mRNA_H-elongata_contig689.14531.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig689.14531.1
Unique NamemRNA_H-elongata_contig689.14531.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 9.080e-62
Identity = 126/329 (38.30%), Postives = 187/329 (56.84%), Query Frame = 1
Query:    7 ANPCVFRKVADGEVEMVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPTPS-KADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM*YLLHTKDWGITYG-GQGCRLCMKAYTDSDFGAWLDTRRSLSGAVLMLAKGAISWYFRMEEVTASGTSEAEYVASSDAVKEVIFLRQGQAFMEPSMRVGAVYVFEDNERVINLPTNKHASRRTKHIDVKHHLARDASDARKVRVAYVRSEDQQPDLLTKPL 987
            A+ CVFR + DG V +++V+H+DDI A   +     +F A L +   +K++G++ +Y GC   RN++   LTI Q  + + +   + V     +P +SGV      ADE     V  E   FP+R+ VG LMW AT TR DIA+AV AV R+   P   H  AAM I+ Y   T  +GI++  G      ++ Y D+DF +    RRS+SG ++    GA+SW+ R ++     T+EAEYVA  D VKE++FLRQ   FM P + +  + VFEDN+  I L  N  ++  +KHIDV+HH  R+  + +++ V +V S  Q+ D LTK L
Sbjct:  127 ADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADE-----VATE---FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 446          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 8.500e-60
Identity = 119/329 (36.17%), Postives = 189/329 (57.45%), Query Frame = 1
Query:    7 ANPCVFRKVADGEVEMVVVIHMDDIIAY-TKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPTPSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM*YLLHTKDWGITYG-GQGCRLCMKAYTDSDFGAWLDTRRSLSGAVLMLAKGAISWYFRMEEVTASGTSEAEYVASSDAVKEVIFLRQGQAFMEPSMRVGAVYVFEDNERVINLPTNKHASRRTKHIDVKHHLARDASDARKVRVAYVRSEDQQPDLLTKPL 987
            A+ CVFR V DGEV +++V+H+DDI A  TK+     +F   L +   +K +G++ +Y GC+  R+R+A  LTI Q  Y + + E   V+    IP    +PT  +    W+  V +    +P+R  +G L+W A +TR DIA+AV AV R+   P   H +AA+ I+ Y + T  +GI++  G      +  + D+D+ +    RRS+SG V+M A GAI+W+ + ++     T++AEYVA +D  KE++FLR+   FM P      + ++EDNE  I +  +  ++  +KHIDV+HH  R   D ++V + +V S+ Q  D LTK L
Sbjct:   49 ADSCVFRLVEDGEVVLILVVHVDDIFAVGTKERCD--QFGKDLGEYVPVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERHGVEWGGGIP----LPTTWRL---WDSDVNEPSVEYPFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKAL 368          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 4.450e-59
Identity = 121/329 (36.78%), Postives = 189/329 (57.45%), Query Frame = 1
Query:    7 ANPCVFRKVADGEVEMVVVIHMDDIIAY-TKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPTPSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM*YLLHTKDWGITY-GGQGCRLCMKAYTDSDFGAWLDTRRSLSGAVLMLAKGAISWYFRMEEVTASGTSEAEYVASSDAVKEVIFLRQGQAFMEPSMRVGAVYVFEDNERVINLPTNKHASRRTKHIDVKHHLARDASDARKVRVAYVRSEDQQPDLLTKPL 987
            A+ CVFR V +GEV +++V+H+DDI A  TK+     +F   L +   +K +G++ +Y GC+  R+R+A  LTI Q  Y E + E + V+    IP    +PT  K    W+    +     P+R  VG L+W A +TR DIA++V AV R+S  P   H KAA+ I+ Y + T  +GI++  G      +  + ++D+ +    RRS+SG V+M A GAI+W+ + ++     T++AEYVA +D  KE++FLRQ   FM P      + ++EDNE  I +  +  ++  +KHIDV+HH  R   D ++V + +V S+ Q  D LTK L
Sbjct:  101 ADSCVFRFVEEGEVVLLLVVHVDDIFAVGTKERCD--QFGKDLGEYVPVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERYGVEWGGGIP----LPTTWKL---WDFDADEPSVEHPFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKAL 420          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 3.170e-58
Identity = 126/329 (38.30%), Postives = 187/329 (56.84%), Query Frame = 1
Query:    7 ANPCVFRKVADGEVEMVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPTPS-KADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM*YLLHTKDWGITYG-GQGCRLCMKAYTDSDFGAWLDTRRSLSGAVLMLAKGAISWYFRMEEVTASGTSEAEYVASSDAVKEVIFLRQGQAFMEPSMRVGAVYVFEDNERVINLPTNKHASRRTKHIDVKHHLARDASDARKVRVAYVRSEDQQPDLLTKPL 987
            A+ CVFR + DG V +++V+H+DDI A   +     +F A L +   +K++G++ +Y GC   RN++   LTI Q  + + +   + V     +P +SGV      ADE     V  E   FP+R+ VG LMW AT TR DIA+AV AV R+   P   H  AAM I+ Y   T  +GI++  G      ++ Y D+DF +    RRS+SG ++    GA+SW+ R ++     T+EAEYVA  D VKE++FLRQ   FM P + +  + VFEDN+  I L  N  ++  +KHIDV+HH  R+  + +++ V +V S  Q+ D LTK L
Sbjct: 1463 ADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADE-----VATE---FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 1782          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 3.180e-58
Identity = 126/329 (38.30%), Postives = 187/329 (56.84%), Query Frame = 1
Query:    7 ANPCVFRKVADGEVEMVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPTPS-KADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM*YLLHTKDWGITYG-GQGCRLCMKAYTDSDFGAWLDTRRSLSGAVLMLAKGAISWYFRMEEVTASGTSEAEYVASSDAVKEVIFLRQGQAFMEPSMRVGAVYVFEDNERVINLPTNKHASRRTKHIDVKHHLARDASDARKVRVAYVRSEDQQPDLLTKPL 987
            A+ CVFR + DG V +++V+H+DDI A   +     +F A L +   +K++G++ +Y GC   RN++   LTI Q  + + +   + V     +P +SGV      ADE     V  E   FP+R+ VG LMW AT TR DIA+AV AV R+   P   H  AAM I+ Y   T  +GI++  G      ++ Y D+DF +    RRS+SG ++    GA+SW+ R ++     T+EAEYVA  D VKE++FLRQ   FM P + +  + VFEDN+  I L  N  ++  +KHIDV+HH  R+  + +++ V +V S  Q+ D LTK L
Sbjct: 1249 ADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADE-----VATE---FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 1568          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 3.350e-58
Identity = 126/329 (38.30%), Postives = 187/329 (56.84%), Query Frame = 1
Query:    7 ANPCVFRKVADGEVEMVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPTPS-KADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM*YLLHTKDWGITYG-GQGCRLCMKAYTDSDFGAWLDTRRSLSGAVLMLAKGAISWYFRMEEVTASGTSEAEYVASSDAVKEVIFLRQGQAFMEPSMRVGAVYVFEDNERVINLPTNKHASRRTKHIDVKHHLARDASDARKVRVAYVRSEDQQPDLLTKPL 987
            A+ CVFR + DG V +++V+H+DDI A   +     +F A L +   +K++G++ +Y GC   RN++   LTI Q  + + +   + V     +P +SGV      ADE     V  E   FP+R+ VG LMW AT TR DIA+AV AV R+   P   H  AAM I+ Y   T  +GI++  G      ++ Y D+DF +    RRS+SG ++    GA+SW+ R ++     T+EAEYVA  D VKE++FLRQ   FM P + +  + VFEDN+  I L  N  ++  +KHIDV+HH  R+  + +++ V +V S  Q+ D LTK L
Sbjct: 1317 ADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADE-----VATE---FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 1636          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 7.350e-58
Identity = 123/329 (37.39%), Postives = 185/329 (56.23%), Query Frame = 1
Query:    7 ANPCVFRKVADGEVEMVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPTPS-KADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM*YLLHTKDWGITYG-GQGCRLCMKAYTDSDFGAWLDTRRSLSGAVLMLAKGAISWYFRMEEVTASGTSEAEYVASSDAVKEVIFLRQGQAFMEPSMRVGAVYVFEDNERVINLPTNKHASRRTKHIDVKHHLARDASDARKVRVAYVRSEDQQPDLLTKPL 987
            A+ CVFR + DG V +++V+H+DDI A   +     +F A L +   +K++G++ +Y GC   RN++   LTI Q  + + +   + V     +P +SGV      ADE            FP+R+ VG LMW AT TR DIA+AV AV R+   P   H  AAM I+ Y   T  +GI++  G      ++ Y D+DF +    RRS+SG ++    GA+SW+ R ++     T+EAEYVA  D VKE++FLRQ   FM P + +  + +FEDN+  I L  N  ++  +KHIDV+HH  R+  + +++ V +V S  Q+ D LTK L
Sbjct:  957 ADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADE--------VATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 1276          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 3.340e-57
Identity = 126/329 (38.30%), Postives = 189/329 (57.45%), Query Frame = 1
Query:    4 KANPCVFRKVADGEVEMVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPT-PSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM*YLLHTKDWGITYGGQGCRLCMKAYTDSDFGAWLDTRRSLSGAVLMLAKGAISWYFRMEEVTASGTSEAEYVASSDAVKEVIFLRQGQAFMEPSMRVGAVYVFEDNERVINLPTNKHASRRTKHIDVKHHLARDASDARKVRVAYVRSEDQQPDLLTKPL 987
            KA+PCVFRK+ D  V M++VI++DDI+    D       +A L +KF  K++G+  ++ GC I R+ +A  L I Q  Y++SMVE FDVK  S+IPAT G    P + DE        E   +P R+A+G +MW +T +R D++ AV AV R +  P   H  A  KI+ YL  T+D GITY  +G  L +  Y D+ + A  + RRS+SG    +    +S   + + + +  ++EAEY+A+ + VKE +F+R   +F+ P     ++ V EDN+  I L  N  +S RTKHIDV++H  R    +  + V +V + +Q  DLLTK L
Sbjct:  912 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE--------EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 3.640e-57
Identity = 126/329 (38.30%), Postives = 189/329 (57.45%), Query Frame = 1
Query:    4 KANPCVFRKVADGEVEMVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPT-PSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM*YLLHTKDWGITYGGQGCRLCMKAYTDSDFGAWLDTRRSLSGAVLMLAKGAISWYFRMEEVTASGTSEAEYVASSDAVKEVIFLRQGQAFMEPSMRVGAVYVFEDNERVINLPTNKHASRRTKHIDVKHHLARDASDARKVRVAYVRSEDQQPDLLTKPL 987
            KA+PCVFRK+ D  V M++VI++DDI+    D       +A L +KF  K++G+  ++ GC I R+ +A  L I Q  Y++SMVE FDVK  S+IPAT G    P + DE        E   +P R+A+G +MW +T +R D++ AV AV R +  P   H  A  KI+ YL  T+D GITY  +G  L +  Y D+ + A  + RRS+SG    +    +S   + + + +  ++EAEY+A+ + VKE +F+R   +F+ P     ++ V EDN+  I L  N  +S RTKHIDV++H  R    +  + V +V + +Q  DLLTK L
Sbjct: 1291 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE--------EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608          
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 3.670e-57
Identity = 126/329 (38.30%), Postives = 189/329 (57.45%), Query Frame = 1
Query:    4 KANPCVFRKVADGEVEMVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRNRKARELTIDQHFYVESMVETFDVKKASKIPATSGVPT-PSKADEPWNPKVKKEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMKIM*YLLHTKDWGITYGGQGCRLCMKAYTDSDFGAWLDTRRSLSGAVLMLAKGAISWYFRMEEVTASGTSEAEYVASSDAVKEVIFLRQGQAFMEPSMRVGAVYVFEDNERVINLPTNKHASRRTKHIDVKHHLARDASDARKVRVAYVRSEDQQPDLLTKPL 987
            KA+PCVFRK+ D  V M++VI++DDI+    D       +A L +KF  K++G+  ++ GC I R+ +A  L I Q  Y++SMVE FDVK  S+IPAT G    P + DE        E   +P R+A+G +MW +T +R D++ AV AV R +  P   H  A  KI+ YL  T+D GITY  +G  L +  Y D+ + A  + RRS+SG    +    +S   + + + +  ++EAEY+A+ + VKE +F+R   +F+ P     ++ V EDN+  I L  N  +S RTKHIDV++H  R    +  + V +V + +Q  DLLTK L
Sbjct: 1311 KADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE--------EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig689.14531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFG2_9PHAE9.080e-6238.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWK8_9PHAE8.500e-6036.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRZ9_9PHAE4.450e-5936.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE3.170e-5838.30Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE3.180e-5838.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE3.350e-5838.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG40_9PHAE7.350e-5837.39Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KSG8_9PHAE3.340e-5738.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE3.640e-5738.30Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE3.670e-5738.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig689contigH-elongata_contig689:5925..6911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score92.4
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog65672.G4TWW2
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size987
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig689.14531.1prot_H-elongata_contig689.14531.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig689 5976..6434 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931085.3066192-UTR-H-elongata_contig689:5924..59751622931085.3066192-UTR-H-elongata_contig689:5924..5975Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig689 5925..5975 +
1691679691.840325-UTR-H-elongata_contig689:5924..59751691679691.840325-UTR-H-elongata_contig689:5924..5975Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig689 5925..5975 +
1622931085.3660884-UTR-H-elongata_contig689:6434..69111622931085.3660884-UTR-H-elongata_contig689:6434..6911Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig689 6435..6911 +
1691679691.873605-UTR-H-elongata_contig689:6434..69111691679691.873605-UTR-H-elongata_contig689:6434..6911Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig689 6435..6911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931085.3486657-CDS-H-elongata_contig689:5975..64341622931085.3486657-CDS-H-elongata_contig689:5975..6434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig689 5976..6434 +
1691679691.854265-CDS-H-elongata_contig689:5975..64341691679691.854265-CDS-H-elongata_contig689:5975..6434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig689 5976..6434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig689.14531.1

>prot_H-elongata_contig689.14531.1 ID=prot_H-elongata_contig689.14531.1|Name=mRNA_H-elongata_contig689.14531.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
MVVVIHMDDIIAYTKDHATLYRFVAKLAQKFKLKDMGDVGYYVGCHIMRN
RKARELTIDQHFYVESMVETFDVKKASKIPATSGVPTPSKADEPWNPKVK
KEMRRFPYRKAVGVLMWTATMTRLDIASAVCAVTRFSKIPGPAHKKAAMK
IM*
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mRNA from alignment at H-elongata_contig689:5925..6911+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig689.14531.1 ID=mRNA_H-elongata_contig689.14531.1|Name=mRNA_H-elongata_contig689.14531.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=987bp|location=Sequence derived from alignment at H-elongata_contig689:5925..6911+ (Himanthalia elongata Himel1 dioecious)
GCAAAGGCGAATCCGTGCGTATTTCGTAAGGTCGCTGACGGCGAGGTGGA GATGGTGGTGGTCATACACATGGACGACATTATTGCCTATACTAAAGACC ACGCGACGTTGTATAGATTCGTGGCTAAGCTTGCGCAAAAGTTCAAATTG AAGGACATGGGCGACGTCGGGTATTACGTGGGCTGTCACATCATGAGGAA CCGCAAGGCGCGCGAGTTGACCATCGATCAACACTTTTACGTGGAGTCGA TGGTGGAAACGTTCGACGTCAAGAAGGCAAGCAAGATACCGGCTACGTCG GGGGTACCAACACCCTCAAAGGCGGACGAACCGTGGAATCCGAAGGTCAA GAAAGAAATGAGGAGGTTTCCATACCGGAAGGCAGTGGGGGTGCTTATGT GGACGGCGACGATGACACGGCTGGACATTGCGAGCGCAGTATGCGCTGTG ACCAGGTTCTCCAAAATCCCTGGGCCGGCGCATAAGAAGGCGGCGATGAA GATCATGTAGTATCTTCTTCACACCAAGGACTGGGGGATTACATACGGTG GACAGGGCTGTAGACTCTGCATGAAGGCATACACGGACTCGGATTTTGGA GCCTGGTTGGATACGAGACGATCGTTGTCGGGTGCGGTGTTGATGCTCGC GAAGGGGGCTATCAGCTGGTACTTCAGGATGGAAGAAGTGACAGCATCAG GTACCTCGGAGGCAGAGTACGTTGCTTCATCAGATGCGGTAAAGGAGGTT ATATTTTTGAGACAGGGTCAGGCGTTCATGGAACCGTCGATGAGGGTTGG TGCAGTGTATGTATTCGAGGACAATGAGCGGGTCATTAACCTGCCCACCA ACAAGCATGCTAGTCGTAGGACAAAGCATATTGATGTCAAACACCATTTG GCGAGGGACGCGTCTGACGCGCGAAAGGTTAGAGTAGCGTATGTGAGGTC GGAAGATCAGCAACCGGATTTGCTCACCAAGCCGTTA
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Coding sequence (CDS) from alignment at H-elongata_contig689:5925..6911+

>mRNA_H-elongata_contig689.14531.1 ID=mRNA_H-elongata_contig689.14531.1|Name=mRNA_H-elongata_contig689.14531.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig689:5925..6911+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGTGGTCATACACATGGACGACATTATTGCCTATACTAAAGACCA
CGCGACGTTGTATAGATTCGTGGCTAAGCTTGCGCAAAAGTTCAAATTGA
AGGACATGGGCGACGTCGGGTATTACGTGGGCTGTCACATCATGAGGAAC
CGCAAGGCGCGCGAGTTGACCATCGATCAACACTTTTACGTGGAGTCGAT
GGTGGAAACGTTCGACGTCAAGAAGGCAAGCAAGATACCGGCTACGTCGG
GGGTACCAACACCCTCAAAGGCGGACGAACCGTGGAATCCGAAGGTCAAG
AAAGAAATGAGGAGGTTTCCATACCGGAAGGCAGTGGGGGTGCTTATGTG
GACGGCGACGATGACACGGCTGGACATTGCGAGCGCAGTATGCGCTGTGA
CCAGGTTCTCCAAAATCCCTGGGCCGGCGCATAAGAAGGCGGCGATGAAG
ATCATGTAGATGGTGGTGGTCATACACATGGACGACATTATTGCCTATAC
TAAAGACCACGCGACGTTGTATAGATTCGTGGCTAAGCTTGCGCAAAAGT
TCAAATTGAAGGACATGGGCGACGTCGGGTATTACGTGGGCTGTCACATC
ATGAGGAACCGCAAGGCGCGCGAGTTGACCATCGATCAACACTTTTACGT
GGAGTCGATGGTGGAAACGTTCGACGTCAAGAAGGCAAGCAAGATACCGG
CTACGTCGGGGGTACCAACACCCTCAAAGGCGGACGAACCGTGGAATCCG
AAGGTCAAGAAAGAAATGAGGAGGTTTCCATACCGGAAGGCAGTGGGGGT
GCTTATGTGGACGGCGACGATGACACGGCTGGACATTGCGAGCGCAGTAT
GCGCTGTGACCAGGTTCTCCAAAATCCCTGGGCCGGCGCATAAGAAGGCG
GCGATGAAGATCATGTAG
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