mRNA_H-elongata_contig68504.14486.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68504.14486.1
Unique NamemRNA_H-elongata_contig68504.14486.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig68504.14486.1 vs. uniprot
Match: D8LC01_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC01_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 6.390e-42
Identity = 70/101 (69.31%), Postives = 83/101 (82.18%), Query Frame = 1
Query:    7 LLGDMLRDSGGTDVPTSSSLEGKVVGLYFSASWCGPCRGFTPQLIKTYDAVRSAGKEFEVVLIGSDKKRDDFVRYHQKMPWLAVPFEDRLGQRSRWNCFFV 309
            LLG  L+DS   DVPT+++LEGKVV  YFSASWCGPCRGFTPQL+KTY+AVR+AGKEFEVVLIGSD+K DDF+ YH++MPWLA+PF DR  + S    F V
Sbjct:    6 LLGPSLKDSAENDVPTAAALEGKVVAFYFSASWCGPCRGFTPQLVKTYNAVRAAGKEFEVVLIGSDRKEDDFLLYHKEMPWLALPFPDRERKSSLSTKFRV 106          
BLAST of mRNA_H-elongata_contig68504.14486.1 vs. uniprot
Match: A0A6T0B168_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6T0B168_CHRCT)

HSP 1 Score: 109 bits (272), Expect = 3.570e-26
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    7 LLGDMLRDSGGTDVPTSSSLEGKVVGLYFSASWCGPCRGFTPQLIKTYDAVRSAGKEFEVVLIGSDKKRDDFVRYHQKMPWLAVPFEDR 273
            LLG  L  + G ++ T  +L+GK+VGLYFSA WC PCRGFTP L++TY  +++AGK FE+V + SDK +  F  Y  +MPWLAVPF DR
Sbjct:    5 LLGKSLTSASG-ELSTDDALKGKIVGLYFSAHWCPPCRGFTPALVETYKKIKTAGKAFEIVFVSSDKDQGAFDEYFGEMPWLAVPFSDR 92          
BLAST of mRNA_H-elongata_contig68504.14486.1 vs. uniprot
Match: A0A7S0SKT6_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SKT6_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 9.940e-26
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    7 LLGDMLRDSGGTDVPTSSSLEGKVVGLYFSASWCGPCRGFTPQLIKTYDAVRSAGKEFEVVLIGSDKKRDDFVRYHQKMPWLAVPFEDRLGQRSRWNCFFV 309
            + GD LR   G +V T  +L GKVVG+YFSA WC PCR FTP+L + Y+ +++ GK FE+V   SDK  ++F  YH + PWLA+P+ +R  +      F V
Sbjct:   15 MFGDTLRGKDGVEVNTIDALAGKVVGVYFSAHWCPPCRKFTPKLAQIYEDLKAQGKNFEIVFASSDKTVEEFTEYHGEQPWLAIPYTNRESKNKLSKKFEV 115          
BLAST of mRNA_H-elongata_contig68504.14486.1 vs. uniprot
Match: C1KG41_LEIDO (Mitochondrial tryparedoxin n=2 Tax=Leishmania TaxID=38568 RepID=C1KG41_LEIDO)

HSP 1 Score: 101 bits (251), Expect = 3.090e-25
Identity = 51/90 (56.67%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   40 TDVPTSSSLEGKVVGLYFSASWCGPCRGFTPQLIKTYDAVRSAGKEFEVVLIGSDKKRDDFVRYHQKMPWLAVPFEDRLGQRSRWNCFFV 309
            TDV  SS L GK +  YFSASWC PCRGFTPQL++ Y    +  K FEV+LI  D++ DDF  Y+ KMPWLA+PFEDR G     N F V
Sbjct:   20 TDVALSS-LAGKTLFFYFSASWCPPCRGFTPQLVEFYKT-HAKSKNFEVMLISWDEEVDDFTEYYGKMPWLALPFEDRKGMEFLKNGFKV 107          
BLAST of mRNA_H-elongata_contig68504.14486.1 vs. uniprot
Match: A0A640KLN9_LEITA (Tryparedoxin, putative n=1 Tax=Leishmania tarentolae TaxID=5689 RepID=A0A640KLN9_LEITA)

HSP 1 Score: 100 bits (250), Expect = 4.040e-25
Identity = 51/100 (51.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   10 LGDMLRDSGGTDVPTSSSLEGKVVGLYFSASWCGPCRGFTPQLIKTYDAVRSAGKEFEVVLIGSDKKRDDFVRYHQKMPWLAVPFEDRLGQRSRWNCFFV 309
            LGD+ +     D    SSL GK+V LYFSASWC PCRGFTP L++ Y   +++ K FEVVL+  D++ DDF  Y+QKMPWL +PFE R    S    F V
Sbjct:    8 LGDVSKLQKQNDTVDLSSLSGKIVFLYFSASWCPPCRGFTPLLMEFYQKYQTS-KNFEVVLVSWDEEEDDFNGYYQKMPWLTIPFEKRSILESLTKTFKV 106          
BLAST of mRNA_H-elongata_contig68504.14486.1 vs. uniprot
Match: A0A067C8F6_SAPPC (Thioredoxin domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C8F6_SAPPC)

HSP 1 Score: 100 bits (250), Expect = 6.530e-25
Identity = 50/102 (49.02%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    7 LLGDMLRDSGGTDVPTSSSLEG-KVVGLYFSASWCGPCRGFTPQLIKTYDAVRSAGKEFEVVLIGSDKKRDDFVRYHQKMPWLAVPFEDRLGQRSRWNCFFV 309
            L+G  LR SGG +V T+  L    VVGLYFSA WCGPCR FTP L   YD +  A  +F+VV + SDK  DDF  YH +MP+ A+P+ DR  Q +    F +
Sbjct:   11 LVGPRLRLSGGKEVATADHLASTSVVGLYFSAHWCGPCREFTPTLSTLYDDILDAHPDFDVVFVSSDKSEDDFCLYHDEMPFPALPWADRTRQAALREHFHI 112          
BLAST of mRNA_H-elongata_contig68504.14486.1 vs. uniprot
Match: A0A7S0MU66_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MU66_9CHLO)

HSP 1 Score: 105 bits (262), Expect = 9.940e-25
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    7 LLGDMLRDSGGTDVPTSSSLE-GKVVGLYFSASWCGPCRGFTPQLIKTYDAVRSAGKEFEVVLIGSDKKRDDFVRYHQKMPWLAVPFEDR 273
            +LG  L  SGG  V   S  E G  + LYFSA WCGPCRGFTP+L+KTY+A+++AGK FE+V + SD+    F  Y   MPWLA+PF+ R
Sbjct:  144 VLGSELVSSGGNKVSVMSLKEAGTYIALYFSAHWCGPCRGFTPELVKTYNALKAAGKPFEIVFVSSDRDEASFAEYFGTMPWLALPFDKR 233          
BLAST of mRNA_H-elongata_contig68504.14486.1 vs. uniprot
Match: A0A6I9S557_ELAGV (probable nucleoredoxin 1-1 n=3 Tax=Cocoseae TaxID=169705 RepID=A0A6I9S557_ELAGV)

HSP 1 Score: 106 bits (264), Expect = 1.410e-24
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   16 DMLRDSGGTDVPTSSSLEGKVVGLYFSASWCGPCRGFTPQLIKTYDAVRSAGKEFEVVLIGSDKKRDDFVRYHQKMPWLAVPFED 270
            D L  + G  V  ++ LEGK VGLYFSASWC PCRGFTP+LI+TY  + S GK+FEVV +  D+  D F  Y  KMPWLA+PF D
Sbjct:   59 DFLIHNNGDQVKIAN-LEGKTVGLYFSASWCPPCRGFTPKLIETYGELSSEGKDFEVVFVSGDRDEDSFNGYFSKMPWLAIPFSD 142          
BLAST of mRNA_H-elongata_contig68504.14486.1 vs. uniprot
Match: A0A8K0N1S5_COCNU (Putative nucleoredoxin 1-1 n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0N1S5_COCNU)

HSP 1 Score: 105 bits (263), Expect = 1.510e-24
Identity = 50/97 (51.55%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   19 MLRDSGGTDVPTSSSLEGKVVGLYFSASWCGPCRGFTPQLIKTYDAVRSAGKEFEVVLIGSDKKRDDFVRYHQKMPWLAVPFEDRLGQRSRWNCFFV 309
            ++R+SG  D    ++LEGK +GLYFSASWC PCR FTPQLI+TY  + S GK+FEVV +  D+  D F  Y  KMPWLA+PF D   +      F V
Sbjct:   32 LVRNSG--DQVKIANLEGKYIGLYFSASWCPPCRRFTPQLIETYGELSSVGKDFEVVFVSRDRDEDSFNGYFSKMPWLAIPFSDSKARDRLHKLFNV 126          
BLAST of mRNA_H-elongata_contig68504.14486.1 vs. uniprot
Match: E9ADX3_LEIMA (Tryparedoxin n=8 Tax=Leishmania TaxID=38568 RepID=E9ADX3_LEIMA)

HSP 1 Score: 99.0 bits (245), Expect = 2.500e-24
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   61 SLEGKVVGLYFSASWCGPCRGFTPQLIKTYDAVRSAGKEFEVVLIGSDKKRDDFVRYHQKMPWLAVPFEDRLGQRSRWNCFFV 309
            +L GK    YFSASWC PCRGFTPQL++ Y    +  K FEV+LI  D++ DDF  Y++KMPWLA+PFEDR G     N F V
Sbjct:   26 TLAGKTFFFYFSASWCPPCRGFTPQLVEFYKK-HAKSKNFEVMLISWDEEADDFAEYYKKMPWLALPFEDRKGMEFLKNGFKV 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68504.14486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC01_ECTSI6.390e-4269.31Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A6T0B168_CHRCT3.570e-2655.06Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0SKT6_9CHLO9.940e-2645.54Hypothetical protein (Fragment) n=2 Tax=Mantoniell... [more]
C1KG41_LEIDO3.090e-2556.67Mitochondrial tryparedoxin n=2 Tax=Leishmania TaxI... [more]
A0A640KLN9_LEITA4.040e-2551.00Tryparedoxin, putative n=1 Tax=Leishmania tarentol... [more]
A0A067C8F6_SAPPC6.530e-2549.02Thioredoxin domain-containing protein n=2 Tax=Sapr... [more]
A0A7S0MU66_9CHLO9.940e-2553.33Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A6I9S557_ELAGV1.410e-2457.65probable nucleoredoxin 1-1 n=3 Tax=Cocoseae TaxID=... [more]
A0A8K0N1S5_COCNU1.510e-2451.55Putative nucleoredoxin 1-1 n=1 Tax=Cocos nucifera ... [more]
E9ADX3_LEIMA2.500e-2455.42Tryparedoxin n=8 Tax=Leishmania TaxID=38568 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68504contigH-elongata_contig68504:1973..2569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue1.4e-34
Seed eggNOG ortholog2880.D8LC01
KEGG koko:K17609
EggNOG free text desc.cellular oxidant detoxification
EggNOG OGsKOG2501@1,KOG2501@2759
EC1.8.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-20_003930.1
Exons2
Model size309
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931079.5734262-CDS-H-elongata_contig68504:1972..21771622931079.5734262-CDS-H-elongata_contig68504:1972..2177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68504 1973..2177 -
1691679689.5255606-CDS-H-elongata_contig68504:1972..21771691679689.5255606-CDS-H-elongata_contig68504:1972..2177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68504 1973..2177 -
1622931079.590848-CDS-H-elongata_contig68504:2465..25691622931079.590848-CDS-H-elongata_contig68504:2465..2569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68504 2466..2569 -
1691679689.5374131-CDS-H-elongata_contig68504:2465..25691691679689.5374131-CDS-H-elongata_contig68504:2465..2569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68504 2466..2569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68504.14486.1prot_H-elongata_contig68504.14486.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68504 1973..2569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68504.14486.1

>prot_H-elongata_contig68504.14486.1 ID=prot_H-elongata_contig68504.14486.1|Name=mRNA_H-elongata_contig68504.14486.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MSLLGDMLRDSGGTDVPTSSSLEGKVVGLYFSASWCGPCRGFTPQLIKTY
DAVRSAGKEFEVVLIGSDKKRDDFVRYHQKMPWLAVPFEDRLGQRSRWNC
FFV
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mRNA from alignment at H-elongata_contig68504:1973..2569-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68504.14486.1 ID=mRNA_H-elongata_contig68504.14486.1|Name=mRNA_H-elongata_contig68504.14486.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=597bp|location=Sequence derived from alignment at H-elongata_contig68504:1973..2569- (Himanthalia elongata Himel1 dioecious)
ATGAGTCTCCTTGGGGACATGTTGAGAGATAGTGGTGGGACCGATGTTCC GACATCATCCTCCCTCGAAGGAAAGGTGGTGGGGCTGTACTTTTCCGCCA GCTGGTGAGTAGCACGTAATACATGTGTTTAGTGCTGCAGGCAGGTCAGC ACACGATACAAACTATAAGCGTGACGGCTGCTAGAATTAGCTAGCCAGAG GATTCATCGTCGTTGATGACGCTGTCGATTGCGGCTGCTGCCCTGCTACT GCTGCTGCCCTGCTACTGCTGCCCTGCTACTGCTGCCTTGCTACTGCTGC CCTGCTACTGCCGCATCATTCTCCACTGTTAATTTAACGTCTAGTATTTC TCCGATACGCAGTTTCCCATGCCTCTTGATGAATGACTGCAGGTGTGGAC CCTGCCGGGGCTTTACGCCTCAGCTAATCAAGACCTACGACGCTGTTCGT TCCGCAGGAAAAGAGTTCGAAGTGGTGCTAATCGGATCGGACAAGAAGCG CGACGACTTCGTCCGCTATCATCAGAAGATGCCGTGGCTAGCCGTTCCTT TCGAAGACAGGTTAGGGCAGAGATCGAGGTGGAACTGCTTTTTTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig68504:1973..2569-

>mRNA_H-elongata_contig68504.14486.1 ID=mRNA_H-elongata_contig68504.14486.1|Name=mRNA_H-elongata_contig68504.14486.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig68504:1973..2569- (Himanthalia elongata Himel1 dioecious)
ATGAGTCTCCTTGGGGACATGTTGAGAGATAGTGGTGGGACCGATGTTCC
GACATCATCCTCCCTCGAAGGAAAGGTGGTGGGGCTGTACTTTTCCGCCA
GCTGATGAGTCTCCTTGGGGACATGTTGAGAGATAGTGGTGGGACCGATG
TTCCGACATCATCCTCCCTCGAAGGAAAGGTGGTGGGGCTGTACTTTTCC
GCCAGCTGGTGTGGACCCTGCCGGGGCTTTACGCCTCAGCTAATCAAGAC
CTACGACGCTGTTCGTTCCGCAGGAAAAGAGTTCGAAGTGGTGCTAATCG
GATCGGACAAGAAGCGCGACGACTTCGTCCGCTATCATCAGAAGATGCCG
TGGCTAGCCGTTCCTTTCGAAGACAGGTTAGGGCAGAGATCGAGGTGGAA
CTGCTTTTTTGTTGTGTGGACCCTGCCGGGGCTTTACGCCTCAGCTAATC
AAGACCTACGACGCTGTTCGTTCCGCAGGAAAAGAGTTCGAAGTGGTGCT
AATCGGATCGGACAAGAAGCGCGACGACTTCGTCCGCTATCATCAGAAGA
TGCCGTGGCTAGCCGTTCCTTTCGAAGACAGGTTAGGGCAGAGATCGAGG
TGGAACTGCTTTTTTGTT
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