGICDRETGVCECFTPFTGAACQRVRCPEDCSGHGTCMTIADMSRFYGPDYDHPGTGGDGLGPEYSNWDAHSTTACYCDQGYFGADCS 456
+V AAC N CSGHG CG+ C+C+ W APDCSLR+C G AW+DKA A + AH+ ECSN G+CD G C CF FTGAACQR+RCP DCSGHG C + A ++ YGPD PG GGDG+GP Y+NW+ S ++C CD GY G DCS
Sbjct: 24 VVDAACANFCSGHGRCGASNQCTCDPDWALAPDCSLRKCPTGVAWSDKAKAPNVAHANAECSNRGVCDYSKGECTCFNGFTGAACQRLRCPSDCSGHGLCYSSATLALQYGPD-SSPGVGGDGVGPVYTNWEKDSMSSCLCDMGYTGPDCS 173 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69568.14603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69568.14603.1 >prot_H-elongata_contig69568.14603.1 ID=prot_H-elongata_contig69568.14603.1|Name=mRNA_H-elongata_contig69568.14603.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp LLVRAACPNHCSGHGTCGSGATCSCNLGWDYAPDCSLRECSKGYAWADKAback to top mRNA from alignment at H-elongata_contig69568:390..3071+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69568.14603.1 ID=mRNA_H-elongata_contig69568.14603.1|Name=mRNA_H-elongata_contig69568.14603.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2682bp|location=Sequence derived from alignment at H-elongata_contig69568:390..3071+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69568:390..3071+ >mRNA_H-elongata_contig69568.14603.1 ID=mRNA_H-elongata_contig69568.14603.1|Name=mRNA_H-elongata_contig69568.14603.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig69568:390..3071+ (Himanthalia elongata Himel1 dioecious)back to top |