mRNA_H-elongata_contig68895.14530.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68895.14530.1
Unique NamemRNA_H-elongata_contig68895.14530.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: D7G470_ECTSI (HDAC_interact domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G470_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.270e-21
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    7 RSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
            R +TV DA +YL A++ E+R+QPEIY+EFL +MGRFK +Q+ P ++I EVARLFRGR  L+LRFN FLP+  K E
Sbjct:   38 RWLTVNDAMDYLDAVKLEFRHQPEIYDEFLAIMGRFKTKQMLPPDVIVEVARLFRGRNSLVLRFNRFLPEGFKIE 112          
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A7S3XUT3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUT3_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 7.620e-18
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 GTRSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
            G R + V DA  YL  ++ E+ ++PEIYNEFLD+M  FKA+ I    +I +V+RLFRG   LIL FN FLPD  K E
Sbjct:    8 GMRELKVEDALLYLDQVKMEFSDKPEIYNEFLDIMKNFKAQAIDTPGVITKVSRLFRGYNKLILGFNTFLPDGYKIE 84          
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A7S1TC93_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TC93_9RHOD)

HSP 1 Score: 83.2 bits (204), Expect = 7.020e-17
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 GTRSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
            G R + V DA  YL+ ++RE+ NQP++YN+FLD+M  FKA+ I   E+I  V+ LFRG   LIL FN FLP   K E
Sbjct:  545 GYRQLKVEDALAYLEDVKREFHNQPQVYNQFLDIMKEFKAQTIDTTEVIRRVSHLFRGHPKLILGFNTFLPPGYKIE 621          
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A7S1GFG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GFG6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.140e-15
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    7 RSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
            R + V DA  YL  +++++ +QP+IYN+FL++M  FKAE IG   +I  V+ LFRG   LIL FN FLP   K E
Sbjct:   47 RQLKVEDALAYLDKVKQQFGSQPQIYNQFLEIMKNFKAETIGTPGVIQRVSELFRGHAPLILGFNTFLPPGYKIE 121          
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A4Z2IP95_9TELE (Paired amphipathic helix protein Sin3a n=2 Tax=Cottales TaxID=1490021 RepID=A0A4Z2IP95_9TELE)

HSP 1 Score: 73.6 bits (179), Expect = 3.570e-15
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   19 VADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
            V DA  YL  ++ ++ NQP++YN+FLD+M  FK++ I  L +I+ V++LFRG   LI+ FN FLP   K E
Sbjct:   37 VEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTLGVISRVSQLFRGHPDLIVGFNTFLPPGYKIE 107          
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: UPI001ED85999 (paired amphipathic helix protein Sin3a-like n=1 Tax=Scatophagus argus TaxID=75038 RepID=UPI001ED85999)

HSP 1 Score: 72.8 bits (177), Expect = 1.120e-14
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   19 VADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
            V DA  YL  ++R++ NQP++YN+FLD+M  FK++ I    +I  V++LF+G   LI+ FN FLP + K E
Sbjct:   15 VEDALSYLDQVKRKFGNQPQVYNDFLDIMKEFKSQSIDTPGVINRVSQLFKGHPDLIMGFNTFLPPRYKIE 85          
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A7S2L4D1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L4D1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.250e-14
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    7 RSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
            R + V DA  YL  ++ E+ ++P+IYNEFLD+M  FK+++I    +I  VA LF G K L+L FN FLP+  + E
Sbjct:    2 RELRVEDALMYLDQVKMEFGDRPQIYNEFLDIMKTFKSQEIDTPGVIRRVAALFHGNKRLVLGFNTFLPEGFRIE 76          
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A836CQ34_9STRA (Paired amphipathic helix (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ34_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.370e-14
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    7 RSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPD 216
            R + V DA  YL  ++ E+ ++PEIY EFLD+M  FKA+ I  L +I   + LFRG   LIL FN FLPD
Sbjct:    2 RELKVEDALLYLDQVKMEFGDKPEIYKEFLDIMKNFKAQAIDMLGVINRASTLFRGYNKLILGFNTFLPD 71          
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A7R9YDU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDU9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.750e-14
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    7 RSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLKFE 231
            R + V DA  YL  ++ E+ ++PEIYNEFL++M  FKA++I    +I  V+ LFRG   LIL FN FLP+  K E
Sbjct:    5 RELKVEDALIYLDQVKMEFSSKPEIYNEFLEIMKNFKAQEIDTPGVIRRVSNLFRGYNSLILGFNTFLPEGYKIE 79          
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Match: A0A7S3P4U3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P4U3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.910e-14
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 GTRSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIAEVARLFRGRKYLILRFNLFLPDKLK 225
            G R + V DA  YL  ++RE+RN+P +YNEFL +M  FK +++    +I  V+RLFRG   LIL FN FLP+  K
Sbjct:  293 GMRELRVEDALLYLDDVKREFRNRPAVYNEFLTIMKNFKTQEVDTPGVIQRVSRLFRGYNRLILGFNTFLPEGYK 367          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68895.14530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G470_ECTSI3.270e-2160.00HDAC_interact domain-containing protein n=2 Tax=Ec... [more]
A0A7S3XUT3_HETAK7.620e-1851.95Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1TC93_9RHOD7.020e-1750.65Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S1GFG6_9STRA3.140e-1548.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A4Z2IP95_9TELE3.570e-1546.48Paired amphipathic helix protein Sin3a n=2 Tax=Cot... [more]
UPI001ED859991.120e-1445.07paired amphipathic helix protein Sin3a-like n=1 Ta... [more]
A0A7S2L4D1_9STRA1.250e-1445.33Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A836CQ34_9STRA1.370e-1450.00Paired amphipathic helix (Fragment) n=1 Tax=Tribon... [more]
A0A7R9YDU9_9STRA1.750e-1448.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3P4U3_9STRA1.910e-1448.00Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68895contigH-elongata_contig68895:1307..1537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1.5e-17
Seed eggNOG ortholog2880.D7G470
KEGG koko:K11644
KEGG Pathwayko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
EggNOG free text desc.histone deacetylation
EggNOG OGsCOG5602@1,KOG4204@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931085.2618647-CDS-H-elongata_contig68895:1306..15371622931085.2618647-CDS-H-elongata_contig68895:1306..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68895 1307..1537 +
1691679691.8259053-CDS-H-elongata_contig68895:1306..15371691679691.8259053-CDS-H-elongata_contig68895:1306..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68895 1307..1537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68895.14530.1prot_H-elongata_contig68895.14530.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68895 1307..1537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68895.14530.1

>prot_H-elongata_contig68895.14530.1 ID=prot_H-elongata_contig68895.14530.1|Name=mRNA_H-elongata_contig68895.14530.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
GTRSVTVADATEYLQAIRREYRNQPEIYNEFLDVMGRFKAEQIGPLEIIA
EVARLFRGRKYLILRFNLFLPDKLKFE
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mRNA from alignment at H-elongata_contig68895:1307..1537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68895.14530.1 ID=mRNA_H-elongata_contig68895.14530.1|Name=mRNA_H-elongata_contig68895.14530.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig68895:1307..1537+ (Himanthalia elongata Himel1 dioecious)
GGGACTAGGAGCGTAACAGTAGCGGATGCCACGGAATACTTGCAAGCGAT CAGGCGCGAGTATCGAAACCAGCCGGAGATATACAACGAATTCCTGGATG TTATGGGGCGCTTCAAGGCGGAACAAATCGGACCTCTCGAAATCATTGCC GAAGTCGCGAGACTTTTCCGCGGCCGAAAGTATCTTATCCTTCGCTTCAA TCTATTCTTGCCGGACAAATTGAAGTTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig68895:1307..1537+

>mRNA_H-elongata_contig68895.14530.1 ID=mRNA_H-elongata_contig68895.14530.1|Name=mRNA_H-elongata_contig68895.14530.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig68895:1307..1537+ (Himanthalia elongata Himel1 dioecious)
GGGACTAGGAGCGTAACAGTAGCGGATGCCACGGAATACTTGCAAGCGAT
CAGGCGCGAGTATCGAAACCAGCCGGAGATATACAACGAATTCCTGGATG
TTATGGGGCGCTTCAAGGCGGAACAAATCGGACCTCTCGAAATCATTGCC
GAAGTCGCGAGACTTTTCCGCGGCCGAAAGTATCTTATCCTTCGCTTCAA
TCTATTCTTGCCGGACAAATTGAAGTTCGAGGGGACTAGGAGCGTAACAG
TAGCGGATGCCACGGAATACTTGCAAGCGATCAGGCGCGAGTATCGAAAC
CAGCCGGAGATATACAACGAATTCCTGGATGTTATGGGGCGCTTCAAGGC
GGAACAAATCGGACCTCTCGAAATCATTGCCGAAGTCGCGAGACTTTTCC
GCGGCCGAAAGTATCTTATCCTTCGCTTCAATCTATTCTTGCCGGACAAA
TTGAAGTTCGAG
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