mRNA_H-elongata_contig68920.14534.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig68920.14534.1 vs. uniprot
Match: D7G485_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G485_ECTSI) HSP 1 Score: 209 bits (533), Expect = 2.490e-58 Identity = 174/426 (40.85%), Postives = 216/426 (50.70%), Query Frame = 1
Query: 1 SFSQGVMRRRTGAAGAGPKNNHNLSPSLNLLAAALAGAVNQIFTLPLENITTKMQVQQQ---TVANEGGSPTPRPCARNRVCATGTAAATLPYDGGVDGMTGSGQGTERLKPRGRDNAESTERGRQQTEHQETRQSPQPPKRRRQRPRTSLTAVALNLYREGNGMTRFWRGFAPSLVLTCNPAINYTAFDLLKAFWLKRRITA-----VGADTLSSGRSPSLGGQGGN--FLDPLEAFVVAAAAKCLATMITYPLIRAKVVLMTSTSDPFSSGGLPPPHPLQSFPTTPVTTTTIQ--TADTDVVAS-------EPRGAGDGGPCDPPPLAAGERLTTP------------EQAGGILSPAPVTLGESLMEAGGVFTVPETAGGRNRDVRSVDNCTSGIGAVLVEIVRREGLGGLYAGCGAQVIPRV 1185
+F +G+MRR + L PSLNLLAAA+AGAVNQ FTLPLENITT+MQ Q +V N G G + P DG G+ GT R P A+ T+ G + P KR ++RPR S+ AV LYREG G+ RFWRGFAPSL+LTCNPAINYTAFD+LKA WL+RR A VG+ T ++G S G FL+PLEAF+VAAAAK LAT++TYPLIRAKVVLMT+ S P S+ + S P P + Q T V S EP G G G + ER T GG P +LG + E+ +A R + + VLV+I RREG+GGLYAGCGAQ++ +
Sbjct: 168 AFIKGLMRRXXXXXXXXXXASKPLRPSLNLLAAAMAGAVNQAFTLPLENITTRMQTAPQRTPSVENNDGE------GAGERGGHGAMEGSSPLDGRRCGVGNDTNGTWR-DPVPATTAKVTQAGGD---------NQAPIKRGQRRPRQSVAAVTGELYREGGGLGRFWRGFAPSLILTCNPAINYTAFDILKALWLRRRDAAAVAAGVGSST-TAGASXXXXXXXGTEGFLNPLEAFLVAAAAKSLATLVTYPLIRAKVVLMTAPSSP-SAPIVDRGRGNCSSPAVPPAASASQLITPKGHVFGSCGSGKIGEPTGEGRDGGDERLSNNGEERAATAXXXXADADATGMSDRGGSGHPIDASLGSAAAES---TVAASSASAVGRGEGTTGGEMHSMATVLVDIFRREGIGGLYAGCGAQLLHTI 572
BLAST of mRNA_H-elongata_contig68920.14534.1 vs. uniprot
Match: A0A835YZE1_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE1_9STRA) HSP 1 Score: 116 bits (291), Expect = 7.200e-25 Identity = 92/251 (36.65%), Postives = 119/251 (47.41%), Query Frame = 1
Query: 82 LNLLAAALAGAVNQIFTLPLENITTKMQVQQQTVANEGGSPTPRPCARNRVCAT-GTAAATLPYDGGVDGMTGSGQGTERLKPRGRDNAESTERGRQQTEHQETRQSPQPPKRRRQRPRT-----------------------SLTAVALNLYREGNGMTRFWRGFAPSLVLTCNPAINYTAFDLLKAFWLKRRITAVGADTLSSGRSPSLGGQGGNFLDPLEAFVVAAAAKCLATMITYPLIRAKVVLMT 762
L+LL AALAGA+N + TLP++N+ T++Q A+ P R ++ T G A P G G G QQ +H E P R SL+A +L+ EG G+ RFWRG PS++LTCNPAINYTAFD LKA +L R + + GR P G FL PL AF +AAAAK +AT++TYPLIRAKV++MT
Sbjct: 124 LSLLTAALAGAINMLLTLPIDNVCTRLQT-----ADAPAQPPARRDGESKAAVTHGETAQQTPSAVEAGDAGGDGNGAP-----------------QQQQHSEDVSVGGTPVATSLREXXXXXXXXXXXXXXXXXXXXXXXXXSLSAAVADLHDEG-GVPRFWRGLLPSMILTCNPAINYTAFDALKAAYLARWV--------NRGRPP---GHHAEFLGPLAAFGLAAAAKAVATLVTYPLIRAKVIMMT 340
BLAST of mRNA_H-elongata_contig68920.14534.1 vs. uniprot
Match: D0NK70_PHYIT (Mitochondrial Carrier (MC) Family n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NK70_PHYIT) HSP 1 Score: 88.2 bits (217), Expect = 1.180e-15 Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 430 PRTSLTAVALNLYREGNGMTRFWRGFAPSLVLTCNPAINYTAFDLLKAFWLKRRITAVGADTLSSGRSPSLGGQGGNFLDPLEAFVVAAAAKCLATMITYPLIRAKVVL 756
P ++ +A +Y E +G+T FW+GF PSLVL NP+INYT FD LK ++ A A +SS L LEAF++AA AK +AT+ITYP+IRAKV++
Sbjct: 176 PSRTMWGIAKEIYAE-DGLTSFWKGFIPSLVLVSNPSINYTIFDKLKLQLQHSKMVATNATRMSS-------------LTALEAFILAAIAKAVATIITYPVIRAKVLM 270
BLAST of mRNA_H-elongata_contig68920.14534.1 vs. uniprot
Match: A0A5D6XFK1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFK1_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.470e-15 Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 1
Query: 439 SLTAVALNLYREGNGMTRFWRGFAPSLVLTCNPAINYTAFDLLKAFWLKRRITAVGADTLSSGRSPSLGGQGGNFLDPLEAFVVAAAAKCLATMITYPLIRAKVVL 756
S+ +A +Y E +G+ FW+GF PSLVL NP+IN+T FD LK ++ A GA L+S L LEAFV+AA AK +AT++TYP+IRAKV++
Sbjct: 187 SMLELAREIYAE-DGVLSFWKGFVPSLVLVTNPSINFTIFDKLKLRVQTAKMAAAGASRLAS-------------LTALEAFVIAAIAKAIATLLTYPIIRAKVLM 278
BLAST of mRNA_H-elongata_contig68920.14534.1 vs. uniprot
Match: A0A421FVX9_9STRA (Uncharacterized protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FVX9_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 8.030e-15 Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 439 SLTAVALNLYREGNGMTRFWRGFAPSLVLTCNPAINYTAFDLLKAFWLKRRITAVGADTLSSGRSPSLGGQGGNFLDPLEAFVVAAAAKCLATMITYPLIRAKVVL 756
++ +A +Y E +G+ FW+GF PSLVL NP+INYT FD LK ++ A A LSS L LEAF++AA AK +AT+ITYP+IRAKV++
Sbjct: 157 TMWGIAKEIYAE-DGLMSFWKGFIPSLVLVSNPSINYTIFDKLKLQLQHSKMAASNAKRLSS-------------LSALEAFILAAIAKAVATIITYPIIRAKVLM 248
BLAST of mRNA_H-elongata_contig68920.14534.1 vs. uniprot
Match: H3GK99_PHYRM (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=H3GK99_PHYRM) HSP 1 Score: 85.5 bits (210), Expect = 1.000e-14 Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 430 PRTSLTAVALNLYREGNGMTRFWRGFAPSLVLTCNPAINYTAFDLLKAFWLKRRITAVGADTLSSGRSPSLGGQGGNFLDPLEAFVVAAAAKCLATMITYPLIRAKVVL 756
P ++ ++A +Y E +G+ FW+GF PSLVL NP+INYT FD LK ++ A A +SS L LEAF++AA AK +AT+ITYP+IRAKV++
Sbjct: 177 PSRTMWSLAQEIYAE-DGLLSFWKGFIPSLVLVSNPSINYTVFDKLKLQLQHSKMAASNAKRVSS-------------LTALEAFILAAIAKAIATIITYPIIRAKVLM 271
BLAST of mRNA_H-elongata_contig68920.14534.1 vs. uniprot
Match: K3W5V3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5V3_GLOUD) HSP 1 Score: 84.0 bits (206), Expect = 3.820e-14 Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 1
Query: 451 VALNLYREGNGMTRFWRGFAPSLVLTCNPAINYTAFDLLKAFWLKRRITAVGADTLSSGRSPSLGGQGGNFLDPLEAFVVAAAAKCLATMITYPLIRAKVVL 756
+A +Y E +G+ FW+GF PSLVL NP+IN+T FD LK + ++ A GA L+S L EAFV+AA AK +AT+ITYP+IRAKV++
Sbjct: 194 IAREIYAE-DGLVSFWKGFIPSLVLVTNPSINFTIFDKLKLRLQRSKMLAAGATRLAS-------------LTAWEAFVLAAIAKAIATVITYPVIRAKVLM 281
BLAST of mRNA_H-elongata_contig68920.14534.1 vs. uniprot
Match: M4BP29_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BP29_HYAAE) HSP 1 Score: 82.8 bits (203), Expect = 6.170e-14 Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 1
Query: 442 LTAVALNLYREGNGMTRFWRGFAPSLVLTCNPAINYTAFDLLKAFWLKRRITAVGADTLSSGRSPSLGGQGGNFLDPLEAFVVAAAAKCLATMITYPLIRAKVVLMTSTSDP 777
+ +A ++Y E NG FW+GF PSLVL NP+INYT FD LK+ ++ A A SS L LEAFV+AA AK +AT++TYP+IRAKV LM + +P
Sbjct: 159 MWGIARDIYAE-NGWMSFWKGFIPSLVLVSNPSINYTIFDRLKSQLQLSKMAAGKAKRASS-------------LTALEAFVLAAIAKAVATVLTYPVIRAKV-LMQAQKEP 255
BLAST of mRNA_H-elongata_contig68920.14534.1 vs. uniprot
Match: A0A3M6VFR0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VFR0_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 8.600e-14 Identity = 50/115 (43.48%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 439 SLTAVALNLYREGNGMTRFWRGFAPSLVLTCNPAINYTAFDLLKAFWLKRRITAVGADTLSSGRSPSLGGQGGNFLDPLEAFVVAAAAKCLATMITYPLIRAKVVLMTSTSDPFS 783
++ +A +Y E +G+ FW+GF PSLVL NP+INYT FD LK ++ A A +SS L LEAF +AA AK +AT++TYP+IRAKV LM + P S
Sbjct: 161 TMWGIAKEIYAE-DGLMSFWKGFIPSLVLVSNPSINYTIFDKLKLQLQHSKMAAGNAKRVSS-------------LTALEAFTLAAIAKAIATILTYPVIRAKV-LMQAQKKPIS 260
BLAST of mRNA_H-elongata_contig68920.14534.1 vs. uniprot
Match: A0A024GMU3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMU3_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 2.820e-13 Identity = 69/231 (29.87%), Postives = 99/231 (42.86%), Query Frame = 1
Query: 70 LSPSLNLLAAALAGAVNQIFTLPLENITTKMQVQQQTVANEGGSPTPRPCARNRVCATGTAAATLPYDGGVDGMTGSGQGTERLKPRGRDNAESTERGRQQTEHQETRQSPQPPKRRRQRPRTSLTAVALNLYREGNGMTRFWRGFAPSLVLTCNPAINYTAFDLLKAFWLKRRITAVGADTLSSGRSPSLGGQGGNFLDPLEAFVVAAAAKCLATMITYPLIRAKVVLMT 762
L+ SL+LL A LAGA+N TLPLE I T+ Q+ A+N + K +G + A+ +Y E +G+T FWRG+AP+LVLT NP+INYT FD LK + + TA+ T R+ LEAF++AA +K +AT++TYP+IRAKV++ +
Sbjct: 114 LTTSLSLLVATLAGAINMTMTLPLEVINTRAQLS----------------AKNET---------------------------KFKSKG------------------------------------VFALGSEIYHE-DGLTAFWRGYAPALVLTSNPSINYTIFDTLKDTLQRWKRTAL---TKHCQRAT---------FTALEAFLLAAISKAIATVVTYPIIRAKVLMQS 252 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68920.14534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68920.14534.1 >prot_H-elongata_contig68920.14534.1 ID=prot_H-elongata_contig68920.14534.1|Name=mRNA_H-elongata_contig68920.14534.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=391bp MRRRTGAAGAGPKNNHNLSPSLNLLAAALAGAVNQIFTLPLENITTKMQVback to top mRNA from alignment at H-elongata_contig68920:592..2043- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig68920.14534.1 ID=mRNA_H-elongata_contig68920.14534.1|Name=mRNA_H-elongata_contig68920.14534.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1452bp|location=Sequence derived from alignment at H-elongata_contig68920:592..2043- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig68920:592..2043- >mRNA_H-elongata_contig68920.14534.1 ID=mRNA_H-elongata_contig68920.14534.1|Name=mRNA_H-elongata_contig68920.14534.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2346bp|location=Sequence derived from alignment at H-elongata_contig68920:592..2043- (Himanthalia elongata Himel1 dioecious)back to top |