mRNA_H-elongata_contig68895.14530.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: D7G470_ECTSI (HDAC_interact domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G470_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 3.270e-21 Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query: 7 RSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
R +TV DA +YL A++ E+R+QPEIY+EFL +MGRFK +Q+ P ++I EVARLFRGR L+LRFN FLP+ K E
Sbjct: 38 RWLTVNDAMDYLDAVKLEFRHQPEIYDEFLAIMGRFKTKQMLPPDVIVEVARLFRGRNSLVLRFNRFLPEGFKIE 112
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A7S3XUT3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUT3_HETAK) HSP 1 Score: 80.5 bits (197), Expect = 7.620e-18 Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 1 GTRSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
G R + V DA YL ++ E+ ++PEIYNEFLD+M FKA+ I +I +V+RLFRG LIL FN FLPD K E
Sbjct: 8 GMRELKVEDALLYLDQVKMEFSDKPEIYNEFLDIMKNFKAQAIDTPGVITKVSRLFRGYNKLILGFNTFLPDGYKIE 84
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A7S1TC93_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TC93_9RHOD) HSP 1 Score: 83.2 bits (204), Expect = 7.020e-17 Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 1 GTRSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
G R + V DA YL+ ++RE+ NQP++YN+FLD+M FKA+ I E+I V+ LFRG LIL FN FLP K E
Sbjct: 545 GYRQLKVEDALAYLEDVKREFHNQPQVYNQFLDIMKEFKAQTIDTTEVIRRVSHLFRGHPKLILGFNTFLPPGYKIE 621
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A7S1GFG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GFG6_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 3.140e-15 Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 7 RSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
R + V DA YL +++++ +QP+IYN+FL++M FKAE IG +I V+ LFRG LIL FN FLP K E
Sbjct: 47 RQLKVEDALAYLDKVKQQFGSQPQIYNQFLEIMKNFKAETIGTPGVIQRVSELFRGHAPLILGFNTFLPPGYKIE 121
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A4Z2IP95_9TELE (Paired amphipathic helix protein Sin3a n=2 Tax=Cottales TaxID=1490021 RepID=A0A4Z2IP95_9TELE) HSP 1 Score: 73.6 bits (179), Expect = 3.570e-15 Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 19 VADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
V DA YL ++ ++ NQP++YN+FLD+M FK++ I L +I+ V++LFRG LI+ FN FLP K E
Sbjct: 37 VEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTLGVISRVSQLFRGHPDLIVGFNTFLPPGYKIE 107
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: UPI001ED85999 (paired amphipathic helix protein Sin3a-like n=1 Tax=Scatophagus argus TaxID=75038 RepID=UPI001ED85999) HSP 1 Score: 72.8 bits (177), Expect = 1.120e-14 Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 19 VADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
V DA YL ++R++ NQP++YN+FLD+M FK++ I +I V++LF+G LI+ FN FLP + K E
Sbjct: 15 VEDALSYLDQVKRKFGNQPQVYNDFLDIMKEFKSQSIDTPGVINRVSQLFKGHPDLIMGFNTFLPPRYKIE 85
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A7S2L4D1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L4D1_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.250e-14 Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 7 RSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
R + V DA YL ++ E+ ++P+IYNEFLD+M FK+++I +I VA LF G K L+L FN FLP+ + E
Sbjct: 2 RELRVEDALMYLDQVKMEFGDRPQIYNEFLDIMKTFKSQEIDTPGVIRRVAALFHGNKRLVLGFNTFLPEGFRIE 76
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A836CQ34_9STRA (Paired amphipathic helix (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ34_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.370e-14 Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 7 RSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPD 216
R + V DA YL ++ E+ ++PEIY EFLD+M FKA+ I L +I + LFRG LIL FN FLPD
Sbjct: 2 RELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD 71
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A7R9YDU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDU9_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.750e-14 Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 7 RSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
R + V DA YL ++ E+ ++PEIYNEFL++M FKA++I +I V+ LFRG LIL FN FLP+ K E
Sbjct: 5 RELKVEDALIYLDQVKMEFSSKPEIYNEFLEIMKNFKAQEIDTPGVIRRVSNLFRGYNSLILGFNTFLPEGYKIE 79
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A7S3P4U3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P4U3_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.910e-14 Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 1 GTRSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLK 225
G R + V DA YL ++RE+RN+P +YNEFL +M FK +++ +I V+RLFRG LIL FN FLP+ K
Sbjct: 293 GMRELRVEDALLYLDDVKREFRNRPAVYNEFLTIMKNFKTQEVDTPGVIQRVSRLFRGYNRLILGFNTFLPEGYK 367 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68895.14530.1 >prot_H-elongata_contig68895.14530.1 ID=prot_H-elongata_contig68895.14530.1|Name=mRNA_H-elongata_contig68895.14530.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp GTRSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAback to top mRNA from alignment at H-elongata_contig68895:1307..1537+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig68895.14530.1 ID=mRNA_H-elongata_contig68895.14530.1|Name=mRNA_H-elongata_contig68895.14530.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig68895:1307..1537+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig68895:1307..1537+ >mRNA_H-elongata_contig68895.14530.1 ID=mRNA_H-elongata_contig68895.14530.1|Name=mRNA_H-elongata_contig68895.14530.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig68895:1307..1537+ (Himanthalia elongata Himel1 dioecious)back to top |